Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:42:08 (28695): wrapper (7.7.26015): starting
00:42:08 (28695): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 00:42:08] Arguments: --nthreads 12
[2025-10-13 00:42:08] Threads: 12
[2025-10-13 00:42:08] Checking for CVMFS
[2025-10-13 00:42:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:42:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:42:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:42:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:42:08] 2.11.2.0 2981 223809 94752 151649 2 59 15564393 20275201 1 130560 1 110462727 99.984 13501048 12517 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 00:42:08] CVMFS is ok
[2025-10-13 00:42:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:42:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:42:08] Further information can be found at the LHC@home message board.
[2025-10-13 00:42:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:42:08] Checking for apptainer binary...
[2025-10-13 00:42:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:42:08] Running /usr/bin/apptainer --version
[2025-10-13 00:42:09] apptainer version 1.3.2-1.el7
[2025-10-13 00:42:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:42:10] c-205-30.aglt2.org
[2025-10-13 00:42:10] apptainer works
[2025-10-13 00:42:10] Set ATHENA_PROC_NUMBER=12
[2025-10-13 00:42:10] Set ATHENA_CORE_NUMBER=12
[2025-10-13 00:42:10] Starting ATLAS job with PandaID=6841068749
[2025-10-13 00:42:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:56:37]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:56:37]  status_code=0
[2025-10-13 01:56:37]  storage_token=
[2025-10-13 01:56:37]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6841068749/log.46676269._092985.job.log.tgz.1
[2025-10-13 01:56:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/89/61/log.46676269._092985.job.log.tgz.1
[2025-10-13 01:56:37]  workdir=None
[2025-10-13 01:56:37] ]
[2025-10-13 01:56:37] 2025-10-13 05:55:23,859 | INFO     | transferring file log.46676269._092985.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6841068749/log.46676269._092985.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 01:56:37] 2025-10-13 05:55:23,859 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6841068749/log.46676269._092985.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._092985.job
[2025-10-13 01:56:37] 2025-10-13 05:55:23,879 | INFO     | adding to output.list: log.46676269._092985.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/89/61/log.46676269._092985.job.log.tg
[2025-10-13 01:56:37] 2025-10-13 05:55:23,880 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 01:56:37] 2025-10-13 05:55:23,880 | INFO     | summary of transferred files:
[2025-10-13 01:56:37] 2025-10-13 05:55:23,881 | INFO     |  -- lfn=log.46676269._092985.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 01:56:37] 2025-10-13 05:55:23,881 | INFO     | stage-out finished correctly
[2025-10-13 01:56:37] 2025-10-13 05:55:24,037 | INFO     | time since job start (4379s) is within the limit (172800.0s)
[2025-10-13 01:56:37] 2025-10-13 05:55:24,526 | INFO     | monitor loop #326: job 0:6841068749 is in state 'finished'
[2025-10-13 01:56:37] 2025-10-13 05:55:24,526 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:56:37] 2025-10-13 05:55:26,039 | INFO     | time since job start (4381s) is within the limit (172800.0s)
[2025-10-13 01:56:37] 2025-10-13 05:55:26,039 | INFO     | 4383s have passed since pilot start - server update state is 'RUNNING'
[2025-10-13 01:56:37] 2025-10-13 05:55:26,769 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 01:56:37] 2025-10-13 05:55:27,030 | INFO     | monitor loop #327: job 0:6841068749 is in state 'finished'
[2025-10-13 01:56:37] 2025-10-13 05:55:27,030 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:56:37] 2025-10-13 05:55:27,679 | INFO     | job 6841068749 has state=finished
[2025-10-13 01:56:37] 2025-10-13 05:55:27,679 | INFO     | preparing for final server update for job 6841068749 in state='finished'
[2025-10-13 01:56:37] 2025-10-13 05:55:27,679 | INFO     | this job has now completed (state=finished)
[2025-10-13 01:56:37] 2025-10-13 05:55:27,680 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 01:56:37] 2025-10-13 05:55:27,680 | INFO     | log transfer has been attempted: DONE
[2025-10-13 01:56:37] 2025-10-13 05:55:27,680 | INFO     | job 6841068749 has finished - writing final server update
[2025-10-13 01:56:37] 2025-10-13 05:55:27,680 | INFO     | total number of processed events: 400 (read)
[2025-10-13 01:56:37] 2025-10-13 05:55:27,681 | INFO     | executing command: lscpu
[2025-10-13 01:56:37] 2025-10-13 05:55:27,706 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 01:56:37] 2025-10-13 05:55:28,045 | INFO     | time since job start (4383s) is within the limit (172800.0s)
[2025-10-13 01:56:37] 2025-10-13 05:55:29,533 | INFO     | monitor loop #328: job 0:6841068749 is in state 'finished'
[2025-10-13 01:56:37] 2025-10-13 05:55:29,533 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:56:37] 2025-10-13 05:55:30,051 | INFO     | time since job start (4385s) is within the limit (172800.0s)
[2025-10-13 01:56:37] 2025-10-13 05:55:32,036 | INFO     | monitor loop #329: job 0:6841068749 is in state 'finished'
[2025-10-13 01:56:37] 2025-10-13 05:55:32,036 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:56:37] 2025-10-13 05:55:32,056 | INFO     | time since job start (4387s) is within the limit (172800.0s)
[2025-10-13 01:56:37] 2025-10-13 05:55:32,334 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 01:56:37] 2025-10-13 05:55:32,338 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-13 01:56:37] 2025-10-13 05:55:32,340 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841068749/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:56:37] 2025-10-13 05:55:32,341 | INFO     | extracted standard info from prmon json
[2025-10-13 01:56:37] 2025-10-13 05:55:32,341 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 01:56:37] 2025-10-13 05:55:32,341 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 01:56:37] 2025-10-13 05:55:32,341 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 01:56:37] 2025-10-13 05:55:32,342 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 01:56:37] 2025-10-13 05:55:32,343 | INFO     | fitting pss+swap vs Time
[2025-10-13 01:56:37] 2025-10-13 05:55:32,343 | INFO     | sum of square deviations: 85136480.0
[2025-10-13 01:56:37] 2025-10-13 05:55:32,344 | INFO     | sum of deviations: -8057173531.999998
[2025-10-13 01:56:37] 2025-10-13 05:55:32,344 | INFO     | mean x: 1760332831.0
[2025-10-13 01:56:37] 2025-10-13 05:55:32,344 | INFO     | mean y: 2798150.4153846153
[2025-10-13 01:56:37] 2025-10-13 05:55:32,344 | INFO     | -- intersect: 166597741862.486
[2025-10-13 01:56:37] 2025-10-13 05:55:32,344 | INFO     | intersect: 166597741862.486
[2025-10-13 01:56:37] 2025-10-13 05:55:32,344 | INFO     | chi2: 0.05176069168840026
[2025-10-13 01:56:37] 2025-10-13 05:55:32,345 | INFO     | -- intersect: 166597741862.486
[2025-10-13 01:56:37] 2025-10-13 05:55:32,345 | INFO     | current memory leak: -94.64 B/s (using 65 data points, chi2=0.05)
[2025-10-13 01:56:37] 2025-10-13 05:55:32,345 | INFO     | could have reported an average CPU frequency of 2047 MHz (6 samples)
[2025-10-13 01:56:37] 2025-10-13 05:55:32,345 | INFO     | ..............................
[2025-10-13 01:56:37] 2025-10-13 05:55:32,345 | INFO     | . Timing measurements:
[2025-10-13 01:56:37] 2025-10-13 05:55:32,345 | INFO     | . get job = 0 s
[2025-10-13 01:56:37] 2025-10-13 05:55:32,346 | INFO     | . initial setup = 2 s
[2025-10-13 01:56:37] 2025-10-13 05:55:32,346 | INFO     | . payload setup = 7 s
[2025-10-13 01:56:37] 2025-10-13 05:55:32,346 | INFO     | . stage-in = 0 s
[2025-10-13 01:56:37] 2025-10-13 05:55:32,346 | INFO     | . payload execution = 4350 s
[2025-10-13 01:56:37] 2025-10-13 05:55:32,346 | INFO     | . stage-out = 0 s
[2025-10-13 01:56:37] 2025-10-13 05:55:32,346 | INFO     | . log creation = 0 s
[2025-10-13 01:56:37] 2025-10-13 05:55:32,346 | INFO     | ..............................
[2025-10-13 01:56:37] 2025-10-13 05:55:32,869 | INFO     | 
[2025-10-13 01:56:37] 2025-10-13 05:55:32,870 | INFO     | job summary report
[2025-10-13 01:56:37] 2025-10-13 05:55:32,870 | INFO     | --------------------------------------------------
[2025-10-13 01:56:37] 2025-10-13 05:55:32,870 | INFO     | PanDA job id: 6841068749
[2025-10-13 01:56:37] 2025-10-13 05:55:32,870 | INFO     | task id: 46676269
[2025-10-13 01:56:37] 2025-10-13 05:55:32,870 | INFO     | errors: (none)
[2025-10-13 01:56:37] 2025-10-13 05:55:32,870 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 01:56:37] 2025-10-13 05:55:32,871 | INFO     | pilot state: finished 
[2025-10-13 01:56:37] 2025-10-13 05:55:32,871 | INFO     | transexitcode: 0
[2025-10-13 01:56:37] 2025-10-13 05:55:32,871 | INFO     | exeerrorcode: 0
[2025-10-13 01:56:37] 2025-10-13 05:55:32,871 | INFO     | exeerrordiag: 
[2025-10-13 01:56:37] 2025-10-13 05:55:32,871 | INFO     | exitcode: 0
[2025-10-13 01:56:37] 2025-10-13 05:55:32,871 | INFO     | exitmsg: OK
[2025-10-13 01:56:37] 2025-10-13 05:55:32,872 | INFO     | cpuconsumptiontime: 47350 s
[2025-10-13 01:56:37] 2025-10-13 05:55:32,872 | INFO     | nevents: 400
[2025-10-13 01:56:37] 2025-10-13 05:55:32,872 | INFO     | neventsw: 0
[2025-10-13 01:56:37] 2025-10-13 05:55:32,872 | INFO     | pid: 6467
[2025-10-13 01:56:37] 2025-10-13 05:55:32,872 | INFO     | pgrp: 6467
[2025-10-13 01:56:37] 2025-10-13 05:55:32,872 | INFO     | corecount: 12
[2025-10-13 01:56:37] 2025-10-13 05:55:32,873 | INFO     | event service: False
[2025-10-13 01:56:37] 2025-10-13 05:55:32,873 | INFO     | sizes: {0: 2348029, 1: 2348885, 6: 2349147, 12: 2349175, 4361: 2375223, 4363: 2384221, 4366: 2384405, 4372: 2384599}
[2025-10-13 01:56:37] 2025-10-13 05:55:32,873 | INFO     | --------------------------------------------------
[2025-10-13 01:56:37] 2025-10-13 05:55:32,873 | INFO     | 
[2025-10-13 01:56:37] 2025-10-13 05:55:32,873 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 01:56:37] 2025-10-13 05:55:32,898 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:56:37] 2025-10-13 05:55:32,898 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:56:37] 2025-10-13 05:55:32,899 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:56:37] 2025-10-13 05:55:32,899 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:56:37] 2025-10-13 05:55:32,899 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:56:37] 2025-10-13 05:55:32,899 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:56:37] 2025-10-13 05:55:32,899 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:56:37] 2025-10-13 05:55:32,899 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:56:37] 2025-10-13 05:55:32,900 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:56:37] 2025-10-13 05:55:32,900 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:56:37] 2025-10-13 05:55:32,900 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:56:37] 2025-10-13 05:55:32,900 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:56:37] 2025-10-13 05:55:32,900 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:56:37] 2025-10-13 05:55:32,900 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:56:37] 2025-10-13 05:55:32,900 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:56:37] 2025-10-13 05:55:32,901 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:56:37] 2025-10-13 05:55:32,901 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:56:37] 2025-10-13 05:55:32,901 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:56:37] 2025-10-13 05:55:32,901 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:56:37] 2025-10-13 05:55:32,901 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:56:37] 2025-10-13 05:55:32,901 | INFO     | job 6841068749 has completed (purged errors)
[2025-10-13 01:56:37] 2025-10-13 05:55:32,902 | INFO     | overall cleanup function is called
[2025-10-13 01:56:37] 2025-10-13 05:55:33,909 | INFO     | --- collectZombieJob: --- 10, [6467]
[2025-10-13 01:56:37] 2025-10-13 05:55:33,909 | INFO     | zombie collector waiting for pid 6467
[2025-10-13 01:56:37] 2025-10-13 05:55:33,909 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:56:37] 2025-10-13 05:55:33,910 | INFO     | collected zombie processes
[2025-10-13 01:56:37] 2025-10-13 05:55:33,910 | INFO     | will attempt to kill all subprocesses of pid=6467
[2025-10-13 01:56:37] 2025-10-13 05:55:34,002 | INFO     | process IDs to be killed: [6467] (in reverse order)
[2025-10-13 01:56:37] 2025-10-13 05:55:34,053 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:56:37] 2025-10-13 05:55:34,054 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:56:37] 2025-10-13 05:55:34,058 | INFO     | did not find any defunct processes belonging to 6467
[2025-10-13 01:56:37] 2025-10-13 05:55:34,061 | INFO     | did not find any defunct processes belonging to 6467
[2025-10-13 01:56:37] 2025-10-13 05:55:34,061 | INFO     | ready for new job
[2025-10-13 01:56:37] 2025-10-13 05:55:34,061 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:56:37] 2025-10-13 05:55:34,062 | INFO     | ***************************************
[2025-10-13 01:56:37] 2025-10-13 05:55:34,062 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:56:37] 2025-10-13 05:55:34,062 | INFO     | ***************************************
[2025-10-13 01:56:37] 2025-10-13 05:55:34,062 | INFO     | 
[2025-10-13 01:56:37] 2025-10-13 05:55:34,063 | INFO     | architecture information:
[2025-10-13 01:56:37] 2025-10-13 05:55:34,063 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:56:37] 2025-10-13 05:55:34,077 | INFO     | cat /etc/os-release:
[2025-10-13 01:56:37] NAME="CentOS Linux"
[2025-10-13 01:56:37] VERSION="7 (Core)"
[2025-10-13 01:56:37] ID="centos"
[2025-10-13 01:56:37] ID_LIKE="rhel fedora"
[2025-10-13 01:56:37] VERSION_ID="7"
[2025-10-13 01:56:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:56:37] ANSI_COLOR="0;31"
[2025-10-13 01:56:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:56:37] HOME_URL="https://www.centos.org/"
[2025-10-13 01:56:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:56:37] 
[2025-10-13 01:56:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:56:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:56:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:56:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:56:37] 
[2025-10-13 01:56:37] 2025-10-13 05:55:34,078 | INFO     | ***************************************
[2025-10-13 01:56:37] 2025-10-13 05:55:34,581 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 01:56:37] 2025-10-13 05:55:34,597 | INFO     | sufficient remaining disk space (29363273728 B)
[2025-10-13 01:56:37] 2025-10-13 05:55:34,597 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:56:37] 2025-10-13 05:55:34,597 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:56:37] 2025-10-13 05:55:34,597 | INFO     | update_server=False
[2025-10-13 01:56:37] 2025-10-13 05:55:34,597 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:56:37] 2025-10-13 05:55:34,598 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:56:37] 2025-10-13 05:55:34,979 | INFO     | all data control threads have been joined
[2025-10-13 01:56:37] 2025-10-13 05:55:35,218 | INFO     | all job control threads have been joined
[2025-10-13 01:56:37] 2025-10-13 05:55:35,544 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:56:37] 2025-10-13 05:55:35,545 | INFO     | aborting loop
[2025-10-13 01:56:37] 2025-10-13 05:55:35,563 | INFO     | all payload control threads have been joined
[2025-10-13 01:56:37] 2025-10-13 05:55:35,603 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:56:37] 2025-10-13 05:55:35,622 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:56:37] 2025-10-13 05:55:35,711 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:56:37] 2025-10-13 05:55:35,719 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:56:37] 2025-10-13 05:55:35,902 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:56:37] 2025-10-13 05:55:35,985 | INFO     | [data] control thread has finished
[2025-10-13 01:56:37] 2025-10-13 05:55:36,031 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:56:37] 2025-10-13 05:55:36,224 | INFO     | [job] control thread has finished
[2025-10-13 01:56:37] 2025-10-13 05:55:36,234 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:56:37] 2025-10-13 05:55:36,267 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:56:37] 2025-10-13 05:55:36,550 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:56:37] 2025-10-13 05:55:36,569 | INFO     | [payload] control thread has finished
[2025-10-13 01:56:37] 2025-10-13 05:55:36,603 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:56:37] 2025-10-13 05:55:36,955 | INFO     | [job] validate thread has finished
[2025-10-13 01:56:37] 2025-10-13 05:55:37,365 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:56:37] 2025-10-13 05:55:37,439 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:56:37] 2025-10-13 05:55:38,445 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:56:37] 2025-10-13 05:55:41,371 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:56:37] 2025-10-13 05:56:05,255 | INFO     | PID=32373 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 01:56:37] 2025-10-13 05:56:05,255 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:56:37] 2025-10-13 05:56:05,255 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:56:37] 2025-10-13 05:56:05,255 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:56:37] 2025-10-13 05:56:31,813 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:56:37] 2025-10-13 05:56:32,182 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140427664140096)>', '<ExcThread(monitor, started 140427227289344)>']
[2025-10-13 01:56:37] 2025-10-13 05:56:32,385 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:56:37] 2025-10-13 05:56:32,385 | INFO     | [monitor] control thread has ended
[2025-10-13 01:56:37] 2025-10-13 05:56:37,208 | INFO     | all workflow threads have been joined
[2025-10-13 01:56:37] 2025-10-13 05:56:37,218 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:56:37] 2025-10-13 05:56:37,218 | INFO     | traces error code: 0
[2025-10-13 01:56:37] 2025-10-13 05:56:37,218 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:56:37] 2025-10-13 05:56:37,302 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:56:37] 2025-10-13 05:56:37,306 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:56:37] 2025-10-13 05:56:37,310 [wrapper] pilotpid: 32373
[2025-10-13 01:56:37] 2025-10-13 05:56:37,313 [wrapper] Pilot exit status: 0
[2025-10-13 01:56:37] 2025-10-13 05:56:37,329 [wrapper] pandaids: 6841068749
[2025-10-13 01:56:37] 2025-10-13 05:56:37,376 [wrapper] cleanup supervisor_pilot 17034 32374
[2025-10-13 01:56:37] 2025-10-13 05:56:37,380 [wrapper] Test setup, not cleaning
[2025-10-13 01:56:37] 2025-10-13 05:56:37,384 [wrapper] apfmon messages muted
[2025-10-13 01:56:37] 2025-10-13 05:56:37,388 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:56:37] 2025-10-13 05:56:37,392 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:56:37]  *** Error codes and diagnostics ***
[2025-10-13 01:56:37]     "exeErrorCode": 0,
[2025-10-13 01:56:37]     "exeErrorDiag": "",
[2025-10-13 01:56:37]     "pilotErrorCode": 0,
[2025-10-13 01:56:37]     "pilotErrorDiag": "",
[2025-10-13 01:56:37]  *** Listing of results directory ***
[2025-10-13 01:56:37] total 412576
[2025-10-13 01:56:37] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 20:11 pilot3.tar.gz
[2025-10-13 01:56:37] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 20:15 queuedata.json
[2025-10-13 01:56:37] -rwx------ 1 boincer umatlas     36292 Oct 12 20:16 runpilot2-wrapper.sh
[2025-10-13 01:56:37] -rw-r--r-- 1 boincer umatlas       100 Oct 13 00:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:56:37] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 00:42 run_atlas
[2025-10-13 01:56:37] -rw-r--r-- 1 boincer umatlas       105 Oct 13 00:42 job.xml
[2025-10-13 01:56:37] -rw-r--r-- 2 boincer umatlas 221840282 Oct 13 00:42 EVNT.46676267._004686.pool.root.1
[2025-10-13 01:56:37] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 00:42 start_atlas.sh
[2025-10-13 01:56:37] drwxrwx--x 2 boincer umatlas      4096 Oct 13 00:42 shared
[2025-10-13 01:56:37] -rw-r--r-- 2 boincer umatlas    569680 Oct 13 00:42 input.tar.gz
[2025-10-13 01:56:37] -rw-r--r-- 1 boincer umatlas         0 Oct 13 00:42 boinc_lockfile
[2025-10-13 01:56:37] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 00:42 pandaJob.out
[2025-10-13 01:56:37] -rw------- 1 boincer umatlas    974365 Oct 13 00:42 agis_schedconf.cvmfs.json
[2025-10-13 01:56:37] -rw------- 1 boincer umatlas   1560580 Oct 13 00:42 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:56:37] drwx------ 5 boincer umatlas      4096 Oct 13 00:42 pilot3
[2025-10-13 01:56:37] -rw-r--r-- 1 boincer umatlas      5953 Oct 13 01:54 init_data.xml
[2025-10-13 01:56:37] -rw------- 1 boincer umatlas 194706467 Oct 13 01:54 HITS.46676269._092985.pool.root.1
[2025-10-13 01:56:37] -rw-r--r-- 1 boincer umatlas       529 Oct 13 01:55 boinc_task_state.xml
[2025-10-13 01:56:37] -rw------- 1 boincer umatlas      1050 Oct 13 01:55 memory_monitor_summary.json
[2025-10-13 01:56:37] -rw------- 1 boincer umatlas        95 Oct 13 01:55 pilot_heartbeat.json
[2025-10-13 01:56:37] -rw------- 1 boincer umatlas    378419 Oct 13 01:55 log.46676269._092985.job.log.tgz.1
[2025-10-13 01:56:37] -rw------- 1 boincer umatlas      7858 Oct 13 01:55 heartbeat.json
[2025-10-13 01:56:37] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 01:56 boinc_mmap_file
[2025-10-13 01:56:37] -rw-r--r-- 1 boincer umatlas        27 Oct 13 01:56 wrapper_checkpoint.txt
[2025-10-13 01:56:37] -rw------- 1 boincer umatlas      4746 Oct 13 01:56 pilotlog.txt
[2025-10-13 01:56:37] -rw------- 1 boincer umatlas    637686 Oct 13 01:56 log.46676269._092985.job.log.1
[2025-10-13 01:56:37] -rw------- 1 boincer umatlas       357 Oct 13 01:56 output.list
[2025-10-13 01:56:37] -rw-r--r-- 1 boincer umatlas       620 Oct 13 01:56 runtime_log
[2025-10-13 01:56:37] -rw------- 1 boincer umatlas   1034240 Oct 13 01:56 result.tar.gz
[2025-10-13 01:56:37] -rw-r--r-- 1 boincer umatlas      8705 Oct 13 01:56 runtime_log.err
[2025-10-13 01:56:37] -rw------- 1 boincer umatlas       659 Oct 13 01:56 C2zLDmtPLS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDBmNDmEsqv1m.diag
[2025-10-13 01:56:37] -rw-r--r-- 1 boincer umatlas     22108 Oct 13 01:56 stderr.txt
[2025-10-13 01:56:37] HITS file was successfully produced:
[2025-10-13 01:56:37] -rw------- 1 boincer umatlas 194706467 Oct 13 01:54 shared/HITS.pool.root.1
[2025-10-13 01:56:37]  *** Contents of shared directory: ***
[2025-10-13 01:56:37] total 408380
[2025-10-13 01:56:37] -rw-r--r-- 2 boincer umatlas 221840282 Oct 13 00:42 ATLAS.root_0
[2025-10-13 01:56:37] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 00:42 start_atlas.sh
[2025-10-13 01:56:37] -rw-r--r-- 2 boincer umatlas    569680 Oct 13 00:42 input.tar.gz
[2025-10-13 01:56:37] -rw------- 1 boincer umatlas 194706467 Oct 13 01:54 HITS.pool.root.1
[2025-10-13 01:56:37] -rw------- 1 boincer umatlas   1034240 Oct 13 01:56 result.tar.gz
01:56:38 (28695): run_atlas exited; CPU time 47322.881647
01:56:38 (28695): called boinc_finish(0)

</stderr_txt>
]]>

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