Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 10:40:54 (1421889): vboxwrapper version 26210
2025-10-13 10:40:54 (1421889): BOINC client version: 8.2.5
2025-10-13 10:40:54 (1421889): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-10-13 10:40:54 (1421889): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 10:40:54 (1421889): Create VM. (boinc_4b9b628f520f1cfb, slot#101)
2025-10-13 10:40:55 (1421889): Setting Memory Size for VM. (4096MB)
2025-10-13 10:40:55 (1421889): Setting CPU Count for VM. (1)
2025-10-13 10:40:55 (1421889): Setting Chipset Options for VM.
2025-10-13 10:40:55 (1421889): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 10:40:56 (1421889): Setting Boot Options for VM.
2025-10-13 10:40:56 (1421889): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 10:40:56 (1421889): Enabling VM Network Access.
2025-10-13 10:40:57 (1421889): Disabling USB Support for VM.
2025-10-13 10:40:57 (1421889): Disabling COM Port Support for VM.
2025-10-13 10:40:57 (1421889): Disabling LPT Port Support for VM.
2025-10-13 10:40:57 (1421889): Disabling Audio Support for VM.
2025-10-13 10:40:58 (1421889): Disabling Clipboard Support for VM.
2025-10-13 10:40:58 (1421889): Disabling Drag and Drop Support for VM.
2025-10-13 10:40:58 (1421889): Adding storage controller(s) to VM.
2025-10-13 10:40:58 (1421889): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 10:40:59 (1421889): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 10:40:59 (1421889): forwarding host port 46113 to guest port 80
2025-10-13 10:40:59 (1421889): Enabling remote desktop for VM.
2025-10-13 10:41:00 (1421889): Enabling shared directory for VM.
2025-10-13 10:41:00 (1421889): Starting VM using VBoxManage interface. (boinc_4b9b628f520f1cfb, slot#101)
2025-10-13 10:41:02 (1421889): Successfully started VM. (PID = '1422349')
2025-10-13 10:41:02 (1421889): Reporting VM Process ID to BOINC.
2025-10-13 10:41:02 (1421889): Guest Log: BIOS: VirtualBox 7.0.20
2025-10-13 10:41:02 (1421889): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 10:41:02 (1421889): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 10:41:02 (1421889): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 10:41:02 (1421889): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 10:41:02 (1421889): Detected: Web Application Enabled (http://localhost:46113)
2025-10-13 10:41:02 (1421889): Detected: Remote Desktop Enabled (localhost:44063)
2025-10-13 10:41:02 (1421889): Preference change detected
2025-10-13 10:41:02 (1421889): Setting CPU throttle for VM. (100%)
2025-10-13 10:41:02 (1421889): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 10:41:04 (1421889): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 10:41:04 (1421889): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 10:41:07 (1421889): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 10:41:07 (1421889): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 10:41:07 (1421889): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 10:41:11 (1421889): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 10:41:11 (1421889): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-13 10:41:20 (1421889): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 10:41:20 (1421889): Guest Log: 00:00:00.000148 main     Log opened 2025-10-13T08:41:18.349990000Z
2025-10-13 10:41:20 (1421889): Guest Log: 00:00:00.000247 main     OS Product: Linux
2025-10-13 10:41:20 (1421889): Guest Log: 00:00:00.000268 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 10:41:20 (1421889): Guest Log: 00:00:00.000290 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 10:41:20 (1421889): Guest Log: 00:00:00.000307 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 10:41:20 (1421889): Guest Log: 00:00:00.000307 main     Process ID: 1241
2025-10-13 10:41:20 (1421889): Guest Log: 00:00:00.000308 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 10:41:20 (1421889): Guest Log: 00:00:00.001788 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 10:41:20 (1421889): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 10:41:20 (1421889): Guest Log: [INFO] Mounting shared directory
2025-10-13 10:41:20 (1421889): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 10:42:12 (1421889): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 10:42:12 (1421889): Guest Log: [INFO] Detected branch: prod
2025-10-13 10:42:12 (1421889): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 10:42:12 (1421889): Guest Log: Copying input files
2025-10-13 10:42:13 (1421889): Guest Log: Copied input files into RunAtlas.
2025-10-13 10:42:13 (1421889): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-10-13 10:42:24 (1421889): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 10:42:24 (1421889): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 10:42:24 (1421889): Guest Log: 2.6.3.0 1533 0 31536 151654 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-10-13 10:42:25 (1421889): Guest Log: copied the webapp to /var/www
2025-10-13 10:42:25 (1421889): Guest Log: core_number=1
2025-10-13 10:42:25 (1421889): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 10:42:25 (1421889): Guest Log:  *** Starting ATLAS job. (PandaID=6831642056 taskID=46376905) ***
2025-10-13 12:20:02 (1421889): Status Report: Elapsed Time: '6000.000000'
2025-10-13 12:20:02 (1421889): Status Report: CPU Time: '5848.020000'
2025-10-13 13:59:03 (1421889): Status Report: Elapsed Time: '12000.000000'
2025-10-13 13:59:03 (1421889): Status Report: CPU Time: '11793.380000'
2025-10-13 15:38:03 (1421889): Status Report: Elapsed Time: '18000.000000'
2025-10-13 15:38:03 (1421889): Status Report: CPU Time: '17738.420000'
2025-10-13 17:17:03 (1421889): Status Report: Elapsed Time: '24000.000000'
2025-10-13 17:17:03 (1421889): Status Report: CPU Time: '23683.870000'
2025-10-13 18:56:04 (1421889): Status Report: Elapsed Time: '30000.000000'
2025-10-13 18:56:04 (1421889): Status Report: CPU Time: '29628.920000'
2025-10-13 20:23:31 (1421889): Guest Log:  *** Job finished ***
2025-10-13 20:23:31 (1421889): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:12,102 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:12,102 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:24,941 | INFO     | [monitor] cgroup control has ended
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:26,112 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140323176339264)>', '<ExcThread(monitor, started 140322730395392)>']
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:26,118 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:26,118 | INFO     | [monitor] control thread has ended
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:31,117 | INFO     | all workflow threads have been joined
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:31,118 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:31,118 | INFO     | traces error code: 0
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:31,118 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:31,201 [wrapper] ==== pilot stdout END ====
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:31,204 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:31,208 [wrapper] pilotpid: 5854
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:31,211 [wrapper] Pilot exit status: 0
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:31,395 [wrapper] pandaids: 6831642056
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:31,418 [wrapper] cleanup supervisor_pilot 15508 5855
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:31,422 [wrapper] Test setup, not cleaning
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:31,426 [wrapper] apfmon messages muted
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:31,430 [wrapper] ==== wrapper stdout END ====
2025-10-13 20:23:31 (1421889): Guest Log: 2025-10-13 18:23:31,434 [wrapper] ==== wrapper stderr END ====
2025-10-13 20:23:31 (1421889): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 20:23:31 (1421889): Guest Log:     "exeErrorCode": 0,
2025-10-13 20:23:31 (1421889): Guest Log:     "exeErrorDiag": "",
2025-10-13 20:23:31 (1421889): Guest Log:     "pilotErrorCode": 0,
2025-10-13 20:23:31 (1421889): Guest Log:     "pilotErrorDiag": "",
2025-10-13 20:23:31 (1421889): Guest Log:  *** Listing of results directory ***
2025-10-13 20:23:31 (1421889): Guest Log: total 194936
2025-10-13 20:23:31 (1421889): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  5 12:57 pilot3.tar.gz
2025-10-13 20:23:31 (1421889): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  5 13:40 queuedata.json
2025-10-13 20:23:31 (1421889): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  5 13:42 runpilot2-wrapper.sh
2025-10-13 20:23:31 (1421889): Guest Log: -rw-r--r--. 1 atlas atlas     15120 Oct 13 08:42 start_atlas.sh
2025-10-13 20:23:31 (1421889): Guest Log: -rw-r--r--. 1 atlas atlas      9394 Oct 13 08:42 init_data.xml
2025-10-13 20:23:31 (1421889): Guest Log: -rw-r--r--. 1 atlas atlas    565605 Oct 13 08:42 input.tar.gz
2025-10-13 20:23:31 (1421889): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 13 08:42 EVNT.46376901._003155.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 20:23:31 (1421889): Guest Log: -rw-r--r--. 1 atlas atlas      2519 Oct 13 08:42 pandaJob.out
2025-10-13 20:23:31 (1421889): Guest Log: -rw-------. 1 atlas atlas    972857 Oct 13 08:42 agis_schedconf.cvmfs.json
2025-10-13 20:23:31 (1421889): Guest Log: drwx------. 4 atlas atlas      4096 Oct 13 08:42 pilot3
2025-10-13 20:23:31 (1421889): Guest Log: -rw-------. 1 atlas atlas 185000611 Oct 13 18:22 HITS.46376905._085951.pool.root.1
2025-10-13 20:23:31 (1421889): Guest Log: -rw-------. 1 atlas atlas      1026 Oct 13 18:22 memory_monitor_summary.json
2025-10-13 20:23:31 (1421889): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 13 18:22 agis_ddmendpoints.agis.ALL.json
2025-10-13 20:23:31 (1421889): Guest Log: -rw-------. 1 atlas atlas    652004 Oct 13 18:22 log.46376905._085951.job.log.tgz.1
2025-10-13 20:23:31 (1421889): Guest Log: -rw-------. 1 atlas atlas      7825 Oct 13 18:22 heartbeat.json
2025-10-13 20:23:31 (1421889): Guest Log: -rw-------. 1 atlas atlas        95 Oct 13 18:23 pilot_heartbeat.json
2025-10-13 20:23:31 (1421889): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 13 18:23 pilotlog.txt
2025-10-13 20:23:31 (1421889): Guest Log: -rw-------. 1 atlas atlas   4742245 Oct 13 18:23 log.46376905._085951.job.log.1
2025-10-13 20:23:31 (1421889): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 18:23 output.list
2025-10-13 20:23:31 (1421889): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 18:23 runtime_log
2025-10-13 20:23:31 (1421889): Guest Log: -rw-------. 1 atlas atlas   5416960 Oct 13 18:23 result.tar.gz
2025-10-13 20:23:31 (1421889): Guest Log: -rw-------. 1 atlas atlas       657 Oct 13 18:23 XKtMDmmBeP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhWPNDmatlzXo.diag
2025-10-13 20:23:31 (1421889): Guest Log: -rw-r--r--. 1 atlas atlas      8516 Oct 13 18:23 runtime_log.err
2025-10-13 20:23:32 (1421889): Guest Log: Looking for outputfile HITS.46376905._085951.pool.root.1
2025-10-13 20:23:32 (1421889): Guest Log: HITS file was successfully produced
2025-10-13 20:23:32 (1421889): Guest Log: -rw-------. 1 atlas atlas 185000611 Oct 13 18:22 /home/atlas/RunAtlas/HITS.46376905._085951.pool.root.1
2025-10-13 20:23:32 (1421889): Guest Log: Successfully finished the ATLAS job!
2025-10-13 20:23:32 (1421889): Guest Log: Copying the results back to the shared directory!
2025-10-13 20:23:32 (1421889): Guest Log:  *** Contents of shared directory: ***
2025-10-13 20:23:32 (1421889): Guest Log: total 215104
2025-10-13 20:23:32 (1421889): Guest Log: -rw-r--r--. 1 root root 214243656 Oct 13 08:40 ATLAS.root_0
2025-10-13 20:23:32 (1421889): Guest Log: -rw-r--r--. 1 root root      9394 Oct 13 08:40 init_data.xml
2025-10-13 20:23:32 (1421889): Guest Log: -rw-r--r--. 1 root root    565605 Oct 13 08:40 input.tar.gz
2025-10-13 20:23:32 (1421889): Guest Log: -rw-r--r--. 1 root root   5416960 Oct 13 18:23 result.tar.gz
2025-10-13 20:23:32 (1421889): Guest Log: -rw-r--r--. 1 root root     15120 Oct 13 08:40 start_atlas.sh
2025-10-13 20:23:32 (1421889): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 20:23:32 (1421889): VM Completion File Detected.
2025-10-13 20:23:32 (1421889): Powering off VM.
2025-10-13 20:23:33 (1421889): Successfully stopped VM.
2025-10-13 20:23:33 (1421889): Deregistering VM. (boinc_4b9b628f520f1cfb, slot#101)
2025-10-13 20:23:33 (1421889): Removing network bandwidth throttle group from VM.
2025-10-13 20:23:33 (1421889): Removing VM from VirtualBox.
2025-10-13 20:23:38 (1421889): called boinc_finish(0)

</stderr_txt>
]]>

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