Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:01:07 (49793): wrapper (7.7.26015): starting
21:01:07 (49793): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 21:01:07] Arguments: --nthreads 6
[2025-10-13 21:01:07] Threads: 6
[2025-10-13 21:01:07] Checking for CVMFS
[2025-10-13 21:01:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 21:01:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 21:01:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 21:01:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 21:01:08] 2.12.7.0 249871 7283 94564 151660 3 188 14056486 20971520 929 130560 0 12423201 99.996 251470 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-13 21:01:08] CVMFS is ok
[2025-10-13 21:01:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 21:01:08] Checking for apptainer binary...
[2025-10-13 21:01:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 21:01:08] Running /usr/bin/apptainer --version
[2025-10-13 21:01:08] apptainer version 1.4.0-1.el9
[2025-10-13 21:01:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 21:01:08] testio005
[2025-10-13 21:01:08] apptainer works
[2025-10-13 21:01:08] Set ATHENA_PROC_NUMBER=6
[2025-10-13 21:01:08] Set ATHENA_CORE_NUMBER=6
[2025-10-13 21:01:08] Starting ATLAS job with PandaID=6840970239
[2025-10-13 21:01:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 22:33:52]  *** The last 200 lines of the pilot log: ***
[2025-10-13 22:33:52] 2025-10-13 13:32:57,016 | INFO     | time since job start (5496s) is within the limit (172800.0s)
[2025-10-13 22:33:52] 2025-10-13 13:32:57,549 | INFO     | monitor loop #421: job 0:6840970239 is in state 'finished'
[2025-10-13 22:33:52] 2025-10-13 13:32:57,549 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:33:52] 2025-10-13 13:32:59,021 | INFO     | time since job start (5498s) is within the limit (172800.0s)
[2025-10-13 22:33:52] 2025-10-13 13:33:00,051 | INFO     | monitor loop #422: job 0:6840970239 is in state 'finished'
[2025-10-13 22:33:52] 2025-10-13 13:33:00,051 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:33:52] 2025-10-13 13:33:01,027 | INFO     | time since job start (5500s) is within the limit (172800.0s)
[2025-10-13 22:33:52] 2025-10-13 13:33:02,554 | INFO     | monitor loop #423: job 0:6840970239 is in state 'finished'
[2025-10-13 22:33:52] 2025-10-13 13:33:02,555 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:33:52] 2025-10-13 13:33:03,033 | INFO     | time since job start (5502s) is within the limit (172800.0s)
[2025-10-13 22:33:52] 2025-10-13 13:33:04,133 | INFO     | PID=53587 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 22:33:52] 2025-10-13 13:33:04,133 | INFO     | .. there are 2 such processes running
[2025-10-13 22:33:52] 2025-10-13 13:33:05,057 | INFO     | monitor loop #424: job 0:6840970239 is in state 'finished'
[2025-10-13 22:33:52] 2025-10-13 13:33:05,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:33:52] 2025-10-13 13:33:05,133 | INFO     | time since job start (5504s) is within the limit (172800.0s)
[2025-10-13 22:33:52] 2025-10-13 13:33:07,138 | INFO     | time since job start (5506s) is within the limit (172800.0s)
[2025-10-13 22:33:52] 2025-10-13 13:33:07,560 | INFO     | monitor loop #425: job 0:6840970239 is in state 'finished'
[2025-10-13 22:33:52] 2025-10-13 13:33:07,560 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:33:52] 2025-10-13 13:33:09,144 | INFO     | time since job start (5508s) is within the limit (172800.0s)
[2025-10-13 22:33:52] 2025-10-13 13:33:10,063 | INFO     | monitor loop #426: job 0:6840970239 is in state 'finished'
[2025-10-13 22:33:52] 2025-10-13 13:33:10,063 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:33:52] 2025-10-13 13:33:11,149 | INFO     | time since job start (5510s) is within the limit (172800.0s)
[2025-10-13 22:33:52] 2025-10-13 13:33:12,566 | INFO     | monitor loop #427: job 0:6840970239 is in state 'finished'
[2025-10-13 22:33:52] 2025-10-13 13:33:12,566 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:33:52] 2025-10-13 13:33:13,152 | INFO     | time since job start (5512s) is within the limit (172800.0s)
[2025-10-13 22:33:52] 2025-10-13 13:33:15,069 | INFO     | monitor loop #428: job 0:6840970239 is in state 'finished'
[2025-10-13 22:33:52] 2025-10-13 13:33:15,070 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:33:52] 2025-10-13 13:33:15,158 | INFO     | time since job start (5514s) is within the limit (172800.0s)
[2025-10-13 22:33:52] 2025-10-13 13:33:17,163 | INFO     | time since job start (5516s) is within the limit (172800.0s)
[2025-10-13 22:33:52] 2025-10-13 13:33:17,571 | INFO     | monitor loop #429: job 0:6840970239 is in state 'finished'
[2025-10-13 22:33:52] 2025-10-13 13:33:17,572 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:33:52] 2025-10-13 13:33:19,169 | INFO     | time since job start (5518s) is within the limit (172800.0s)
[2025-10-13 22:33:52] 2025-10-13 13:33:20,074 | INFO     | monitor loop #430: job 0:6840970239 is in state 'finished'
[2025-10-13 22:33:52] 2025-10-13 13:33:20,075 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:33:52] 2025-10-13 13:33:20,805 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 22:33:52] 2025-10-13 13:33:20,808 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3306.3635000000004
[2025-10-13 22:33:52] 2025-10-13 13:33:20,810 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6840970239/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 22:33:52] 2025-10-13 13:33:20,810 | INFO     | extracted standard info from prmon json
[2025-10-13 22:33:52] 2025-10-13 13:33:20,810 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 22:33:52] 2025-10-13 13:33:20,810 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 22:33:52] 2025-10-13 13:33:20,810 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 22:33:52] 2025-10-13 13:33:20,810 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 22:33:52] 2025-10-13 13:33:20,811 | INFO     | fitting pss+swap vs Time
[2025-10-13 22:33:52] 2025-10-13 13:33:20,812 | INFO     | sum of square deviations: 170944600.5
[2025-10-13 22:33:52] 2025-10-13 13:33:20,812 | INFO     | sum of deviations: -908410871.5000005
[2025-10-13 22:33:52] 2025-10-13 13:33:20,812 | INFO     | mean x: 1760359679.5
[2025-10-13 22:33:52] 2025-10-13 13:33:20,812 | INFO     | mean y: 2468947.1341463416
[2025-10-13 22:33:52] 2025-10-13 13:33:20,812 | INFO     | -- intersect: 9357136283.398191
[2025-10-13 22:33:52] 2025-10-13 13:33:20,812 | INFO     | intersect: 9357136283.398191
[2025-10-13 22:33:52] 2025-10-13 13:33:20,812 | INFO     | chi2: 0.050198259102855115
[2025-10-13 22:33:52] 2025-10-13 13:33:20,812 | INFO     | -- intersect: 9357136283.398191
[2025-10-13 22:33:52] 2025-10-13 13:33:20,812 | INFO     | current memory leak: -5.31 B/s (using 82 data points, chi2=0.05)
[2025-10-13 22:33:52] 2025-10-13 13:33:20,813 | INFO     | could have reported an average CPU frequency of 3313 MHz (6 samples)
[2025-10-13 22:33:52] 2025-10-13 13:33:20,813 | INFO     | ..............................
[2025-10-13 22:33:52] 2025-10-13 13:33:20,813 | INFO     | . Timing measurements:
[2025-10-13 22:33:52] 2025-10-13 13:33:20,813 | INFO     | . get job = 0 s
[2025-10-13 22:33:52] 2025-10-13 13:33:20,813 | INFO     | . initial setup = 7 s
[2025-10-13 22:33:52] 2025-10-13 13:33:20,813 | INFO     | . payload setup = 4 s
[2025-10-13 22:33:52] 2025-10-13 13:33:20,813 | INFO     | . stage-in = 0 s
[2025-10-13 22:33:52] 2025-10-13 13:33:20,813 | INFO     | . payload execution = 5421 s
[2025-10-13 22:33:52] 2025-10-13 13:33:20,813 | INFO     | . stage-out = 0 s
[2025-10-13 22:33:52] 2025-10-13 13:33:20,813 | INFO     | . log creation = 0 s
[2025-10-13 22:33:52] 2025-10-13 13:33:20,813 | INFO     | ..............................
[2025-10-13 22:33:52] 2025-10-13 13:33:20,875 | INFO     | 
[2025-10-13 22:33:52] 2025-10-13 13:33:20,875 | INFO     | job summary report
[2025-10-13 22:33:52] 2025-10-13 13:33:20,875 | INFO     | --------------------------------------------------
[2025-10-13 22:33:52] 2025-10-13 13:33:20,875 | INFO     | PanDA job id: 6840970239
[2025-10-13 22:33:52] 2025-10-13 13:33:20,875 | INFO     | task id: 46676269
[2025-10-13 22:33:52] 2025-10-13 13:33:20,875 | INFO     | errors: (none)
[2025-10-13 22:33:52] 2025-10-13 13:33:20,875 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 22:33:52] 2025-10-13 13:33:20,875 | INFO     | pilot state: finished 
[2025-10-13 22:33:52] 2025-10-13 13:33:20,875 | INFO     | transexitcode: 0
[2025-10-13 22:33:52] 2025-10-13 13:33:20,875 | INFO     | exeerrorcode: 0
[2025-10-13 22:33:52] 2025-10-13 13:33:20,875 | INFO     | exeerrordiag: 
[2025-10-13 22:33:52] 2025-10-13 13:33:20,876 | INFO     | exitcode: 0
[2025-10-13 22:33:52] 2025-10-13 13:33:20,876 | INFO     | exitmsg: OK
[2025-10-13 22:33:52] 2025-10-13 13:33:20,876 | INFO     | cpuconsumptiontime: 30026 s
[2025-10-13 22:33:52] 2025-10-13 13:33:20,876 | INFO     | nevents: 400
[2025-10-13 22:33:52] 2025-10-13 13:33:20,876 | INFO     | neventsw: 0
[2025-10-13 22:33:52] 2025-10-13 13:33:20,876 | INFO     | pid: 60360
[2025-10-13 22:33:52] 2025-10-13 13:33:20,876 | INFO     | pgrp: 60360
[2025-10-13 22:33:52] 2025-10-13 13:33:20,876 | INFO     | corecount: 6
[2025-10-13 22:33:52] 2025-10-13 13:33:20,876 | INFO     | event service: False
[2025-10-13 22:33:52] 2025-10-13 13:33:20,876 | INFO     | sizes: {0: 2348630, 1: 2348885, 4: 2349147, 11: 2349175, 5429: 2375744, 5430: 2384742, 5431: 2384926, 5505: 2385120}
[2025-10-13 22:33:52] 2025-10-13 13:33:20,876 | INFO     | --------------------------------------------------
[2025-10-13 22:33:52] 2025-10-13 13:33:20,876 | INFO     | 
[2025-10-13 22:33:52] 2025-10-13 13:33:20,877 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-13 22:33:52] 2025-10-13 13:33:20,891 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 22:33:52] 2025-10-13 13:33:20,891 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 22:33:52] 2025-10-13 13:33:20,891 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 22:33:52] 2025-10-13 13:33:20,891 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 22:33:52] 2025-10-13 13:33:20,891 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 22:33:52] 2025-10-13 13:33:20,891 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 22:33:52] 2025-10-13 13:33:20,891 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 22:33:52] 2025-10-13 13:33:20,892 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 22:33:52] 2025-10-13 13:33:20,892 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 22:33:52] 2025-10-13 13:33:20,892 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 22:33:52] 2025-10-13 13:33:20,892 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 22:33:52] 2025-10-13 13:33:20,892 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 22:33:52] 2025-10-13 13:33:20,892 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 22:33:52] 2025-10-13 13:33:20,892 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 22:33:52] 2025-10-13 13:33:20,892 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 22:33:52] 2025-10-13 13:33:20,892 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 22:33:52] 2025-10-13 13:33:20,892 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 22:33:52] 2025-10-13 13:33:20,892 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 22:33:52] 2025-10-13 13:33:20,893 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 22:33:52] 2025-10-13 13:33:20,893 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 22:33:52] 2025-10-13 13:33:20,893 | INFO     | job 6840970239 has completed (purged errors)
[2025-10-13 22:33:52] 2025-10-13 13:33:20,893 | INFO     | overall cleanup function is called
[2025-10-13 22:33:52] 2025-10-13 13:33:21,900 | INFO     | --- collectZombieJob: --- 10, [60360]
[2025-10-13 22:33:52] 2025-10-13 13:33:21,900 | INFO     | zombie collector waiting for pid 60360
[2025-10-13 22:33:52] 2025-10-13 13:33:21,900 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 22:33:52] 2025-10-13 13:33:21,900 | INFO     | collected zombie processes
[2025-10-13 22:33:52] 2025-10-13 13:33:21,901 | INFO     | will attempt to kill all subprocesses of pid=60360
[2025-10-13 22:33:52] 2025-10-13 13:33:22,004 | INFO     | process IDs to be killed: [60360] (in reverse order)
[2025-10-13 22:33:52] 2025-10-13 13:33:22,037 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 22:33:52] 2025-10-13 13:33:22,037 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 22:33:52] 2025-10-13 13:33:22,040 | INFO     | did not find any defunct processes belonging to 60360
[2025-10-13 22:33:52] 2025-10-13 13:33:22,042 | INFO     | did not find any defunct processes belonging to 60360
[2025-10-13 22:33:52] 2025-10-13 13:33:22,042 | INFO     | ready for new job
[2025-10-13 22:33:52] 2025-10-13 13:33:22,043 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 22:33:52] 2025-10-13 13:33:22,044 | INFO     | ***************************************
[2025-10-13 22:33:52] 2025-10-13 13:33:22,044 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 22:33:52] 2025-10-13 13:33:22,044 | INFO     | ***************************************
[2025-10-13 22:33:52] 2025-10-13 13:33:22,044 | INFO     | 
[2025-10-13 22:33:52] 2025-10-13 13:33:22,045 | INFO     | architecture information:
[2025-10-13 22:33:52] 2025-10-13 13:33:22,045 | INFO     | executing command: cat /etc/os-release
[2025-10-13 22:33:52] 2025-10-13 13:33:22,056 | INFO     | cat /etc/os-release:
[2025-10-13 22:33:52] NAME="CentOS Linux"
[2025-10-13 22:33:52] VERSION="7 (Core)"
[2025-10-13 22:33:52] ID="centos"
[2025-10-13 22:33:52] ID_LIKE="rhel fedora"
[2025-10-13 22:33:52] VERSION_ID="7"
[2025-10-13 22:33:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 22:33:52] ANSI_COLOR="0;31"
[2025-10-13 22:33:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 22:33:52] HOME_URL="https://www.centos.org/"
[2025-10-13 22:33:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 22:33:52] 
[2025-10-13 22:33:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 22:33:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 22:33:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 22:33:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 22:33:52] 
[2025-10-13 22:33:52] 2025-10-13 13:33:22,056 | INFO     | ***************************************
[2025-10-13 22:33:52] 2025-10-13 13:33:22,559 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-13 22:33:52] 2025-10-13 13:33:22,569 | INFO     | sufficient remaining disk space (97653882880 B)
[2025-10-13 22:33:52] 2025-10-13 13:33:22,569 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 22:33:52] 2025-10-13 13:33:22,569 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 22:33:52] 2025-10-13 13:33:22,569 | INFO     | update_server=False
[2025-10-13 22:33:52] 2025-10-13 13:33:22,569 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 22:33:52] 2025-10-13 13:33:22,569 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:33:52] 2025-10-13 13:33:22,569 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 22:33:52] 2025-10-13 13:33:22,577 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 22:33:52] 2025-10-13 13:33:22,577 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 22:33:52] 2025-10-13 13:33:22,578 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:33:52] 2025-10-13 13:33:22,578 | INFO     | will abort loop
[2025-10-13 22:33:52] 2025-10-13 13:33:23,215 | INFO     | all payload control threads have been joined
[2025-10-13 22:33:52] 2025-10-13 13:33:23,380 | INFO     | all data control threads have been joined
[2025-10-13 22:33:52] 2025-10-13 13:33:23,448 | INFO     | all job control threads have been joined
[2025-10-13 22:33:52] 2025-10-13 13:33:23,572 | INFO     | [job] retrieve thread has finished
[2025-10-13 22:33:52] 2025-10-13 13:33:23,575 | INFO     | [job] queue monitor thread has finished
[2025-10-13 22:33:52] 2025-10-13 13:33:23,575 | INFO     | [data] copytool_in thread has finished
[2025-10-13 22:33:52] 2025-10-13 13:33:23,583 | INFO     | [job] job monitor thread has finished
[2025-10-13 22:33:52] 2025-10-13 13:33:23,648 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 22:33:52] 2025-10-13 13:33:24,085 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 22:33:52] 2025-10-13 13:33:24,221 | INFO     | [payload] control thread has finished
[2025-10-13 22:33:52] 2025-10-13 13:33:24,282 | INFO     | [job] validate thread has finished
[2025-10-13 22:33:52] 2025-10-13 13:33:24,372 | INFO     | [payload] failed_post thread has finished
[2025-10-13 22:33:52] 2025-10-13 13:33:24,385 | INFO     | [data] control thread has finished
[2025-10-13 22:33:52] 2025-10-13 13:33:24,453 | INFO     | [job] control thread has finished
[2025-10-13 22:33:52] 2025-10-13 13:33:24,549 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 22:33:52] 2025-10-13 13:33:24,575 | INFO     | [data] copytool_out thread has finished
[2025-10-13 22:33:52] 2025-10-13 13:33:24,609 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 22:33:52] 2025-10-13 13:33:24,784 | INFO     | [payload] validate_post thread has finished
[2025-10-13 22:33:52] 2025-10-13 13:33:25,701 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 22:33:52] 2025-10-13 13:33:29,593 | INFO     | [monitor] cgroup control has ended
[2025-10-13 22:33:52] 2025-10-13 13:33:29,707 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 22:33:52] 2025-10-13 13:33:30,632 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140370485270336)>', '<ExcThread(monitor, started 140369706600192)>']
[2025-10-13 22:33:52] 2025-10-13 13:33:35,657 | INFO     | all workflow threads have been joined
[2025-10-13 22:33:52] 2025-10-13 13:33:35,657 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 22:33:52] 2025-10-13 13:33:35,658 | INFO     | traces error code: 0
[2025-10-13 22:33:52] 2025-10-13 13:33:35,658 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 22:33:52] 2025-10-13 13:33:52,337 | INFO     | PID=53587 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 22:33:52] 2025-10-13 13:33:52,339 | INFO     | .. there are 2 such processes running
[2025-10-13 22:33:52] 2025-10-13 13:33:52,339 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 22:33:52] 2025-10-13 13:33:52,339 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 22:33:52] 2025-10-13 13:33:52,339 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 22:33:52] 2025-10-13 13:33:52,339 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 22:33:52] 2025-10-13 13:33:52,340 | INFO     | [monitor] control thread has ended
[2025-10-13 22:33:52] 2025-10-13 13:33:52,413 [wrapper] ==== pilot stdout END ====
[2025-10-13 22:33:52] 2025-10-13 13:33:52,415 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 22:33:52] 2025-10-13 13:33:52,417 [wrapper] pilotpid: 53587
[2025-10-13 22:33:52] 2025-10-13 13:33:52,420 [wrapper] Pilot exit status: 0
[2025-10-13 22:33:52] 2025-10-13 13:33:52,427 [wrapper] pandaids: 6840970239
[2025-10-13 22:33:52] 2025-10-13 13:33:52,458 [wrapper] cleanup supervisor_pilot   97430 53588
[2025-10-13 22:33:52] 2025-10-13 13:33:52,460 [wrapper] Test setup, not cleaning
[2025-10-13 22:33:52] 2025-10-13 13:33:52,462 [wrapper] apfmon messages muted
[2025-10-13 22:33:52] 2025-10-13 13:33:52,464 [wrapper] ==== wrapper stdout END ====
[2025-10-13 22:33:52] 2025-10-13 13:33:52,466 [wrapper] ==== wrapper stderr END ====
[2025-10-13 22:33:52]  *** Error codes and diagnostics ***
[2025-10-13 22:33:52]     "exeErrorCode": 0,
[2025-10-13 22:33:52]     "exeErrorDiag": "",
[2025-10-13 22:33:52]     "pilotErrorCode": 0,
[2025-10-13 22:33:52]     "pilotErrorDiag": "",
[2025-10-13 22:33:52]  *** Listing of results directory ***
[2025-10-13 22:33:52] total 417960
[2025-10-13 22:33:52] -rwx------. 1 boinc boinc     36292 Oct 13 09:02 runpilot2-wrapper.sh
[2025-10-13 22:33:52] -rw-r--r--. 1 boinc boinc      5112 Oct 13 09:02 queuedata.json
[2025-10-13 22:33:52] -rw-r--r--. 1 boinc boinc    557409 Oct 13 09:02 pilot3.tar.gz
[2025-10-13 22:33:52] -rw-r--r--. 1 boinc boinc       100 Oct 13 21:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 22:33:52] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 21:01 run_atlas
[2025-10-13 22:33:52] -rw-r--r--. 1 boinc boinc       105 Oct 13 21:01 job.xml
[2025-10-13 22:33:52] -rw-r--r--. 2 boinc boinc 220987066 Oct 13 21:01 EVNT.46676267._004675.pool.root.1
[2025-10-13 22:33:52] -rw-r--r--. 2 boinc boinc     15120 Oct 13 21:01 start_atlas.sh
[2025-10-13 22:33:52] drwxrwx--x. 2 boinc boinc        68 Oct 13 21:01 shared
[2025-10-13 22:33:52] -rw-r--r--. 2 boinc boinc    569672 Oct 13 21:01 input.tar.gz
[2025-10-13 22:33:52] -rw-r--r--. 1 boinc boinc         0 Oct 13 21:01 boinc_lockfile
[2025-10-13 22:33:52] -rw-r--r--. 1 boinc boinc      2550 Oct 13 21:01 pandaJob.out
[2025-10-13 22:33:52] -rw-------. 1 boinc boinc    972497 Oct 13 21:01 agis_schedconf.cvmfs.json
[2025-10-13 22:33:52] -rw-------. 1 boinc boinc   1560580 Oct 13 21:01 agis_ddmendpoints.agis.ALL.json
[2025-10-13 22:33:52] drwx------. 5 boinc boinc      4096 Oct 13 21:01 pilot3
[2025-10-13 22:33:52] -rw-r--r--. 1 boinc boinc      9368 Oct 13 21:31 init_data.xml
[2025-10-13 22:33:52] -rw-------. 1 boinc boinc 200901593 Oct 13 22:31 HITS.46676269._092659.pool.root.1
[2025-10-13 22:33:52] -rw-------. 1 boinc boinc      1015 Oct 13 22:32 memory_monitor_summary.json
[2025-10-13 22:33:52] -rw-------. 1 boinc boinc    310105 Oct 13 22:32 log.46676269._092659.job.log.tgz.1
[2025-10-13 22:33:52] -rw-r--r--. 1 boinc boinc       529 Oct 13 22:32 boinc_task_state.xml
[2025-10-13 22:33:52] -rw-------. 1 boinc boinc        95 Oct 13 22:33 pilot_heartbeat.json
[2025-10-13 22:33:52] -rw-------. 1 boinc boinc      7748 Oct 13 22:33 heartbeat.json
[2025-10-13 22:33:52] -rw-r--r--. 1 boinc boinc      8192 Oct 13 22:33 boinc_mmap_file
[2025-10-13 22:33:52] -rw-r--r--. 1 boinc boinc        27 Oct 13 22:33 wrapper_checkpoint.txt
[2025-10-13 22:33:52] -rw-------. 1 boinc boinc       820 Oct 13 22:33 pilotlog.txt
[2025-10-13 22:33:52] -rw-------. 1 boinc boinc    802259 Oct 13 22:33 log.46676269._092659.job.log.1
[2025-10-13 22:33:52] -rw-------. 1 boinc boinc       357 Oct 13 22:33 output.list
[2025-10-13 22:33:52] -rw-r--r--. 1 boinc boinc       620 Oct 13 22:33 runtime_log
[2025-10-13 22:33:52] -rw-------. 1 boinc boinc   1126400 Oct 13 22:33 result.tar.gz
[2025-10-13 22:33:52] -rw-r--r--. 1 boinc boinc      8661 Oct 13 22:33 runtime_log.err
[2025-10-13 22:33:52] -rw-------. 1 boinc boinc       642 Oct 13 22:33 rd1MDmxBLS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmMKVMDmOlXPzm.diag
[2025-10-13 22:33:52] -rw-r--r--. 1 boinc boinc     21944 Oct 13 22:33 stderr.txt
[2025-10-13 22:33:52] HITS file was successfully produced:
[2025-10-13 22:33:52] -rw-------. 1 boinc boinc 200901593 Oct 13 22:31 shared/HITS.pool.root.1
[2025-10-13 22:33:52]  *** Contents of shared directory: ***
[2025-10-13 22:33:52] total 413680
[2025-10-13 22:33:52] -rw-r--r--. 2 boinc boinc 220987066 Oct 13 21:01 ATLAS.root_0
[2025-10-13 22:33:52] -rw-r--r--. 2 boinc boinc     15120 Oct 13 21:01 start_atlas.sh
[2025-10-13 22:33:52] -rw-r--r--. 2 boinc boinc    569672 Oct 13 21:01 input.tar.gz
[2025-10-13 22:33:52] -rw-------. 1 boinc boinc 200901593 Oct 13 22:31 HITS.pool.root.1
[2025-10-13 22:33:52] -rw-------. 1 boinc boinc   1126400 Oct 13 22:33 result.tar.gz
22:33:53 (49793): run_atlas exited; CPU time 30084.538851
22:33:53 (49793): called boinc_finish(0)

</stderr_txt>
]]>

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