Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:34:34 (2684502): wrapper (7.7.26015): starting
20:34:34 (2684502): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 20:34:34] Arguments: --nthreads 6
[2025-10-13 20:34:34] Threads: 6
[2025-10-13 20:34:34] Checking for CVMFS
[2025-10-13 20:34:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 20:34:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 20:34:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 20:34:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 20:34:35] 2.11.5.0 3102357 5208 93216 151660 2 187 42917873 52428800 858 130560 0 11789531 99.997 185907 15 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-13 20:34:35] CVMFS is ok
[2025-10-13 20:34:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 20:34:35] Checking for apptainer binary...
[2025-10-13 20:34:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 20:34:35] Running /usr/bin/apptainer --version
[2025-10-13 20:34:35] apptainer version 1.3.6-1.el9
[2025-10-13 20:34:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 20:34:35] testio002
[2025-10-13 20:34:35] apptainer works
[2025-10-13 20:34:35] Set ATHENA_PROC_NUMBER=6
[2025-10-13 20:34:35] Set ATHENA_CORE_NUMBER=6
[2025-10-13 20:34:35] Starting ATLAS job with PandaID=6840969758
[2025-10-13 20:34:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 21:52:16]  *** The last 200 lines of the pilot log: ***
[2025-10-13 21:52:16]  mtime=0
[2025-10-13 21:52:16]  protocol_id=None
[2025-10-13 21:52:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 21:52:16]  replicas=None
[2025-10-13 21:52:16]  scope=mc23_13p6TeV
[2025-10-13 21:52:16]  status=None
[2025-10-13 21:52:16]  status_code=0
[2025-10-13 21:52:16]  storage_token=
[2025-10-13 21:52:16]  surl=/var/lib/boinc/slots/2/PanDA_Pilot-6840969758/log.46676269._092442.job.log.tgz.1
[2025-10-13 21:52:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d1/52/log.46676269._092442.job.log.tgz.1
[2025-10-13 21:52:16]  workdir=None
[2025-10-13 21:52:16] ]
[2025-10-13 21:52:16] 2025-10-13 12:51:40,604 | INFO     | transferring file log.46676269._092442.job.log.tgz.1 from /var/lib/boinc/slots/2/PanDA_Pilot-6840969758/log.46676269._092442.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-13 21:52:16] 2025-10-13 12:51:40,604 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/2/PanDA_Pilot-6840969758/log.46676269._092442.job.log.tgz.1 /var/lib/boinc/slots/2/log.46676269._092442.job
[2025-10-13 21:52:16] 2025-10-13 12:51:40,612 | INFO     | adding to output.list: log.46676269._092442.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d1/52/log.46676269._092442.job.log.tg
[2025-10-13 21:52:16] 2025-10-13 12:51:40,613 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 21:52:16] 2025-10-13 12:51:40,613 | INFO     | summary of transferred files:
[2025-10-13 21:52:16] 2025-10-13 12:51:40,613 | INFO     |  -- lfn=log.46676269._092442.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 21:52:16] 2025-10-13 12:51:40,613 | INFO     | stage-out finished correctly
[2025-10-13 21:52:16] 2025-10-13 12:51:40,896 | INFO     | time since job start (4615s) is within the limit (172800.0s)
[2025-10-13 21:52:16] 2025-10-13 12:51:41,044 | INFO     | monitor loop #346: job 0:6840969758 is in state 'finished'
[2025-10-13 21:52:16] 2025-10-13 12:51:41,044 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 21:52:16] 2025-10-13 12:51:41,970 | INFO     | PID=2688306 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 21:52:16] 2025-10-13 12:51:42,166 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 21:52:16] 2025-10-13 12:51:42,233 | INFO     | job 6840969758 has state=finished
[2025-10-13 21:52:16] 2025-10-13 12:51:42,233 | INFO     | preparing for final server update for job 6840969758 in state='finished'
[2025-10-13 21:52:16] 2025-10-13 12:51:42,234 | INFO     | this job has now completed (state=finished)
[2025-10-13 21:52:16] 2025-10-13 12:51:42,234 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 21:52:16] 2025-10-13 12:51:42,234 | INFO     | log transfer has been attempted: DONE
[2025-10-13 21:52:16] 2025-10-13 12:51:42,234 | INFO     | job 6840969758 has finished - writing final server update
[2025-10-13 21:52:16] 2025-10-13 12:51:42,234 | INFO     | total number of processed events: 400 (read)
[2025-10-13 21:52:16] 2025-10-13 12:51:42,235 | INFO     | executing command: lscpu
[2025-10-13 21:52:16] 2025-10-13 12:51:42,250 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 21:52:16] 2025-10-13 12:51:42,970 | INFO     | time since job start (4617s) is within the limit (172800.0s)
[2025-10-13 21:52:16] 2025-10-13 12:51:43,547 | INFO     | monitor loop #347: job 0:6840969758 is in state 'finished'
[2025-10-13 21:52:16] 2025-10-13 12:51:43,547 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 21:52:16] 2025-10-13 12:51:44,672 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 21:52:16] 2025-10-13 12:51:44,674 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4248.065375
[2025-10-13 21:52:16] 2025-10-13 12:51:44,676 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6840969758/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 21:52:16] 2025-10-13 12:51:44,677 | INFO     | extracted standard info from prmon json
[2025-10-13 21:52:16] 2025-10-13 12:51:44,677 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 21:52:16] 2025-10-13 12:51:44,677 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 21:52:16] 2025-10-13 12:51:44,677 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 21:52:16] 2025-10-13 12:51:44,677 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 21:52:16] 2025-10-13 12:51:44,678 | INFO     | fitting pss+swap vs Time
[2025-10-13 21:52:16] 2025-10-13 12:51:44,679 | INFO     | sum of square deviations: 101843770.0
[2025-10-13 21:52:16] 2025-10-13 12:51:44,679 | INFO     | sum of deviations: -4741975238.999999
[2025-10-13 21:52:16] 2025-10-13 12:51:44,679 | INFO     | mean x: 1760357680.0
[2025-10-13 21:52:16] 2025-10-13 12:51:44,679 | INFO     | mean y: 2529507.115942029
[2025-10-13 21:52:16] 2025-10-13 12:51:44,679 | INFO     | -- intersect: 81967018158.14961
[2025-10-13 21:52:16] 2025-10-13 12:51:44,679 | INFO     | intersect: 81967018158.14961
[2025-10-13 21:52:16] 2025-10-13 12:51:44,679 | INFO     | chi2: 0.04637831573115339
[2025-10-13 21:52:16] 2025-10-13 12:51:44,679 | INFO     | -- intersect: 81967018158.14961
[2025-10-13 21:52:16] 2025-10-13 12:51:44,679 | INFO     | current memory leak: -46.56 B/s (using 69 data points, chi2=0.05)
[2025-10-13 21:52:16] 2025-10-13 12:51:44,680 | INFO     | could have reported an average CPU frequency of 4239 MHz (6 samples)
[2025-10-13 21:52:16] 2025-10-13 12:51:44,680 | INFO     | ..............................
[2025-10-13 21:52:16] 2025-10-13 12:51:44,680 | INFO     | . Timing measurements:
[2025-10-13 21:52:16] 2025-10-13 12:51:44,680 | INFO     | . get job = 0 s
[2025-10-13 21:52:16] 2025-10-13 12:51:44,680 | INFO     | . initial setup = 7 s
[2025-10-13 21:52:16] 2025-10-13 12:51:44,680 | INFO     | . payload setup = 1 s
[2025-10-13 21:52:16] 2025-10-13 12:51:44,680 | INFO     | . stage-in = 0 s
[2025-10-13 21:52:16] 2025-10-13 12:51:44,680 | INFO     | . payload execution = 4595 s
[2025-10-13 21:52:16] 2025-10-13 12:51:44,680 | INFO     | . stage-out = 0 s
[2025-10-13 21:52:16] 2025-10-13 12:51:44,680 | INFO     | . log creation = 0 s
[2025-10-13 21:52:16] 2025-10-13 12:51:44,680 | INFO     | ..............................
[2025-10-13 21:52:16] 2025-10-13 12:51:44,747 | INFO     | 
[2025-10-13 21:52:16] 2025-10-13 12:51:44,747 | INFO     | job summary report
[2025-10-13 21:52:16] 2025-10-13 12:51:44,747 | INFO     | --------------------------------------------------
[2025-10-13 21:52:16] 2025-10-13 12:51:44,747 | INFO     | PanDA job id: 6840969758
[2025-10-13 21:52:16] 2025-10-13 12:51:44,747 | INFO     | task id: 46676269
[2025-10-13 21:52:16] 2025-10-13 12:51:44,747 | INFO     | errors: (none)
[2025-10-13 21:52:16] 2025-10-13 12:51:44,747 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 21:52:16] 2025-10-13 12:51:44,747 | INFO     | pilot state: finished 
[2025-10-13 21:52:16] 2025-10-13 12:51:44,747 | INFO     | transexitcode: 0
[2025-10-13 21:52:16] 2025-10-13 12:51:44,748 | INFO     | exeerrorcode: 0
[2025-10-13 21:52:16] 2025-10-13 12:51:44,748 | INFO     | exeerrordiag: 
[2025-10-13 21:52:16] 2025-10-13 12:51:44,748 | INFO     | exitcode: 0
[2025-10-13 21:52:16] 2025-10-13 12:51:44,748 | INFO     | exitmsg: OK
[2025-10-13 21:52:16] 2025-10-13 12:51:44,748 | INFO     | cpuconsumptiontime: 25134 s
[2025-10-13 21:52:16] 2025-10-13 12:51:44,748 | INFO     | nevents: 400
[2025-10-13 21:52:16] 2025-10-13 12:51:44,748 | INFO     | neventsw: 0
[2025-10-13 21:52:16] 2025-10-13 12:51:44,748 | INFO     | pid: 2695110
[2025-10-13 21:52:16] 2025-10-13 12:51:44,748 | INFO     | pgrp: 2695110
[2025-10-13 21:52:16] 2025-10-13 12:51:44,748 | INFO     | corecount: 6
[2025-10-13 21:52:16] 2025-10-13 12:51:44,748 | INFO     | event service: False
[2025-10-13 21:52:16] 2025-10-13 12:51:44,748 | INFO     | sizes: {0: 2348857, 2: 2349119, 11: 2349147, 4601: 2375360, 4602: 2375359, 4603: 2384413, 4605: 2384597, 4607: 2384791}
[2025-10-13 21:52:16] 2025-10-13 12:51:44,748 | INFO     | --------------------------------------------------
[2025-10-13 21:52:16] 2025-10-13 12:51:44,748 | INFO     | 
[2025-10-13 21:52:16] 2025-10-13 12:51:44,748 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-10-13 21:52:16] 2025-10-13 12:51:44,761 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 21:52:16] 2025-10-13 12:51:44,761 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 21:52:16] 2025-10-13 12:51:44,761 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 21:52:16] 2025-10-13 12:51:44,761 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 21:52:16] 2025-10-13 12:51:44,761 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 21:52:16] 2025-10-13 12:51:44,761 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 21:52:16] 2025-10-13 12:51:44,761 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 21:52:16] 2025-10-13 12:51:44,761 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 21:52:16] 2025-10-13 12:51:44,761 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 21:52:16] 2025-10-13 12:51:44,761 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 21:52:16] 2025-10-13 12:51:44,761 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 21:52:16] 2025-10-13 12:51:44,761 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 21:52:16] 2025-10-13 12:51:44,762 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 21:52:16] 2025-10-13 12:51:44,762 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 21:52:16] 2025-10-13 12:51:44,762 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 21:52:16] 2025-10-13 12:51:44,762 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 21:52:16] 2025-10-13 12:51:44,762 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 21:52:16] 2025-10-13 12:51:44,762 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 21:52:16] 2025-10-13 12:51:44,762 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 21:52:16] 2025-10-13 12:51:44,762 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 21:52:16] 2025-10-13 12:51:44,762 | INFO     | job 6840969758 has completed (purged errors)
[2025-10-13 21:52:16] 2025-10-13 12:51:44,762 | INFO     | overall cleanup function is called
[2025-10-13 21:52:16] 2025-10-13 12:51:45,768 | INFO     | --- collectZombieJob: --- 10, [2695110]
[2025-10-13 21:52:16] 2025-10-13 12:51:45,768 | INFO     | zombie collector waiting for pid 2695110
[2025-10-13 21:52:16] 2025-10-13 12:51:45,768 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 21:52:16] 2025-10-13 12:51:45,768 | INFO     | collected zombie processes
[2025-10-13 21:52:16] 2025-10-13 12:51:45,768 | INFO     | will attempt to kill all subprocesses of pid=2695110
[2025-10-13 21:52:16] 2025-10-13 12:51:45,826 | INFO     | process IDs to be killed: [2695110] (in reverse order)
[2025-10-13 21:52:16] 2025-10-13 12:51:45,851 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 21:52:16] 2025-10-13 12:51:45,852 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 21:52:16] 2025-10-13 12:51:45,854 | INFO     | did not find any defunct processes belonging to 2695110
[2025-10-13 21:52:16] 2025-10-13 12:51:45,856 | INFO     | did not find any defunct processes belonging to 2695110
[2025-10-13 21:52:16] 2025-10-13 12:51:45,856 | INFO     | ready for new job
[2025-10-13 21:52:16] 2025-10-13 12:51:45,857 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 21:52:16] 2025-10-13 12:51:45,857 | INFO     | ***************************************
[2025-10-13 21:52:16] 2025-10-13 12:51:45,857 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 21:52:16] 2025-10-13 12:51:45,858 | INFO     | ***************************************
[2025-10-13 21:52:16] 2025-10-13 12:51:45,858 | INFO     | 
[2025-10-13 21:52:16] 2025-10-13 12:51:45,858 | INFO     | architecture information:
[2025-10-13 21:52:16] 2025-10-13 12:51:45,858 | INFO     | executing command: cat /etc/os-release
[2025-10-13 21:52:16] 2025-10-13 12:51:45,867 | INFO     | cat /etc/os-release:
[2025-10-13 21:52:16] NAME="CentOS Linux"
[2025-10-13 21:52:16] VERSION="7 (Core)"
[2025-10-13 21:52:16] ID="centos"
[2025-10-13 21:52:16] ID_LIKE="rhel fedora"
[2025-10-13 21:52:16] VERSION_ID="7"
[2025-10-13 21:52:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 21:52:16] ANSI_COLOR="0;31"
[2025-10-13 21:52:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 21:52:16] HOME_URL="https://www.centos.org/"
[2025-10-13 21:52:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 21:52:16] 
[2025-10-13 21:52:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 21:52:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 21:52:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 21:52:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 21:52:16] 
[2025-10-13 21:52:16] 2025-10-13 12:51:45,868 | INFO     | ***************************************
[2025-10-13 21:52:16] 2025-10-13 12:51:46,370 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-10-13 21:52:16] 2025-10-13 12:51:46,380 | INFO     | sufficient remaining disk space (301947944960 B)
[2025-10-13 21:52:16] 2025-10-13 12:51:46,380 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 21:52:16] 2025-10-13 12:51:46,380 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 21:52:16] 2025-10-13 12:51:46,380 | INFO     | update_server=False
[2025-10-13 21:52:16] 2025-10-13 12:51:46,380 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 21:52:16] 2025-10-13 12:51:46,380 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:52:16] 2025-10-13 12:51:46,380 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 21:52:16] 2025-10-13 12:51:46,625 | INFO     | all data control threads have been joined
[2025-10-13 21:52:16] 2025-10-13 12:51:46,868 | INFO     | all job control threads have been joined
[2025-10-13 21:52:16] 2025-10-13 12:51:47,055 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:52:16] 2025-10-13 12:51:47,055 | INFO     | aborting loop
[2025-10-13 21:52:16] 2025-10-13 12:51:47,157 | INFO     | all payload control threads have been joined
[2025-10-13 21:52:16] 2025-10-13 12:51:47,385 | INFO     | [job] queue monitor thread has finished
[2025-10-13 21:52:16] 2025-10-13 12:51:47,385 | INFO     | [job] retrieve thread has finished
[2025-10-13 21:52:16] 2025-10-13 12:51:47,630 | INFO     | [data] control thread has finished
[2025-10-13 21:52:16] 2025-10-13 12:51:47,873 | INFO     | [job] control thread has finished
[2025-10-13 21:52:16] 2025-10-13 12:51:47,901 | INFO     | [payload] validate_post thread has finished
[2025-10-13 21:52:16] 2025-10-13 12:51:48,060 | INFO     | [job] job monitor thread has finished
[2025-10-13 21:52:16] 2025-10-13 12:51:48,162 | INFO     | [payload] control thread has finished
[2025-10-13 21:52:16] 2025-10-13 12:51:48,244 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 21:52:16] 2025-10-13 12:51:48,264 | INFO     | [job] validate thread has finished
[2025-10-13 21:52:16] 2025-10-13 12:51:48,339 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 21:52:16] 2025-10-13 12:51:48,385 | INFO     | [data] copytool_out thread has finished
[2025-10-13 21:52:16] 2025-10-13 12:51:48,398 | INFO     | [data] copytool_in thread has finished
[2025-10-13 21:52:16] 2025-10-13 12:51:48,400 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 21:52:16] 2025-10-13 12:51:48,440 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 21:52:16] 2025-10-13 12:51:48,928 | INFO     | [payload] failed_post thread has finished
[2025-10-13 21:52:16] 2025-10-13 12:51:52,249 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 21:52:16] 2025-10-13 12:51:52,334 | INFO     | [monitor] cgroup control has ended
[2025-10-13 21:52:16] 2025-10-13 12:51:57,273 | INFO     | job.realtimelogging is not enabled
[2025-10-13 21:52:16] 2025-10-13 12:51:58,278 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 21:52:16] 2025-10-13 12:52:00,321 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140086215411520)>', '<ExcThread(monitor, started 140085943047936)>']
[2025-10-13 21:52:16] 2025-10-13 12:52:05,346 | INFO     | all workflow threads have been joined
[2025-10-13 21:52:16] 2025-10-13 12:52:05,346 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 21:52:16] 2025-10-13 12:52:05,346 | INFO     | traces error code: 0
[2025-10-13 21:52:16] 2025-10-13 12:52:05,346 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 21:52:16] 2025-10-13 12:52:16,101 | INFO     | PID=2688306 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 21:52:16] 2025-10-13 12:52:16,102 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 21:52:16] 2025-10-13 12:52:16,102 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 21:52:16] 2025-10-13 12:52:16,102 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 21:52:16] 2025-10-13 12:52:16,102 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 21:52:16] 2025-10-13 12:52:16,102 | INFO     | [monitor] control thread has ended
[2025-10-13 21:52:16] 2025-10-13 12:52:16,195 [wrapper] ==== pilot stdout END ====
[2025-10-13 21:52:16] 2025-10-13 12:52:16,197 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 21:52:16] 2025-10-13 12:52:16,198 [wrapper] pilotpid: 2688306
[2025-10-13 21:52:16] 2025-10-13 12:52:16,202 [wrapper] Pilot exit status: 0
[2025-10-13 21:52:16] 2025-10-13 12:52:16,206 [wrapper] pandaids: 6840969758
[2025-10-13 21:52:16] 2025-10-13 12:52:16,220 [wrapper] cleanup supervisor_pilot 2714099 2688307
[2025-10-13 21:52:16] 2025-10-13 12:52:16,222 [wrapper] Test setup, not cleaning
[2025-10-13 21:52:16] 2025-10-13 12:52:16,223 [wrapper] apfmon messages muted
[2025-10-13 21:52:16] 2025-10-13 12:52:16,224 [wrapper] ==== wrapper stdout END ====
[2025-10-13 21:52:16] 2025-10-13 12:52:16,226 [wrapper] ==== wrapper stderr END ====
[2025-10-13 21:52:16]  *** Error codes and diagnostics ***
[2025-10-13 21:52:16]     "exeErrorCode": 0,
[2025-10-13 21:52:16]     "exeErrorDiag": "",
[2025-10-13 21:52:16]     "pilotErrorCode": 0,
[2025-10-13 21:52:16]     "pilotErrorDiag": "",
[2025-10-13 21:52:16]  *** Listing of results directory ***
[2025-10-13 21:52:16] total 422452
[2025-10-13 21:52:16] -rw-r--r--. 1 boinc boinc    557409 Oct 13 08:11 pilot3.tar.gz
[2025-10-13 21:52:16] -rwx------. 1 boinc boinc     36292 Oct 13 08:45 runpilot2-wrapper.sh
[2025-10-13 21:52:16] -rw-r--r--. 1 boinc boinc      5112 Oct 13 08:45 queuedata.json
[2025-10-13 21:52:16] -rw-r--r--. 1 boinc boinc       100 Oct 13 20:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 21:52:16] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 20:34 run_atlas
[2025-10-13 21:52:16] -rw-r--r--. 1 boinc boinc       105 Oct 13 20:34 job.xml
[2025-10-13 21:52:16] -rw-r--r--. 2 boinc boinc 219891211 Oct 13 20:34 EVNT.46676267._004666.pool.root.1
[2025-10-13 21:52:16] -rw-r--r--. 2 boinc boinc     15120 Oct 13 20:34 start_atlas.sh
[2025-10-13 21:52:16] drwxrwx--x. 2 boinc boinc        68 Oct 13 20:34 shared
[2025-10-13 21:52:16] -rw-r--r--. 2 boinc boinc    569677 Oct 13 20:34 input.tar.gz
[2025-10-13 21:52:16] -rw-r--r--. 1 boinc boinc      9628 Oct 13 20:34 init_data.xml
[2025-10-13 21:52:16] -rw-r--r--. 1 boinc boinc         0 Oct 13 20:34 boinc_lockfile
[2025-10-13 21:52:16] -rw-r--r--. 1 boinc boinc      2550 Oct 13 20:34 pandaJob.out
[2025-10-13 21:52:16] -rw-------. 1 boinc boinc    972497 Oct 13 20:34 agis_schedconf.cvmfs.json
[2025-10-13 21:52:16] -rw-------. 1 boinc boinc   1560580 Oct 13 20:34 agis_ddmendpoints.agis.ALL.json
[2025-10-13 21:52:16] drwx------. 5 boinc boinc      4096 Oct 13 20:34 pilot3
[2025-10-13 21:52:16] -rw-------. 1 boinc boinc 206819559 Oct 13 21:51 HITS.46676269._092442.pool.root.1
[2025-10-13 21:52:16] -rw-r--r--. 1 boinc boinc       529 Oct 13 21:51 boinc_task_state.xml
[2025-10-13 21:52:16] -rw-------. 1 boinc boinc      1025 Oct 13 21:51 memory_monitor_summary.json
[2025-10-13 21:52:16] -rw-------. 1 boinc boinc    308901 Oct 13 21:51 log.46676269._092442.job.log.tgz.1
[2025-10-13 21:52:16] -rw-------. 1 boinc boinc      7793 Oct 13 21:51 heartbeat.json
[2025-10-13 21:52:16] -rw-r--r--. 1 boinc boinc        27 Oct 13 21:52 wrapper_checkpoint.txt
[2025-10-13 21:52:16] -rw-r--r--. 1 boinc boinc      8192 Oct 13 21:52 boinc_mmap_file
[2025-10-13 21:52:16] -rw-------. 1 boinc boinc       747 Oct 13 21:52 pilotlog.txt
[2025-10-13 21:52:16] -rw-------. 1 boinc boinc        95 Oct 13 21:52 pilot_heartbeat.json
[2025-10-13 21:52:16] -rw-------. 1 boinc boinc    686511 Oct 13 21:52 log.46676269._092442.job.log.1
[2025-10-13 21:52:16] -rw-------. 1 boinc boinc       357 Oct 13 21:52 output.list
[2025-10-13 21:52:16] -rw-r--r--. 1 boinc boinc       620 Oct 13 21:52 runtime_log
[2025-10-13 21:52:16] -rw-------. 1 boinc boinc   1013760 Oct 13 21:52 result.tar.gz
[2025-10-13 21:52:16] -rw-------. 1 boinc boinc       641 Oct 13 21:52 xmwNDmqvKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmI5lNDmiPDgWn.diag
[2025-10-13 21:52:16] -rw-r--r--. 1 boinc boinc      8661 Oct 13 21:52 runtime_log.err
[2025-10-13 21:52:16] -rw-r--r--. 1 boinc boinc     21483 Oct 13 21:52 stderr.txt
[2025-10-13 21:52:16] HITS file was successfully produced:
[2025-10-13 21:52:16] -rw-------. 1 boinc boinc 206819559 Oct 13 21:51 shared/HITS.pool.root.1
[2025-10-13 21:52:16]  *** Contents of shared directory: ***
[2025-10-13 21:52:16] total 418284
[2025-10-13 21:52:16] -rw-r--r--. 2 boinc boinc 219891211 Oct 13 20:34 ATLAS.root_0
[2025-10-13 21:52:16] -rw-r--r--. 2 boinc boinc     15120 Oct 13 20:34 start_atlas.sh
[2025-10-13 21:52:16] -rw-r--r--. 2 boinc boinc    569677 Oct 13 20:34 input.tar.gz
[2025-10-13 21:52:16] -rw-------. 1 boinc boinc 206819559 Oct 13 21:51 HITS.pool.root.1
[2025-10-13 21:52:16] -rw-------. 1 boinc boinc   1013760 Oct 13 21:52 result.tar.gz
21:52:17 (2684502): run_atlas exited; CPU time 25158.481066
21:52:17 (2684502): called boinc_finish(0)

</stderr_txt>
]]>

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