Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:02:54 (4079964): wrapper (7.7.26015): starting
01:02:54 (4079964): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 01:02:54] Arguments: --nthreads 9
[2025-10-13 01:02:54] Threads: 9
[2025-10-13 01:02:54] Checking for CVMFS
[2025-10-13 01:02:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:02:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:02:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:02:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:02:54] 2.13.2.0 3269412 36721 379192 151649 2 439 40394701 40960000 29190 16776704 0 474822562 99.850 185622603 36754 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 01:02:54] CVMFS is ok
[2025-10-13 01:02:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 01:02:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 01:02:54] Further information can be found at the LHC@home message board.
[2025-10-13 01:02:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:02:54] Checking for apptainer binary...
[2025-10-13 01:02:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:02:54] Running /usr/bin/apptainer --version
[2025-10-13 01:02:54] apptainer version 1.4.3-1.el9
[2025-10-13 01:02:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:02:54] c8-16-2.aglt2.org
[2025-10-13 01:02:54] apptainer works
[2025-10-13 01:02:55] Set ATHENA_PROC_NUMBER=9
[2025-10-13 01:02:55] Set ATHENA_CORE_NUMBER=9
[2025-10-13 01:02:55] Starting ATLAS job with PandaID=6841068765
[2025-10-13 01:02:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:55:17]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:55:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/31/log.46676269._093001.job.log.tgz.1
[2025-10-13 01:55:17]  workdir=None
[2025-10-13 01:55:17] ]
[2025-10-13 01:55:17] 2025-10-13 05:54:04,098 | INFO     | transferring file log.46676269._093001.job.log.tgz.1 from /tmp/boinchome/slots/6/PanDA_Pilot-6841068765/log.46676269._093001.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 01:55:17] 2025-10-13 05:54:04,098 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/6/PanDA_Pilot-6841068765/log.46676269._093001.job.log.tgz.1 /tmp/boinchome/slots/6/log.46676269._093001.job
[2025-10-13 01:55:17] 2025-10-13 05:54:04,116 | INFO     | adding to output.list: log.46676269._093001.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/31/log.46676269._093001.job.log.tg
[2025-10-13 01:55:17] 2025-10-13 05:54:04,117 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 01:55:17] 2025-10-13 05:54:04,117 | INFO     | summary of transferred files:
[2025-10-13 01:55:17] 2025-10-13 05:54:04,117 | INFO     |  -- lfn=log.46676269._093001.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 01:55:17] 2025-10-13 05:54:04,117 | INFO     | stage-out finished correctly
[2025-10-13 01:55:17] 2025-10-13 05:54:04,976 | INFO     | monitor loop #211: job 0:6841068765 is in state 'finished'
[2025-10-13 01:55:17] 2025-10-13 05:54:04,976 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:55:17] 2025-10-13 05:54:05,175 | INFO     | time since job start (3060s) is within the limit (172800.0s)
[2025-10-13 01:55:17] 2025-10-13 05:54:05,175 | INFO     | 3061s have passed since pilot start - server update state is 'RUNNING'
[2025-10-13 01:55:17] 2025-10-13 05:54:06,859 | INFO     | PID=4084506 has CPU usage=15.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 01:55:17] 2025-10-13 05:54:06,860 | INFO     | .. there are 42 such processes running
[2025-10-13 01:55:17] 2025-10-13 05:54:07,007 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 01:55:17] 2025-10-13 05:54:07,479 | INFO     | monitor loop #212: job 0:6841068765 is in state 'finished'
[2025-10-13 01:55:17] 2025-10-13 05:54:07,479 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:55:17] 2025-10-13 05:54:07,860 | INFO     | time since job start (3062s) is within the limit (172800.0s)
[2025-10-13 01:55:17] 2025-10-13 05:54:09,866 | INFO     | time since job start (3064s) is within the limit (172800.0s)
[2025-10-13 01:55:17] 2025-10-13 05:54:09,900 | INFO     | job 6841068765 has state=finished
[2025-10-13 01:55:17] 2025-10-13 05:54:09,900 | INFO     | preparing for final server update for job 6841068765 in state='finished'
[2025-10-13 01:55:17] 2025-10-13 05:54:09,900 | INFO     | this job has now completed (state=finished)
[2025-10-13 01:55:17] 2025-10-13 05:54:09,900 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 01:55:17] 2025-10-13 05:54:09,900 | INFO     | log transfer has been attempted: DONE
[2025-10-13 01:55:17] 2025-10-13 05:54:09,901 | INFO     | job 6841068765 has finished - writing final server update
[2025-10-13 01:55:17] 2025-10-13 05:54:09,901 | INFO     | total number of processed events: 400 (read)
[2025-10-13 01:55:17] 2025-10-13 05:54:09,901 | INFO     | executing command: lscpu
[2025-10-13 01:55:17] 2025-10-13 05:54:09,958 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 01:55:17] 2025-10-13 05:54:09,983 | INFO     | monitor loop #213: job 0:6841068765 is in state 'finished'
[2025-10-13 01:55:17] 2025-10-13 05:54:09,984 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:55:17] 2025-10-13 05:54:11,871 | INFO     | time since job start (3066s) is within the limit (172800.0s)
[2025-10-13 01:55:17] 2025-10-13 05:54:12,487 | INFO     | monitor loop #214: job 0:6841068765 is in state 'finished'
[2025-10-13 01:55:17] 2025-10-13 05:54:12,487 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:55:17] 2025-10-13 05:54:13,877 | INFO     | time since job start (3068s) is within the limit (172800.0s)
[2025-10-13 01:55:17] 2025-10-13 05:54:14,148 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 01:55:17] 2025-10-13 05:54:14,153 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3705.458859375001
[2025-10-13 01:55:17] 2025-10-13 05:54:14,167 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6841068765/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:55:17] 2025-10-13 05:54:14,168 | INFO     | extracted standard info from prmon json
[2025-10-13 01:55:17] 2025-10-13 05:54:14,168 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 01:55:17] 2025-10-13 05:54:14,168 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 01:55:17] 2025-10-13 05:54:14,168 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 01:55:17] 2025-10-13 05:54:14,168 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 01:55:17] 2025-10-13 05:54:14,169 | INFO     | fitting pss+swap vs Time
[2025-10-13 01:55:17] 2025-10-13 05:54:14,169 | INFO     | sum of square deviations: 24640462.0
[2025-10-13 01:55:17] 2025-10-13 05:54:14,169 | INFO     | sum of deviations: 160128843.0
[2025-10-13 01:55:17] 2025-10-13 05:54:14,169 | INFO     | mean x: 1760333398.0
[2025-10-13 01:55:17] 2025-10-13 05:54:14,169 | INFO     | mean y: 2233497.302325581
[2025-10-13 01:55:17] 2025-10-13 05:54:14,169 | INFO     | -- intersect: -11437493173.24462
[2025-10-13 01:55:17] 2025-10-13 05:54:14,170 | INFO     | intersect: -11437493173.24462
[2025-10-13 01:55:17] 2025-10-13 05:54:14,170 | INFO     | chi2: 0.009251947255922632
[2025-10-13 01:55:17] 2025-10-13 05:54:14,170 | INFO     | -- intersect: -11437493173.24462
[2025-10-13 01:55:17] 2025-10-13 05:54:14,170 | INFO     | current memory leak: 6.50 B/s (using 43 data points, chi2=0.01)
[2025-10-13 01:55:17] 2025-10-13 05:54:14,170 | INFO     | could have reported an average CPU frequency of 3757 MHz (5 samples)
[2025-10-13 01:55:17] 2025-10-13 05:54:14,170 | INFO     | ..............................
[2025-10-13 01:55:17] 2025-10-13 05:54:14,170 | INFO     | . Timing measurements:
[2025-10-13 01:55:17] 2025-10-13 05:54:14,170 | INFO     | . get job = 0 s
[2025-10-13 01:55:17] 2025-10-13 05:54:14,170 | INFO     | . initial setup = 2 s
[2025-10-13 01:55:17] 2025-10-13 05:54:14,170 | INFO     | . payload setup = 5 s
[2025-10-13 01:55:17] 2025-10-13 05:54:14,170 | INFO     | . stage-in = 0 s
[2025-10-13 01:55:17] 2025-10-13 05:54:14,170 | INFO     | . payload execution = 3031 s
[2025-10-13 01:55:17] 2025-10-13 05:54:14,170 | INFO     | . stage-out = 0 s
[2025-10-13 01:55:17] 2025-10-13 05:54:14,170 | INFO     | . log creation = 0 s
[2025-10-13 01:55:17] 2025-10-13 05:54:14,170 | INFO     | ..............................
[2025-10-13 01:55:17] 2025-10-13 05:54:14,494 | INFO     | 
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | job summary report
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | --------------------------------------------------
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | PanDA job id: 6841068765
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | task id: 46676269
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | errors: (none)
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | pilot state: finished 
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | transexitcode: 0
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | exeerrorcode: 0
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | exeerrordiag: 
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | exitcode: 0
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | exitmsg: OK
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | cpuconsumptiontime: 23038 s
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | nevents: 400
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | neventsw: 0
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | pid: 4091637
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | pgrp: 4091637
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | corecount: 9
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | event service: False
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | sizes: {0: 2348851, 5: 2349113, 11: 2349169, 3041: 2374748, 3043: 2383746, 3046: 2383802, 3053: 2384156}
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | --------------------------------------------------
[2025-10-13 01:55:17] 2025-10-13 05:54:14,495 | INFO     | 
[2025-10-13 01:55:17] 2025-10-13 05:54:14,496 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-10-13 01:55:17] 2025-10-13 05:54:14,515 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:55:17] 2025-10-13 05:54:14,515 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:55:17] 2025-10-13 05:54:14,515 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:55:17] 2025-10-13 05:54:14,515 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:55:17] 2025-10-13 05:54:14,515 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:55:17] 2025-10-13 05:54:14,515 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:55:17] 2025-10-13 05:54:14,515 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:55:17] 2025-10-13 05:54:14,515 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:55:17] 2025-10-13 05:54:14,515 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:55:17] 2025-10-13 05:54:14,515 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:55:17] 2025-10-13 05:54:14,515 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:55:17] 2025-10-13 05:54:14,515 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:55:17] 2025-10-13 05:54:14,515 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:55:17] 2025-10-13 05:54:14,515 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:55:17] 2025-10-13 05:54:14,515 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:55:17] 2025-10-13 05:54:14,516 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:55:17] 2025-10-13 05:54:14,516 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:55:17] 2025-10-13 05:54:14,516 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:55:17] 2025-10-13 05:54:14,516 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:55:17] 2025-10-13 05:54:14,516 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:55:17] 2025-10-13 05:54:14,516 | INFO     | job 6841068765 has completed (purged errors)
[2025-10-13 01:55:17] 2025-10-13 05:54:14,516 | INFO     | overall cleanup function is called
[2025-10-13 01:55:17] 2025-10-13 05:54:15,523 | INFO     | --- collectZombieJob: --- 10, [4091637]
[2025-10-13 01:55:17] 2025-10-13 05:54:15,523 | INFO     | zombie collector waiting for pid 4091637
[2025-10-13 01:55:17] 2025-10-13 05:54:15,523 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:55:17] 2025-10-13 05:54:15,523 | INFO     | collected zombie processes
[2025-10-13 01:55:17] 2025-10-13 05:54:15,523 | INFO     | will attempt to kill all subprocesses of pid=4091637
[2025-10-13 01:55:17] 2025-10-13 05:54:16,115 | INFO     | process IDs to be killed: [4091637] (in reverse order)
[2025-10-13 01:55:17] 2025-10-13 05:54:16,329 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:55:17] 2025-10-13 05:54:16,329 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:55:17] 2025-10-13 05:54:16,360 | INFO     | did not find any defunct processes belonging to 4091637
[2025-10-13 01:55:17] 2025-10-13 05:54:16,388 | INFO     | did not find any defunct processes belonging to 4091637
[2025-10-13 01:55:17] 2025-10-13 05:54:16,388 | INFO     | ready for new job
[2025-10-13 01:55:17] 2025-10-13 05:54:16,388 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:55:17] 2025-10-13 05:54:16,389 | INFO     | ***************************************
[2025-10-13 01:55:17] 2025-10-13 05:54:16,389 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:55:17] 2025-10-13 05:54:16,390 | INFO     | ***************************************
[2025-10-13 01:55:17] 2025-10-13 05:54:16,390 | INFO     | 
[2025-10-13 01:55:17] 2025-10-13 05:54:16,406 | INFO     | architecture information:
[2025-10-13 01:55:17] 2025-10-13 05:54:16,407 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:55:17] 2025-10-13 05:54:16,422 | INFO     | cat /etc/os-release:
[2025-10-13 01:55:17] NAME="CentOS Linux"
[2025-10-13 01:55:17] VERSION="7 (Core)"
[2025-10-13 01:55:17] ID="centos"
[2025-10-13 01:55:17] ID_LIKE="rhel fedora"
[2025-10-13 01:55:17] VERSION_ID="7"
[2025-10-13 01:55:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:55:17] ANSI_COLOR="0;31"
[2025-10-13 01:55:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:55:17] HOME_URL="https://www.centos.org/"
[2025-10-13 01:55:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:55:17] 
[2025-10-13 01:55:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:55:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:55:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:55:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:55:17] 
[2025-10-13 01:55:17] 2025-10-13 05:54:16,423 | INFO     | ***************************************
[2025-10-13 01:55:17] 2025-10-13 05:54:16,925 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-10-13 01:55:17] 2025-10-13 05:54:16,943 | INFO     | sufficient remaining disk space (166153158656 B)
[2025-10-13 01:55:17] 2025-10-13 05:54:16,944 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:55:17] 2025-10-13 05:54:16,944 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:55:17] 2025-10-13 05:54:16,944 | INFO     | update_server=False
[2025-10-13 01:55:17] 2025-10-13 05:54:16,944 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:55:17] 2025-10-13 05:54:16,944 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:55:17] 2025-10-13 05:54:16,944 | INFO     | aborting loop
[2025-10-13 01:55:17] 2025-10-13 05:54:17,190 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:55:17] 2025-10-13 05:54:17,568 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:55:17] 2025-10-13 05:54:17,821 | INFO     | all data control threads have been joined
[2025-10-13 01:55:17] 2025-10-13 05:54:17,947 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:55:17] 2025-10-13 05:54:17,949 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:55:17] 2025-10-13 05:54:18,236 | INFO     | all payload control threads have been joined
[2025-10-13 01:55:17] 2025-10-13 05:54:18,385 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:55:17] 2025-10-13 05:54:18,581 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:55:17] 2025-10-13 05:54:18,648 | INFO     | all job control threads have been joined
[2025-10-13 01:55:17] 2025-10-13 05:54:18,657 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:55:17] 2025-10-13 05:54:18,667 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:55:17] 2025-10-13 05:54:18,677 | INFO     | [job] validate thread has finished
[2025-10-13 01:55:17] 2025-10-13 05:54:18,826 | INFO     | [data] control thread has finished
[2025-10-13 01:55:17] 2025-10-13 05:54:19,024 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:55:17] 2025-10-13 05:54:19,148 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:55:17] 2025-10-13 05:54:19,197 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:55:17] 2025-10-13 05:54:19,241 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:55:17] 2025-10-13 05:54:19,241 | INFO     | [payload] control thread has finished
[2025-10-13 01:55:17] 2025-10-13 05:54:19,497 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:55:17] 2025-10-13 05:54:19,649 | INFO     | [job] control thread has finished
[2025-10-13 01:55:17] 2025-10-13 05:54:20,246 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:55:17] 2025-10-13 05:54:21,574 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:55:17] 2025-10-13 05:54:47,675 | INFO     | PID=4084506 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 01:55:17] 2025-10-13 05:54:47,675 | INFO     | .. there are 42 such processes running
[2025-10-13 01:55:17] 2025-10-13 05:54:47,676 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:55:17] 2025-10-13 05:54:47,676 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:55:17] 2025-10-13 05:54:47,676 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:55:17] 2025-10-13 05:55:10,654 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:55:17] 2025-10-13 05:55:12,041 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140680486471488)>', '<ExcThread(monitor, started 140679707621120)>']
[2025-10-13 01:55:17] 2025-10-13 05:55:12,799 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:55:17] 2025-10-13 05:55:12,799 | INFO     | [monitor] control thread has ended
[2025-10-13 01:55:17] 2025-10-13 05:55:17,067 | INFO     | all workflow threads have been joined
[2025-10-13 01:55:17] 2025-10-13 05:55:17,067 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:55:17] 2025-10-13 05:55:17,067 | INFO     | traces error code: 0
[2025-10-13 01:55:17] 2025-10-13 05:55:17,067 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:55:17] 2025-10-13 05:55:17,301 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:55:17] 2025-10-13 05:55:17,304 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:55:17] 2025-10-13 05:55:17,306 [wrapper] pilotpid: 4084506
[2025-10-13 01:55:17] 2025-10-13 05:55:17,309 [wrapper] Pilot exit status: 0
[2025-10-13 01:55:17] 2025-10-13 05:55:17,318 [wrapper] pandaids: 6841068765
[2025-10-13 01:55:17] 2025-10-13 05:55:17,452 [wrapper] cleanup supervisor_pilot  316359 4084507
[2025-10-13 01:55:17] 2025-10-13 05:55:17,454 [wrapper] Test setup, not cleaning
[2025-10-13 01:55:17] 2025-10-13 05:55:17,457 [wrapper] apfmon messages muted
[2025-10-13 01:55:17] 2025-10-13 05:55:17,459 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:55:17] 2025-10-13 05:55:17,461 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:55:17]  *** Error codes and diagnostics ***
[2025-10-13 01:55:17]     "exeErrorCode": 0,
[2025-10-13 01:55:17]     "exeErrorDiag": "",
[2025-10-13 01:55:17]     "pilotErrorCode": 0,
[2025-10-13 01:55:17]     "pilotErrorDiag": "",
[2025-10-13 01:55:17]  *** Listing of results directory ***
[2025-10-13 01:55:17] total 414064
[2025-10-13 01:55:17] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 20:11 pilot3.tar.gz
[2025-10-13 01:55:17] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 20:15 queuedata.json
[2025-10-13 01:55:17] -rwx------. 1 boincer umatlas     36292 Oct 12 20:17 runpilot2-wrapper.sh
[2025-10-13 01:55:17] -rw-r--r--. 1 boincer umatlas       100 Oct 13 01:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:55:17] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 01:02 run_atlas
[2025-10-13 01:55:17] -rw-r--r--. 1 boincer umatlas       105 Oct 13 01:02 job.xml
[2025-10-13 01:55:17] -rw-r--r--. 2 boincer umatlas 219318402 Oct 13 01:02 EVNT.46676267._004687.pool.root.1
[2025-10-13 01:55:17] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 01:02 start_atlas.sh
[2025-10-13 01:55:17] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 01:02 shared
[2025-10-13 01:55:17] -rw-r--r--. 2 boincer umatlas    569681 Oct 13 01:02 input.tar.gz
[2025-10-13 01:55:17] -rw-r--r--. 1 boincer umatlas         0 Oct 13 01:02 boinc_lockfile
[2025-10-13 01:55:17] -rw-r--r--. 1 boincer umatlas      2547 Oct 13 01:02 pandaJob.out
[2025-10-13 01:55:17] -rw-------. 1 boincer umatlas    974365 Oct 13 01:03 agis_schedconf.cvmfs.json
[2025-10-13 01:55:17] -rw-------. 1 boincer umatlas   1560580 Oct 13 01:03 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:55:17] drwx------. 5 boincer umatlas      4096 Oct 13 01:03 pilot3
[2025-10-13 01:55:17] -rw-r--r--. 1 boincer umatlas      7162 Oct 13 01:46 init_data.xml
[2025-10-13 01:55:17] -rw-------. 1 boincer umatlas 199273628 Oct 13 01:53 HITS.46676269._093001.pool.root.1
[2025-10-13 01:55:17] -rw-r--r--. 1 boincer umatlas       529 Oct 13 01:53 boinc_task_state.xml
[2025-10-13 01:55:17] -rw-------. 1 boincer umatlas        95 Oct 13 01:53 pilot_heartbeat.json
[2025-10-13 01:55:17] -rw-------. 1 boincer umatlas      1047 Oct 13 01:53 memory_monitor_summary.json
[2025-10-13 01:55:17] -rw-------. 1 boincer umatlas    302897 Oct 13 01:54 log.46676269._093001.job.log.tgz.1
[2025-10-13 01:55:17] -rw-------. 1 boincer umatlas      7769 Oct 13 01:54 heartbeat.json
[2025-10-13 01:55:17] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 01:55 boinc_mmap_file
[2025-10-13 01:55:17] -rw-r--r--. 1 boincer umatlas        27 Oct 13 01:55 wrapper_checkpoint.txt
[2025-10-13 01:55:17] -rw-------. 1 boincer umatlas      4825 Oct 13 01:55 pilotlog.txt
[2025-10-13 01:55:17] -rw-------. 1 boincer umatlas    453773 Oct 13 01:55 log.46676269._093001.job.log.1
[2025-10-13 01:55:17] -rw-------. 1 boincer umatlas       357 Oct 13 01:55 output.list
[2025-10-13 01:55:17] -rw-r--r--. 1 boincer umatlas       620 Oct 13 01:55 runtime_log
[2025-10-13 01:55:17] -rw-------. 1 boincer umatlas    778240 Oct 13 01:55 result.tar.gz
[2025-10-13 01:55:17] -rw-r--r--. 1 boincer umatlas      8698 Oct 13 01:55 runtime_log.err
[2025-10-13 01:55:17] -rw-------. 1 boincer umatlas       651 Oct 13 01:55 JshNDmbQLS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmgLVMDm53q05m.diag
[2025-10-13 01:55:17] -rw-r--r--. 1 boincer umatlas     22380 Oct 13 01:55 stderr.txt
[2025-10-13 01:55:17] HITS file was successfully produced:
[2025-10-13 01:55:17] -rw-------. 1 boincer umatlas 199273628 Oct 13 01:53 shared/HITS.pool.root.1
[2025-10-13 01:55:17]  *** Contents of shared directory: ***
[2025-10-13 01:55:17] total 410124
[2025-10-13 01:55:17] -rw-r--r--. 2 boincer umatlas 219318402 Oct 13 01:02 ATLAS.root_0
[2025-10-13 01:55:17] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 01:02 start_atlas.sh
[2025-10-13 01:55:17] -rw-r--r--. 2 boincer umatlas    569681 Oct 13 01:02 input.tar.gz
[2025-10-13 01:55:17] -rw-------. 1 boincer umatlas 199273628 Oct 13 01:53 HITS.pool.root.1
[2025-10-13 01:55:17] -rw-------. 1 boincer umatlas    778240 Oct 13 01:55 result.tar.gz
01:55:18 (4079964): run_atlas exited; CPU time 23148.517525
01:55:18 (4079964): called boinc_finish(0)

</stderr_txt>
]]>

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