Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:38:36 (1414249): wrapper (7.7.26015): starting
00:38:36 (1414249): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 00:38:36] Arguments: --nthreads 8
[2025-10-13 00:38:36] Threads: 8
[2025-10-13 00:38:36] Checking for CVMFS
[2025-10-13 00:38:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:38:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:38:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:38:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:38:37] 2.13.2.0 9460 35199 229476 151649 0 188 31748929 32935936 2765 16776704 0 103497625 99.705 79614114 30073 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 00:38:37] CVMFS is ok
[2025-10-13 00:38:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:38:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:38:37] Further information can be found at the LHC@home message board.
[2025-10-13 00:38:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:38:37] Checking for apptainer binary...
[2025-10-13 00:38:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:38:37] Running /usr/bin/apptainer --version
[2025-10-13 00:38:37] apptainer version 1.4.3-1.el9
[2025-10-13 00:38:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:38:37] c-4-11.aglt2.org
[2025-10-13 00:38:37] apptainer works
[2025-10-13 00:38:37] Set ATHENA_PROC_NUMBER=8
[2025-10-13 00:38:37] Set ATHENA_CORE_NUMBER=8
[2025-10-13 00:38:37] Starting ATLAS job with PandaID=6840750900
[2025-10-13 00:38:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 02:05:00]  *** The last 200 lines of the pilot log: ***
[2025-10-13 02:05:00]  protocol_id=None
[2025-10-13 02:05:00]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 02:05:00]  replicas=None
[2025-10-13 02:05:00]  scope=mc23_13p6TeV
[2025-10-13 02:05:00]  status=None
[2025-10-13 02:05:00]  status_code=0
[2025-10-13 02:05:00]  storage_token=
[2025-10-13 02:05:00]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840750900/log.46676269._090119.job.log.tgz.1
[2025-10-13 02:05:00]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/19/59/log.46676269._090119.job.log.tgz.1
[2025-10-13 02:05:00]  workdir=None
[2025-10-13 02:05:00] ]
[2025-10-13 02:05:00] 2025-10-13 06:03:55,801 | INFO     | transferring file log.46676269._090119.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840750900/log.46676269._090119.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 02:05:00] 2025-10-13 06:03:55,801 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840750900/log.46676269._090119.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._090119.job
[2025-10-13 02:05:00] 2025-10-13 06:03:55,818 | INFO     | adding to output.list: log.46676269._090119.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/19/59/log.46676269._090119.job.log.tg
[2025-10-13 02:05:00] 2025-10-13 06:03:55,819 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 02:05:00] 2025-10-13 06:03:55,819 | INFO     | summary of transferred files:
[2025-10-13 02:05:00] 2025-10-13 06:03:55,819 | INFO     |  -- lfn=log.46676269._090119.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 02:05:00] 2025-10-13 06:03:55,819 | INFO     | stage-out finished correctly
[2025-10-13 02:05:00] 2025-10-13 06:03:56,959 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 02:05:00] 2025-10-13 06:03:57,060 | INFO     | time since job start (5109s) is within the limit (172800.0s)
[2025-10-13 02:05:00] 2025-10-13 06:03:57,216 | INFO     | monitor loop #381: job 0:6840750900 is in state 'finished'
[2025-10-13 02:05:00] 2025-10-13 06:03:57,216 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 02:05:00] 2025-10-13 06:03:57,719 | INFO     | job 6840750900 has state=finished
[2025-10-13 02:05:00] 2025-10-13 06:03:57,719 | INFO     | preparing for final server update for job 6840750900 in state='finished'
[2025-10-13 02:05:00] 2025-10-13 06:03:57,720 | INFO     | this job has now completed (state=finished)
[2025-10-13 02:05:00] 2025-10-13 06:03:57,720 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 02:05:00] 2025-10-13 06:03:57,720 | INFO     | log transfer has been attempted: DONE
[2025-10-13 02:05:00] 2025-10-13 06:03:57,720 | INFO     | job 6840750900 has finished - writing final server update
[2025-10-13 02:05:00] 2025-10-13 06:03:57,720 | INFO     | total number of processed events: 400 (read)
[2025-10-13 02:05:00] 2025-10-13 06:03:57,721 | INFO     | executing command: lscpu
[2025-10-13 02:05:00] 2025-10-13 06:03:57,767 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 02:05:00] 2025-10-13 06:03:59,066 | INFO     | time since job start (5111s) is within the limit (172800.0s)
[2025-10-13 02:05:00] 2025-10-13 06:03:59,719 | INFO     | monitor loop #382: job 0:6840750900 is in state 'finished'
[2025-10-13 02:05:00] 2025-10-13 06:03:59,719 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 02:05:00] 2025-10-13 06:04:01,071 | INFO     | time since job start (5113s) is within the limit (172800.0s)
[2025-10-13 02:05:00] 2025-10-13 06:04:01,175 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 02:05:00] 2025-10-13 06:04:01,179 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2880.067350000001
[2025-10-13 02:05:00] 2025-10-13 06:04:01,183 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840750900/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 02:05:00] 2025-10-13 06:04:01,183 | INFO     | extracted standard info from prmon json
[2025-10-13 02:05:00] 2025-10-13 06:04:01,184 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 02:05:00] 2025-10-13 06:04:01,184 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 02:05:00] 2025-10-13 06:04:01,184 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 02:05:00] 2025-10-13 06:04:01,184 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 02:05:00] 2025-10-13 06:04:01,185 | INFO     | fitting pss+swap vs Time
[2025-10-13 02:05:00] 2025-10-13 06:04:01,185 | INFO     | sum of square deviations: 141539398.0
[2025-10-13 02:05:00] 2025-10-13 06:04:01,186 | INFO     | sum of deviations: -5041754554.000001
[2025-10-13 02:05:00] 2025-10-13 06:04:01,186 | INFO     | mean x: 1760332975.0
[2025-10-13 02:05:00] 2025-10-13 06:04:01,186 | INFO     | mean y: 2220250.298701299
[2025-10-13 02:05:00] 2025-10-13 06:04:01,186 | INFO     | -- intersect: 62706788156.27933
[2025-10-13 02:05:00] 2025-10-13 06:04:01,186 | INFO     | intersect: 62706788156.27933
[2025-10-13 02:05:00] 2025-10-13 06:04:01,186 | INFO     | chi2: 0.05226769323764474
[2025-10-13 02:05:00] 2025-10-13 06:04:01,186 | INFO     | -- intersect: 62706788156.27933
[2025-10-13 02:05:00] 2025-10-13 06:04:01,186 | INFO     | current memory leak: -35.62 B/s (using 77 data points, chi2=0.05)
[2025-10-13 02:05:00] 2025-10-13 06:04:01,186 | INFO     | could have reported an average CPU frequency of 2830 MHz (6 samples)
[2025-10-13 02:05:00] 2025-10-13 06:04:01,187 | INFO     | ..............................
[2025-10-13 02:05:00] 2025-10-13 06:04:01,187 | INFO     | . Timing measurements:
[2025-10-13 02:05:00] 2025-10-13 06:04:01,187 | INFO     | . get job = 0 s
[2025-10-13 02:05:00] 2025-10-13 06:04:01,187 | INFO     | . initial setup = 3 s
[2025-10-13 02:05:00] 2025-10-13 06:04:01,187 | INFO     | . payload setup = 4 s
[2025-10-13 02:05:00] 2025-10-13 06:04:01,187 | INFO     | . stage-in = 0 s
[2025-10-13 02:05:00] 2025-10-13 06:04:01,187 | INFO     | . payload execution = 5082 s
[2025-10-13 02:05:00] 2025-10-13 06:04:01,187 | INFO     | . stage-out = 0 s
[2025-10-13 02:05:00] 2025-10-13 06:04:01,187 | INFO     | . log creation = 0 s
[2025-10-13 02:05:00] 2025-10-13 06:04:01,187 | INFO     | ..............................
[2025-10-13 02:05:00] 2025-10-13 06:04:01,603 | INFO     | 
[2025-10-13 02:05:00] 2025-10-13 06:04:01,603 | INFO     | job summary report
[2025-10-13 02:05:00] 2025-10-13 06:04:01,603 | INFO     | --------------------------------------------------
[2025-10-13 02:05:00] 2025-10-13 06:04:01,603 | INFO     | PanDA job id: 6840750900
[2025-10-13 02:05:00] 2025-10-13 06:04:01,603 | INFO     | task id: 46676269
[2025-10-13 02:05:00] 2025-10-13 06:04:01,603 | INFO     | errors: (none)
[2025-10-13 02:05:00] 2025-10-13 06:04:01,604 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 02:05:00] 2025-10-13 06:04:01,604 | INFO     | pilot state: finished 
[2025-10-13 02:05:00] 2025-10-13 06:04:01,604 | INFO     | transexitcode: 0
[2025-10-13 02:05:00] 2025-10-13 06:04:01,604 | INFO     | exeerrorcode: 0
[2025-10-13 02:05:00] 2025-10-13 06:04:01,604 | INFO     | exeerrordiag: 
[2025-10-13 02:05:00] 2025-10-13 06:04:01,604 | INFO     | exitcode: 0
[2025-10-13 02:05:00] 2025-10-13 06:04:01,604 | INFO     | exitmsg: OK
[2025-10-13 02:05:00] 2025-10-13 06:04:01,604 | INFO     | cpuconsumptiontime: 37398 s
[2025-10-13 02:05:00] 2025-10-13 06:04:01,605 | INFO     | nevents: 400
[2025-10-13 02:05:00] 2025-10-13 06:04:01,605 | INFO     | neventsw: 0
[2025-10-13 02:05:00] 2025-10-13 06:04:01,605 | INFO     | pid: 1425197
[2025-10-13 02:05:00] 2025-10-13 06:04:01,605 | INFO     | pgrp: 1425197
[2025-10-13 02:05:00] 2025-10-13 06:04:01,605 | INFO     | corecount: 8
[2025-10-13 02:05:00] 2025-10-13 06:04:01,605 | INFO     | event service: False
[2025-10-13 02:05:00] 2025-10-13 06:04:01,605 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 5090: 2375534, 5091: 2375533, 5093: 2384615, 5094: 2384799, 5098: 2384993}
[2025-10-13 02:05:00] 2025-10-13 06:04:01,605 | INFO     | --------------------------------------------------
[2025-10-13 02:05:00] 2025-10-13 06:04:01,605 | INFO     | 
[2025-10-13 02:05:00] 2025-10-13 06:04:01,606 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 02:05:00] 2025-10-13 06:04:01,622 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 02:05:00] 2025-10-13 06:04:01,623 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 02:05:00] 2025-10-13 06:04:01,623 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 02:05:00] 2025-10-13 06:04:01,623 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 02:05:00] 2025-10-13 06:04:01,623 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 02:05:00] 2025-10-13 06:04:01,623 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 02:05:00] 2025-10-13 06:04:01,623 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 02:05:00] 2025-10-13 06:04:01,623 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 02:05:00] 2025-10-13 06:04:01,624 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 02:05:00] 2025-10-13 06:04:01,624 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 02:05:00] 2025-10-13 06:04:01,624 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 02:05:00] 2025-10-13 06:04:01,624 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 02:05:00] 2025-10-13 06:04:01,624 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 02:05:00] 2025-10-13 06:04:01,625 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 02:05:00] 2025-10-13 06:04:01,625 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 02:05:00] 2025-10-13 06:04:01,625 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 02:05:00] 2025-10-13 06:04:01,625 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 02:05:00] 2025-10-13 06:04:01,625 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 02:05:00] 2025-10-13 06:04:01,625 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 02:05:00] 2025-10-13 06:04:01,625 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 02:05:00] 2025-10-13 06:04:01,625 | INFO     | job 6840750900 has completed (purged errors)
[2025-10-13 02:05:00] 2025-10-13 06:04:01,626 | INFO     | overall cleanup function is called
[2025-10-13 02:05:00] 2025-10-13 06:04:02,634 | INFO     | --- collectZombieJob: --- 10, [1425197]
[2025-10-13 02:05:00] 2025-10-13 06:04:02,634 | INFO     | zombie collector waiting for pid 1425197
[2025-10-13 02:05:00] 2025-10-13 06:04:02,634 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 02:05:00] 2025-10-13 06:04:02,634 | INFO     | collected zombie processes
[2025-10-13 02:05:00] 2025-10-13 06:04:02,634 | INFO     | will attempt to kill all subprocesses of pid=1425197
[2025-10-13 02:05:00] 2025-10-13 06:04:02,891 | INFO     | process IDs to be killed: [1425197] (in reverse order)
[2025-10-13 02:05:00] 2025-10-13 06:04:02,957 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 02:05:00] 2025-10-13 06:04:02,958 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 02:05:00] 2025-10-13 06:04:02,965 | INFO     | did not find any defunct processes belonging to 1425197
[2025-10-13 02:05:00] 2025-10-13 06:04:02,972 | INFO     | did not find any defunct processes belonging to 1425197
[2025-10-13 02:05:00] 2025-10-13 06:04:02,972 | INFO     | ready for new job
[2025-10-13 02:05:00] 2025-10-13 06:04:02,972 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 02:05:00] 2025-10-13 06:04:02,974 | INFO     | ***************************************
[2025-10-13 02:05:00] 2025-10-13 06:04:02,974 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 02:05:00] 2025-10-13 06:04:02,974 | INFO     | ***************************************
[2025-10-13 02:05:00] 2025-10-13 06:04:02,974 | INFO     | 
[2025-10-13 02:05:00] 2025-10-13 06:04:02,988 | INFO     | architecture information:
[2025-10-13 02:05:00] 2025-10-13 06:04:02,989 | INFO     | executing command: cat /etc/os-release
[2025-10-13 02:05:00] 2025-10-13 06:04:03,001 | INFO     | cat /etc/os-release:
[2025-10-13 02:05:00] NAME="CentOS Linux"
[2025-10-13 02:05:00] VERSION="7 (Core)"
[2025-10-13 02:05:00] ID="centos"
[2025-10-13 02:05:00] ID_LIKE="rhel fedora"
[2025-10-13 02:05:00] VERSION_ID="7"
[2025-10-13 02:05:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 02:05:00] ANSI_COLOR="0;31"
[2025-10-13 02:05:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 02:05:00] HOME_URL="https://www.centos.org/"
[2025-10-13 02:05:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 02:05:00] 
[2025-10-13 02:05:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 02:05:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 02:05:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 02:05:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 02:05:00] 
[2025-10-13 02:05:00] 2025-10-13 06:04:03,001 | INFO     | ***************************************
[2025-10-13 02:05:00] 2025-10-13 06:04:03,505 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 02:05:00] 2025-10-13 06:04:03,518 | INFO     | sufficient remaining disk space (74204577792 B)
[2025-10-13 02:05:00] 2025-10-13 06:04:03,518 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 02:05:00] 2025-10-13 06:04:03,518 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 02:05:00] 2025-10-13 06:04:03,519 | INFO     | update_server=False
[2025-10-13 02:05:00] 2025-10-13 06:04:03,519 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 02:05:00] 2025-10-13 06:04:03,519 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 02:05:00] 2025-10-13 06:04:03,519 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:05:00] 2025-10-13 06:04:03,520 | INFO     | aborting loop
[2025-10-13 02:05:00] 2025-10-13 06:04:03,582 | INFO     | all data control threads have been joined
[2025-10-13 02:05:00] 2025-10-13 06:04:03,935 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 02:05:00] 2025-10-13 06:04:04,154 | INFO     | all payload control threads have been joined
[2025-10-13 02:05:00] 2025-10-13 06:04:04,524 | INFO     | [job] retrieve thread has finished
[2025-10-13 02:05:00] 2025-10-13 06:04:04,525 | INFO     | [job] job monitor thread has finished
[2025-10-13 02:05:00] 2025-10-13 06:04:04,588 | INFO     | [data] control thread has finished
[2025-10-13 02:05:00] 2025-10-13 06:04:04,856 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 02:05:00] 2025-10-13 06:04:04,977 | INFO     | [payload] validate_post thread has finished
[2025-10-13 02:05:00] 2025-10-13 06:04:05,058 | INFO     | all job control threads have been joined
[2025-10-13 02:05:00] 2025-10-13 06:04:05,159 | INFO     | [payload] control thread has finished
[2025-10-13 02:05:00] 2025-10-13 06:04:05,236 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 02:05:00] 2025-10-13 06:04:05,542 | INFO     | [data] copytool_in thread has finished
[2025-10-13 02:05:00] 2025-10-13 06:04:05,621 | INFO     | [job] validate thread has finished
[2025-10-13 02:05:00] 2025-10-13 06:04:05,941 | INFO     | [data] copytool_out thread has finished
[2025-10-13 02:05:00] 2025-10-13 06:04:05,994 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 02:05:00] 2025-10-13 06:04:06,016 | INFO     | [payload] failed_post thread has finished
[2025-10-13 02:05:00] 2025-10-13 06:04:06,063 | INFO     | [job] control thread has finished
[2025-10-13 02:05:00] 2025-10-13 06:04:06,250 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:05:00] 2025-10-13 06:04:07,256 | INFO     | [job] queue monitor thread has finished
[2025-10-13 02:05:00] 2025-10-13 06:04:07,525 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 02:05:00] 2025-10-13 06:04:13,568 | INFO     | job.realtimelogging is not enabled
[2025-10-13 02:05:00] 2025-10-13 06:04:14,573 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 02:05:00] 2025-10-13 06:04:34,457 | INFO     | PID=1418310 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 02:05:00] 2025-10-13 06:04:34,458 | INFO     | .. there are 4 such processes running
[2025-10-13 02:05:00] 2025-10-13 06:04:34,459 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 02:05:00] 2025-10-13 06:04:34,460 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 02:05:00] 2025-10-13 06:04:34,460 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 02:05:00] 2025-10-13 06:04:54,950 | INFO     | [monitor] cgroup control has ended
[2025-10-13 02:05:00] 2025-10-13 06:04:55,674 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140566133860160)>', '<ExcThread(monitor, started 140565781915392)>']
[2025-10-13 02:05:00] 2025-10-13 06:04:56,565 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 02:05:00] 2025-10-13 06:04:56,565 | INFO     | [monitor] control thread has ended
[2025-10-13 02:05:00] 2025-10-13 06:05:00,695 | INFO     | all workflow threads have been joined
[2025-10-13 02:05:00] 2025-10-13 06:05:00,695 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 02:05:00] 2025-10-13 06:05:00,696 | INFO     | traces error code: 0
[2025-10-13 02:05:00] 2025-10-13 06:05:00,696 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 02:05:00] 2025-10-13 06:05:00,822 [wrapper] ==== pilot stdout END ====
[2025-10-13 02:05:00] 2025-10-13 06:05:00,825 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 02:05:00] 2025-10-13 06:05:00,827 [wrapper] pilotpid: 1418310
[2025-10-13 02:05:00] 2025-10-13 06:05:00,830 [wrapper] Pilot exit status: 0
[2025-10-13 02:05:00] 2025-10-13 06:05:00,839 [wrapper] pandaids: 6840750900
[2025-10-13 02:05:00] 2025-10-13 06:05:00,886 [wrapper] cleanup supervisor_pilot 1580082 1418311
[2025-10-13 02:05:00] 2025-10-13 06:05:00,889 [wrapper] Test setup, not cleaning
[2025-10-13 02:05:00] 2025-10-13 06:05:00,891 [wrapper] apfmon messages muted
[2025-10-13 02:05:00] 2025-10-13 06:05:00,894 [wrapper] ==== wrapper stdout END ====
[2025-10-13 02:05:00] 2025-10-13 06:05:00,896 [wrapper] ==== wrapper stderr END ====
[2025-10-13 02:05:00]  *** Error codes and diagnostics ***
[2025-10-13 02:05:00]     "exeErrorCode": 0,
[2025-10-13 02:05:00]     "exeErrorDiag": "",
[2025-10-13 02:05:00]     "pilotErrorCode": 0,
[2025-10-13 02:05:00]     "pilotErrorDiag": "",
[2025-10-13 02:05:00]  *** Listing of results directory ***
[2025-10-13 02:05:00] total 411172
[2025-10-13 02:05:00] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 17:31 pilot3.tar.gz
[2025-10-13 02:05:00] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 17:36 queuedata.json
[2025-10-13 02:05:00] -rwx------. 1 boincer umatlas     36292 Oct 12 17:37 runpilot2-wrapper.sh
[2025-10-13 02:05:00] -rw-r--r--. 1 boincer umatlas       100 Oct 13 00:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 02:05:00] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 00:38 run_atlas
[2025-10-13 02:05:00] -rw-r--r--. 1 boincer umatlas       105 Oct 13 00:38 job.xml
[2025-10-13 02:05:00] -rw-r--r--. 2 boincer umatlas 220289929 Oct 13 00:38 EVNT.46676267._004837.pool.root.1
[2025-10-13 02:05:00] -rw-r--r--. 2 boincer umatlas    569678 Oct 13 00:38 input.tar.gz
[2025-10-13 02:05:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:38 start_atlas.sh
[2025-10-13 02:05:00] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 00:38 shared
[2025-10-13 02:05:00] -rw-r--r--. 1 boincer umatlas         0 Oct 13 00:38 boinc_lockfile
[2025-10-13 02:05:00] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 00:38 pandaJob.out
[2025-10-13 02:05:00] -rw-------. 1 boincer umatlas    974365 Oct 13 00:38 agis_schedconf.cvmfs.json
[2025-10-13 02:05:00] -rw-------. 1 boincer umatlas   1560580 Oct 13 00:38 agis_ddmendpoints.agis.ALL.json
[2025-10-13 02:05:00] drwx------. 5 boincer umatlas      4096 Oct 13 00:38 pilot3
[2025-10-13 02:05:00] -rw-r--r--. 1 boincer umatlas      6660 Oct 13 02:02 init_data.xml
[2025-10-13 02:05:00] -rw-------. 1 boincer umatlas 194656263 Oct 13 02:03 HITS.46676269._090119.pool.root.1
[2025-10-13 02:05:00] -rw-r--r--. 1 boincer umatlas       529 Oct 13 02:03 boinc_task_state.xml
[2025-10-13 02:05:00] -rw-------. 1 boincer umatlas      1033 Oct 13 02:03 memory_monitor_summary.json
[2025-10-13 02:05:00] -rw-------. 1 boincer umatlas    347497 Oct 13 02:03 log.46676269._090119.job.log.tgz.1
[2025-10-13 02:05:00] -rw-------. 1 boincer umatlas      7814 Oct 13 02:04 heartbeat.json
[2025-10-13 02:05:00] -rw-------. 1 boincer umatlas        95 Oct 13 02:04 pilot_heartbeat.json
[2025-10-13 02:05:00] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 02:04 boinc_mmap_file
[2025-10-13 02:05:00] -rw-r--r--. 1 boincer umatlas        27 Oct 13 02:04 wrapper_checkpoint.txt
[2025-10-13 02:05:00] -rw-------. 1 boincer umatlas      4895 Oct 13 02:05 pilotlog.txt
[2025-10-13 02:05:00] -rw-------. 1 boincer umatlas    753024 Oct 13 02:05 log.46676269._090119.job.log.1
[2025-10-13 02:05:00] -rw-------. 1 boincer umatlas       357 Oct 13 02:05 output.list
[2025-10-13 02:05:00] -rw-r--r--. 1 boincer umatlas       620 Oct 13 02:05 runtime_log
[2025-10-13 02:05:00] -rw-------. 1 boincer umatlas   1116160 Oct 13 02:05 result.tar.gz
[2025-10-13 02:05:00] -rw-r--r--. 1 boincer umatlas      8693 Oct 13 02:05 runtime_log.err
[2025-10-13 02:05:00] -rw-------. 1 boincer umatlas       648 Oct 13 02:05 DyVMDmbvIS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlilNDmQ5osQo.diag
[2025-10-13 02:05:00] -rw-r--r--. 1 boincer umatlas     21771 Oct 13 02:05 stderr.txt
[2025-10-13 02:05:00] HITS file was successfully produced:
[2025-10-13 02:05:00] -rw-------. 1 boincer umatlas 194656263 Oct 13 02:03 shared/HITS.pool.root.1
[2025-10-13 02:05:00]  *** Contents of shared directory: ***
[2025-10-13 02:05:00] total 406896
[2025-10-13 02:05:00] -rw-r--r--. 2 boincer umatlas 220289929 Oct 13 00:38 ATLAS.root_0
[2025-10-13 02:05:00] -rw-r--r--. 2 boincer umatlas    569678 Oct 13 00:38 input.tar.gz
[2025-10-13 02:05:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:38 start_atlas.sh
[2025-10-13 02:05:00] -rw-------. 1 boincer umatlas 194656263 Oct 13 02:03 HITS.pool.root.1
[2025-10-13 02:05:00] -rw-------. 1 boincer umatlas   1116160 Oct 13 02:05 result.tar.gz
02:05:02 (1414249): run_atlas exited; CPU time 37531.285862
02:05:02 (1414249): called boinc_finish(0)

</stderr_txt>
]]>

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