Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:56:36 (1395930): wrapper (7.7.26015): starting
14:56:36 (1395930): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 14:56:36] Arguments: --nthreads 3
[2025-10-13 14:56:36] Threads: 3
[2025-10-13 14:56:36] Checking for CVMFS
[2025-10-13 14:56:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 14:56:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 14:56:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 14:56:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 14:56:37] 2.9.2.0 3005 4525 86052 151661 1 57 29558929 36864000 0 130560 0 3675346 99.991 161578 880 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 14:56:37] CVMFS is ok
[2025-10-13 14:56:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 14:56:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 14:56:37] Further information can be found at the LHC@home message board.
[2025-10-13 14:56:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 14:56:37] Checking for apptainer binary...
[2025-10-13 14:56:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 14:56:37] Running /usr/bin/apptainer --version
[2025-10-13 14:56:37] apptainer version 1.4.1-1.1
[2025-10-13 14:56:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 14:56:37] thA335b
[2025-10-13 14:56:37] apptainer works
[2025-10-13 14:56:37] Set ATHENA_PROC_NUMBER=3
[2025-10-13 14:56:37] Set ATHENA_CORE_NUMBER=3
[2025-10-13 14:56:37] Starting ATLAS job with PandaID=6840970133
[2025-10-13 14:56:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 16:19:53]  *** The last 200 lines of the pilot log: ***
[2025-10-13 16:19:53] 2025-10-13 14:19:00,299 | INFO     | [job] queue monitor thread has finished
[2025-10-13 16:19:53] 2025-10-13 14:19:00,299 | INFO     | [job] retrieve thread has finished
[2025-10-13 16:19:53] 2025-10-13 14:19:00,299 | INFO     | [job] job monitor thread has finished
[2025-10-13 16:19:53] 2025-10-13 14:19:00,437 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 16:19:53] 2025-10-13 14:19:00,652 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 16:19:53] 2025-10-13 14:19:00,665 | INFO     | [job] validate thread has finished
[2025-10-13 16:19:53] 2025-10-13 14:19:00,670 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 16:19:53] 2025-10-13 14:19:00,749 | INFO     | [data] control thread has finished
[2025-10-13 16:19:53] 2025-10-13 14:19:00,853 | INFO     | all job control threads have been joined
[2025-10-13 16:19:53] 2025-10-13 14:19:01,069 | INFO     | [payload] validate_post thread has finished
[2025-10-13 16:19:53] 2025-10-13 14:19:01,162 | INFO     | [data] copytool_in thread has finished
[2025-10-13 16:19:53] 2025-10-13 14:19:01,235 | INFO     | [payload] control thread has finished
[2025-10-13 16:19:53] 2025-10-13 14:19:01,300 | INFO     | [data] copytool_out thread has finished
[2025-10-13 16:19:53] 2025-10-13 14:19:01,748 | INFO     | [payload] failed_post thread has finished
[2025-10-13 16:19:53] 2025-10-13 14:19:01,858 | INFO     | [job] control thread has finished
[2025-10-13 16:19:53] 2025-10-13 14:19:01,889 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 16:19:53] 2025-10-13 14:19:05,893 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 16:19:53] 2025-10-13 14:19:10,070 | INFO     | job.realtimelogging is not enabled
[2025-10-13 16:19:53] 2025-10-13 14:19:11,075 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 16:19:53] 2025-10-13 14:19:29,765 | INFO     | PID=1399655 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 16:19:53] 2025-10-13 14:19:29,766 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 16:19:53] 2025-10-13 14:19:29,766 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 16:19:53] 2025-10-13 14:19:29,766 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 16:19:53] 2025-10-13 14:19:47,789 | INFO     | [monitor] cgroup control has ended
[2025-10-13 16:19:53] 2025-10-13 14:19:48,393 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140407167465280)>', '<ExcThread(monitor, started 140406675191552)>']
[2025-10-13 16:19:53] 2025-10-13 14:19:48,868 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 16:19:53] 2025-10-13 14:19:48,868 | INFO     | [monitor] control thread has ended
[2025-10-13 16:19:53] 2025-10-13 14:19:53,419 | INFO     | all workflow threads have been joined
[2025-10-13 16:19:53] 2025-10-13 14:19:53,419 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 16:19:53] 2025-10-13 14:19:53,419 | INFO     | traces error code: 0
[2025-10-13 16:19:53] 2025-10-13 14:19:53,419 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 16:19:53] 2025-10-13 14:19:53,470 [wrapper] ==== pilot stdout END ====
[2025-10-13 16:19:53] 2025-10-13 14:19:53,472 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 16:19:53] 2025-10-13 14:19:53,474 [wrapper] pilotpid: 1399655
[2025-10-13 16:19:53] 2025-10-13 14:19:53,477 [wrapper] Pilot exit status: 0
[2025-10-13 16:19:53] 2025-10-13 14:19:53,484 [wrapper] pandaids: 6840970133
[2025-10-13 16:19:53] 2025-10-13 14:19:53,500 [wrapper] cleanup supervisor_pilot 1418155 1399656
[2025-10-13 16:19:53] 2025-10-13 14:19:53,502 [wrapper] Test setup, not cleaning
[2025-10-13 16:19:53] 2025-10-13 14:19:53,504 [wrapper] apfmon messages muted
[2025-10-13 16:19:53] 2025-10-13 14:19:53,506 [wrapper] ==== wrapper stdout END ====
[2025-10-13 16:19:53] 2025-10-13 14:19:53,509 [wrapper] ==== wrapper stderr END ====
[2025-10-13 16:19:53]  *** Error codes and diagnostics ***
[2025-10-13 16:19:53]     "exeErrorCode": 0,
[2025-10-13 16:19:53]     "exeErrorDiag": "",
[2025-10-13 16:19:53]     "pilotErrorCode": 0,
[2025-10-13 16:19:53]     "pilotErrorDiag": "",
[2025-10-13 16:19:53]  *** Listing of results directory ***
[2025-10-13 16:19:53] total 416132
[2025-10-13 16:19:53] -rw-r--r-- 1 boinc boinc    557409 Oct 13 01:51 pilot3.tar.gz
[2025-10-13 16:19:53] -rwx------ 1 boinc boinc     36292 Oct 13 01:52 runpilot2-wrapper.sh
[2025-10-13 16:19:53] -rw-r--r-- 1 boinc boinc      5112 Oct 13 01:52 queuedata.json
[2025-10-13 16:19:53] -rw-r--r-- 1 boinc boinc       100 Oct 13 14:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 16:19:53] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 14:56 run_atlas
[2025-10-13 16:19:53] -rw-r--r-- 1 boinc boinc       105 Oct 13 14:56 job.xml
[2025-10-13 16:19:53] -rw-r--r-- 2 boinc boinc 219247171 Oct 13 14:56 EVNT.46676267._004671.pool.root.1
[2025-10-13 16:19:53] drwxrwx--x 2 boinc boinc      4096 Oct 13 14:56 shared
[2025-10-13 16:19:53] -rw-r--r-- 2 boinc boinc    569676 Oct 13 14:56 input.tar.gz
[2025-10-13 16:19:53] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:56 start_atlas.sh
[2025-10-13 16:19:53] -rw-r--r-- 1 boinc boinc         0 Oct 13 14:56 boinc_setup_complete
[2025-10-13 16:19:53] -rw-r--r-- 1 boinc boinc      6445 Oct 13 14:56 init_data.xml
[2025-10-13 16:19:53] -rw-r--r-- 1 boinc boinc         0 Oct 13 14:56 boinc_lockfile
[2025-10-13 16:19:53] -rw-r--r-- 1 boinc boinc      2550 Oct 13 14:56 pandaJob.out
[2025-10-13 16:19:53] -rw------- 1 boinc boinc    972497 Oct 13 14:56 agis_schedconf.cvmfs.json
[2025-10-13 16:19:53] -rw------- 1 boinc boinc   1560580 Oct 13 14:56 agis_ddmendpoints.agis.ALL.json
[2025-10-13 16:19:53] drwx------ 5 boinc boinc      4096 Oct 13 14:56 pilot3
[2025-10-13 16:19:53] -rw------- 1 boinc boinc 201032127 Oct 13 16:18 HITS.46676269._092553.pool.root.1
[2025-10-13 16:19:53] -rw-r--r-- 1 boinc boinc       529 Oct 13 16:18 boinc_task_state.xml
[2025-10-13 16:19:53] -rw------- 1 boinc boinc      1013 Oct 13 16:18 memory_monitor_summary.json
[2025-10-13 16:19:53] -rw------- 1 boinc boinc    249936 Oct 13 16:18 log.46676269._092553.job.log.tgz.1
[2025-10-13 16:19:53] -rw------- 1 boinc boinc      7748 Oct 13 16:18 heartbeat.json
[2025-10-13 16:19:53] -rw-r--r-- 1 boinc boinc        27 Oct 13 16:19 wrapper_checkpoint.txt
[2025-10-13 16:19:53] -rw-r--r-- 1 boinc boinc      8192 Oct 13 16:19 boinc_mmap_file
[2025-10-13 16:19:53] -rw------- 1 boinc boinc        95 Oct 13 16:19 pilot_heartbeat.json
[2025-10-13 16:19:53] -rw------- 1 boinc boinc      4824 Oct 13 16:19 pilotlog.txt
[2025-10-13 16:19:53] -rw------- 1 boinc boinc    724776 Oct 13 16:19 log.46676269._092553.job.log.1
[2025-10-13 16:19:53] -rw------- 1 boinc boinc       357 Oct 13 16:19 output.list
[2025-10-13 16:19:53] -rw-r--r-- 1 boinc boinc       620 Oct 13 16:19 runtime_log
[2025-10-13 16:19:53] -rw------- 1 boinc boinc    993280 Oct 13 16:19 result.tar.gz
[2025-10-13 16:19:53] -rw-r--r-- 1 boinc boinc      8782 Oct 13 16:19 runtime_log.err
[2025-10-13 16:19:53] -rw------- 1 boinc boinc       659 Oct 13 16:19 UVmKDmp2KS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm55lNDmBqkgPm.diag
[2025-10-13 16:19:53] -rw-r--r-- 1 boinc boinc      6623 Oct 13 16:19 stderr.txt
[2025-10-13 16:19:53] HITS file was successfully produced:
[2025-10-13 16:19:53] -rw------- 1 boinc boinc 201032127 Oct 13 16:18 shared/HITS.pool.root.1
[2025-10-13 16:19:53]  *** Contents of shared directory: ***
[2025-10-13 16:19:53] total 411992
[2025-10-13 16:19:53] -rw-r--r-- 2 boinc boinc 219247171 Oct 13 14:56 ATLAS.root_0
[2025-10-13 16:19:53] -rw-r--r-- 2 boinc boinc    569676 Oct 13 14:56 input.tar.gz
[2025-10-13 16:19:53] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:56 start_atlas.sh
[2025-10-13 16:19:53] -rw------- 1 boinc boinc 201032127 Oct 13 16:18 HITS.pool.root.1
[2025-10-13 16:19:53] -rw------- 1 boinc boinc    993280 Oct 13 16:19 result.tar.gz
16:20:15 (1395930): run_atlas exited; CPU time 14107.644744
16:20:15 (1395930): called boinc_finish(0)

</stderr_txt>
]]>

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