Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:43:07 (29784): wrapper (7.7.26015): starting
20:43:07 (29784): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 20:43:07] Arguments: --nthreads 6
[2025-10-13 20:43:07] Threads: 6
[2025-10-13 20:43:07] Checking for CVMFS
[2025-10-13 20:43:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 20:43:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 20:43:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 20:43:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 20:43:08] 2.12.7.0 249871 7265 95076 151660 0 57 14056314 20971520 929 130560 0 12359805 99.995 251467 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-13 20:43:08] CVMFS is ok
[2025-10-13 20:43:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 20:43:08] Checking for apptainer binary...
[2025-10-13 20:43:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 20:43:08] Running /usr/bin/apptainer --version
[2025-10-13 20:43:08] apptainer version 1.4.0-1.el9
[2025-10-13 20:43:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 20:43:08] testio005
[2025-10-13 20:43:08] apptainer works
[2025-10-13 20:43:08] Set ATHENA_PROC_NUMBER=6
[2025-10-13 20:43:08] Set ATHENA_CORE_NUMBER=6
[2025-10-13 20:43:08] Starting ATLAS job with PandaID=6840970366
[2025-10-13 20:43:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 22:16:36]  *** The last 200 lines of the pilot log: ***
[2025-10-13 22:16:36] 2025-10-13 13:15:12,015 | INFO     | time since job start (5510s) is within the limit (172800.0s)
[2025-10-13 22:16:36] 2025-10-13 13:15:12,989 | INFO     | monitor loop #423: job 0:6840970366 is in state 'finished'
[2025-10-13 22:16:36] 2025-10-13 13:15:12,989 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:16:36] 2025-10-13 13:15:14,021 | INFO     | time since job start (5512s) is within the limit (172800.0s)
[2025-10-13 22:16:36] 2025-10-13 13:15:15,492 | INFO     | monitor loop #424: job 0:6840970366 is in state 'finished'
[2025-10-13 22:16:36] 2025-10-13 13:15:15,492 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:16:36] 2025-10-13 13:15:16,026 | INFO     | time since job start (5514s) is within the limit (172800.0s)
[2025-10-13 22:16:36] 2025-10-13 13:15:17,995 | INFO     | monitor loop #425: job 0:6840970366 is in state 'finished'
[2025-10-13 22:16:36] 2025-10-13 13:15:17,995 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:16:36] 2025-10-13 13:15:18,032 | INFO     | time since job start (5516s) is within the limit (172800.0s)
[2025-10-13 22:16:36] 2025-10-13 13:15:20,037 | INFO     | time since job start (5518s) is within the limit (172800.0s)
[2025-10-13 22:16:36] 2025-10-13 13:15:20,498 | INFO     | monitor loop #426: job 0:6840970366 is in state 'finished'
[2025-10-13 22:16:36] 2025-10-13 13:15:20,498 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:16:36] 2025-10-13 13:15:22,042 | INFO     | time since job start (5520s) is within the limit (172800.0s)
[2025-10-13 22:16:36] 2025-10-13 13:15:23,001 | INFO     | monitor loop #427: job 0:6840970366 is in state 'finished'
[2025-10-13 22:16:36] 2025-10-13 13:15:23,001 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:16:36] 2025-10-13 13:15:24,048 | INFO     | time since job start (5522s) is within the limit (172800.0s)
[2025-10-13 22:16:36] 2025-10-13 13:15:25,504 | INFO     | monitor loop #428: job 0:6840970366 is in state 'finished'
[2025-10-13 22:16:36] 2025-10-13 13:15:25,505 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:16:36] 2025-10-13 13:15:26,054 | INFO     | time since job start (5524s) is within the limit (172800.0s)
[2025-10-13 22:16:36] 2025-10-13 13:15:28,008 | INFO     | monitor loop #429: job 0:6840970366 is in state 'finished'
[2025-10-13 22:16:36] 2025-10-13 13:15:28,008 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:16:36] 2025-10-13 13:15:30,511 | INFO     | monitor loop #430: job 0:6840970366 is in state 'finished'
[2025-10-13 22:16:36] 2025-10-13 13:15:30,511 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:16:36] 2025-10-13 13:15:33,014 | INFO     | monitor loop #431: job 0:6840970366 is in state 'finished'
[2025-10-13 22:16:36] 2025-10-13 13:15:33,014 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:16:36] 2025-10-13 13:15:35,517 | INFO     | monitor loop #432: job 0:6840970366 is in state 'finished'
[2025-10-13 22:16:36] 2025-10-13 13:15:35,517 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:16:36] 2025-10-13 13:15:35,527 | INFO     | PID=33566 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 22:16:36] 2025-10-13 13:15:35,527 | INFO     | .. there are 2 such processes running
[2025-10-13 22:16:36] 2025-10-13 13:15:36,528 | INFO     | time since job start (5534s) is within the limit (172800.0s)
[2025-10-13 22:16:36] 2025-10-13 13:15:38,019 | INFO     | monitor loop #433: job 0:6840970366 is in state 'finished'
[2025-10-13 22:16:36] 2025-10-13 13:15:38,020 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:16:36] 2025-10-13 13:15:38,399 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 22:16:36] 2025-10-13 13:15:38,402 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3312.4788750000007
[2025-10-13 22:16:36] 2025-10-13 13:15:38,405 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6840970366/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 22:16:36] 2025-10-13 13:15:38,406 | INFO     | extracted standard info from prmon json
[2025-10-13 22:16:36] 2025-10-13 13:15:38,406 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 22:16:36] 2025-10-13 13:15:38,406 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 22:16:36] 2025-10-13 13:15:38,406 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 22:16:36] 2025-10-13 13:15:38,406 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 22:16:36] 2025-10-13 13:15:38,408 | INFO     | fitting pss+swap vs Time
[2025-10-13 22:16:36] 2025-10-13 13:15:38,408 | INFO     | sum of square deviations: 177275882.0
[2025-10-13 22:16:36] 2025-10-13 13:15:38,409 | INFO     | sum of deviations: -11959264537.0
[2025-10-13 22:16:36] 2025-10-13 13:15:38,409 | INFO     | mean x: 1760358631.0
[2025-10-13 22:16:36] 2025-10-13 13:15:38,409 | INFO     | mean y: 2541302.108433735
[2025-10-13 22:16:36] 2025-10-13 13:15:38,409 | INFO     | -- intersect: 118758653586.57681
[2025-10-13 22:16:36] 2025-10-13 13:15:38,409 | INFO     | intersect: 118758653586.57681
[2025-10-13 22:16:36] 2025-10-13 13:15:38,409 | INFO     | chi2: 0.10853458346369638
[2025-10-13 22:16:36] 2025-10-13 13:15:38,410 | INFO     | -- intersect: 118758653586.57681
[2025-10-13 22:16:36] 2025-10-13 13:15:38,410 | INFO     | current memory leak: -67.46 B/s (using 83 data points, chi2=0.11)
[2025-10-13 22:16:36] 2025-10-13 13:15:38,410 | INFO     | could have reported an average CPU frequency of 3320 MHz (6 samples)
[2025-10-13 22:16:36] 2025-10-13 13:15:38,410 | INFO     | ..............................
[2025-10-13 22:16:36] 2025-10-13 13:15:38,410 | INFO     | . Timing measurements:
[2025-10-13 22:16:36] 2025-10-13 13:15:38,410 | INFO     | . get job = 0 s
[2025-10-13 22:16:36] 2025-10-13 13:15:38,410 | INFO     | . initial setup = 8 s
[2025-10-13 22:16:36] 2025-10-13 13:15:38,410 | INFO     | . payload setup = 4 s
[2025-10-13 22:16:36] 2025-10-13 13:15:38,411 | INFO     | . stage-in = 0 s
[2025-10-13 22:16:36] 2025-10-13 13:15:38,411 | INFO     | . payload execution = 5435 s
[2025-10-13 22:16:36] 2025-10-13 13:15:38,411 | INFO     | . stage-out = 0 s
[2025-10-13 22:16:36] 2025-10-13 13:15:38,411 | INFO     | . log creation = 0 s
[2025-10-13 22:16:36] 2025-10-13 13:15:38,411 | INFO     | ..............................
[2025-10-13 22:16:36] 2025-10-13 13:15:38,479 | INFO     | 
[2025-10-13 22:16:36] 2025-10-13 13:15:38,480 | INFO     | job summary report
[2025-10-13 22:16:36] 2025-10-13 13:15:38,480 | INFO     | --------------------------------------------------
[2025-10-13 22:16:36] 2025-10-13 13:15:38,480 | INFO     | PanDA job id: 6840970366
[2025-10-13 22:16:36] 2025-10-13 13:15:38,480 | INFO     | task id: 46676269
[2025-10-13 22:16:36] 2025-10-13 13:15:38,480 | INFO     | errors: (none)
[2025-10-13 22:16:36] 2025-10-13 13:15:38,480 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 22:16:36] 2025-10-13 13:15:38,480 | INFO     | pilot state: finished 
[2025-10-13 22:16:36] 2025-10-13 13:15:38,480 | INFO     | transexitcode: 0
[2025-10-13 22:16:36] 2025-10-13 13:15:38,480 | INFO     | exeerrorcode: 0
[2025-10-13 22:16:36] 2025-10-13 13:15:38,481 | INFO     | exeerrordiag: 
[2025-10-13 22:16:36] 2025-10-13 13:15:38,481 | INFO     | exitcode: 0
[2025-10-13 22:16:36] 2025-10-13 13:15:38,481 | INFO     | exitmsg: OK
[2025-10-13 22:16:36] 2025-10-13 13:15:38,481 | INFO     | cpuconsumptiontime: 29462 s
[2025-10-13 22:16:36] 2025-10-13 13:15:38,481 | INFO     | nevents: 400
[2025-10-13 22:16:36] 2025-10-13 13:15:38,481 | INFO     | neventsw: 0
[2025-10-13 22:16:36] 2025-10-13 13:15:38,481 | INFO     | pid: 40331
[2025-10-13 22:16:36] 2025-10-13 13:15:38,481 | INFO     | pgrp: 40331
[2025-10-13 22:16:36] 2025-10-13 13:15:38,481 | INFO     | corecount: 6
[2025-10-13 22:16:36] 2025-10-13 13:15:38,481 | INFO     | event service: False
[2025-10-13 22:16:36] 2025-10-13 13:15:38,481 | INFO     | sizes: {0: 2348857, 3: 2349119, 11: 2349147, 5443: 2384742, 5445: 2384742, 5521: 2384936}
[2025-10-13 22:16:36] 2025-10-13 13:15:38,481 | INFO     | --------------------------------------------------
[2025-10-13 22:16:36] 2025-10-13 13:15:38,482 | INFO     | 
[2025-10-13 22:16:36] 2025-10-13 13:15:38,482 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-13 22:16:36] 2025-10-13 13:15:38,498 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 22:16:36] 2025-10-13 13:15:38,498 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 22:16:36] 2025-10-13 13:15:38,498 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 22:16:36] 2025-10-13 13:15:38,498 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 22:16:36] 2025-10-13 13:15:38,499 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 22:16:36] 2025-10-13 13:15:38,499 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 22:16:36] 2025-10-13 13:15:38,499 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 22:16:36] 2025-10-13 13:15:38,499 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 22:16:36] 2025-10-13 13:15:38,499 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 22:16:36] 2025-10-13 13:15:38,499 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 22:16:36] 2025-10-13 13:15:38,499 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 22:16:36] 2025-10-13 13:15:38,499 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 22:16:36] 2025-10-13 13:15:38,499 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 22:16:36] 2025-10-13 13:15:38,499 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 22:16:36] 2025-10-13 13:15:38,500 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 22:16:36] 2025-10-13 13:15:38,500 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 22:16:36] 2025-10-13 13:15:38,500 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 22:16:36] 2025-10-13 13:15:38,500 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 22:16:36] 2025-10-13 13:15:38,500 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 22:16:36] 2025-10-13 13:15:38,500 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 22:16:36] 2025-10-13 13:15:38,500 | INFO     | job 6840970366 has completed (purged errors)
[2025-10-13 22:16:36] 2025-10-13 13:15:38,500 | INFO     | overall cleanup function is called
[2025-10-13 22:16:36] 2025-10-13 13:15:39,508 | INFO     | --- collectZombieJob: --- 10, [40331]
[2025-10-13 22:16:36] 2025-10-13 13:15:39,508 | INFO     | zombie collector waiting for pid 40331
[2025-10-13 22:16:36] 2025-10-13 13:15:39,508 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 22:16:36] 2025-10-13 13:15:39,508 | INFO     | collected zombie processes
[2025-10-13 22:16:36] 2025-10-13 13:15:39,508 | INFO     | will attempt to kill all subprocesses of pid=40331
[2025-10-13 22:16:36] 2025-10-13 13:15:39,597 | INFO     | process IDs to be killed: [40331] (in reverse order)
[2025-10-13 22:16:36] 2025-10-13 13:15:39,630 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 22:16:36] 2025-10-13 13:15:39,630 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 22:16:36] 2025-10-13 13:15:39,634 | INFO     | did not find any defunct processes belonging to 40331
[2025-10-13 22:16:36] 2025-10-13 13:15:39,637 | INFO     | did not find any defunct processes belonging to 40331
[2025-10-13 22:16:36] 2025-10-13 13:15:39,637 | INFO     | ready for new job
[2025-10-13 22:16:36] 2025-10-13 13:15:39,637 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 22:16:36] 2025-10-13 13:15:39,639 | INFO     | ***************************************
[2025-10-13 22:16:36] 2025-10-13 13:15:39,639 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 22:16:36] 2025-10-13 13:15:39,639 | INFO     | ***************************************
[2025-10-13 22:16:36] 2025-10-13 13:15:39,639 | INFO     | 
[2025-10-13 22:16:36] 2025-10-13 13:15:39,640 | INFO     | architecture information:
[2025-10-13 22:16:36] 2025-10-13 13:15:39,641 | INFO     | executing command: cat /etc/os-release
[2025-10-13 22:16:36] 2025-10-13 13:15:39,651 | INFO     | cat /etc/os-release:
[2025-10-13 22:16:36] NAME="CentOS Linux"
[2025-10-13 22:16:36] VERSION="7 (Core)"
[2025-10-13 22:16:36] ID="centos"
[2025-10-13 22:16:36] ID_LIKE="rhel fedora"
[2025-10-13 22:16:36] VERSION_ID="7"
[2025-10-13 22:16:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 22:16:36] ANSI_COLOR="0;31"
[2025-10-13 22:16:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 22:16:36] HOME_URL="https://www.centos.org/"
[2025-10-13 22:16:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 22:16:36] 
[2025-10-13 22:16:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 22:16:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 22:16:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 22:16:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 22:16:36] 
[2025-10-13 22:16:36] 2025-10-13 13:15:39,652 | INFO     | ***************************************
[2025-10-13 22:16:36] 2025-10-13 13:15:40,155 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-13 22:16:36] 2025-10-13 13:15:40,169 | INFO     | sufficient remaining disk space (97184120832 B)
[2025-10-13 22:16:36] 2025-10-13 13:15:40,170 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 22:16:36] 2025-10-13 13:15:40,170 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 22:16:36] 2025-10-13 13:15:40,170 | INFO     | update_server=False
[2025-10-13 22:16:36] 2025-10-13 13:15:40,170 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 22:16:36] 2025-10-13 13:15:40,170 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:16:36] 2025-10-13 13:15:40,296 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 22:16:36] 2025-10-13 13:15:40,522 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 22:16:36] 2025-10-13 13:15:40,523 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 22:16:36] 2025-10-13 13:15:40,523 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:16:36] 2025-10-13 13:15:40,523 | INFO     | will abort loop
[2025-10-13 22:16:36] 2025-10-13 13:15:40,938 | INFO     | all payload control threads have been joined
[2025-10-13 22:16:36] 2025-10-13 13:15:40,980 | INFO     | all data control threads have been joined
[2025-10-13 22:16:36] 2025-10-13 13:15:41,175 | INFO     | [job] retrieve thread has finished
[2025-10-13 22:16:36] 2025-10-13 13:15:41,175 | INFO     | [job] queue monitor thread has finished
[2025-10-13 22:16:36] 2025-10-13 13:15:41,200 | INFO     | [payload] validate_post thread has finished
[2025-10-13 22:16:36] 2025-10-13 13:15:41,208 | INFO     | [data] copytool_in thread has finished
[2025-10-13 22:16:36] 2025-10-13 13:15:41,259 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 22:16:36] 2025-10-13 13:15:41,496 | INFO     | [payload] failed_post thread has finished
[2025-10-13 22:16:36] 2025-10-13 13:15:41,527 | INFO     | [job] job monitor thread has finished
[2025-10-13 22:16:36] 2025-10-13 13:15:41,855 | INFO     | all job control threads have been joined
[2025-10-13 22:16:36] 2025-10-13 13:15:41,936 | INFO     | [job] validate thread has finished
[2025-10-13 22:16:36] 2025-10-13 13:15:41,944 | INFO     | [payload] control thread has finished
[2025-10-13 22:16:36] 2025-10-13 13:15:41,985 | INFO     | [data] control thread has finished
[2025-10-13 22:16:36] 2025-10-13 13:15:42,147 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 22:16:36] 2025-10-13 13:15:42,172 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 22:16:36] 2025-10-13 13:15:42,255 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 22:16:36] 2025-10-13 13:15:42,861 | INFO     | [job] control thread has finished
[2025-10-13 22:16:36] 2025-10-13 13:15:43,265 | INFO     | [data] copytool_out thread has finished
[2025-10-13 22:16:36] 2025-10-13 13:15:44,302 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 22:16:36] 2025-10-13 13:15:50,292 | INFO     | job.realtimelogging is not enabled
[2025-10-13 22:16:36] 2025-10-13 13:15:51,297 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 22:16:36] 2025-10-13 13:16:09,707 | INFO     | PID=33566 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 22:16:36] 2025-10-13 13:16:09,707 | INFO     | .. there are 2 such processes running
[2025-10-13 22:16:36] 2025-10-13 13:16:09,707 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 22:16:36] 2025-10-13 13:16:09,708 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 22:16:36] 2025-10-13 13:16:09,708 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 22:16:36] 2025-10-13 13:16:30,194 | INFO     | [monitor] cgroup control has ended
[2025-10-13 22:16:36] 2025-10-13 13:16:31,242 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139895765190464)>', '<ExcThread(monitor, started 139895121106688)>']
[2025-10-13 22:16:36] 2025-10-13 13:16:31,818 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 22:16:36] 2025-10-13 13:16:31,818 | INFO     | [monitor] control thread has ended
[2025-10-13 22:16:36] 2025-10-13 13:16:36,267 | INFO     | all workflow threads have been joined
[2025-10-13 22:16:36] 2025-10-13 13:16:36,267 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 22:16:36] 2025-10-13 13:16:36,267 | INFO     | traces error code: 0
[2025-10-13 22:16:36] 2025-10-13 13:16:36,267 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 22:16:36] 2025-10-13 13:16:36,342 [wrapper] ==== pilot stdout END ====
[2025-10-13 22:16:36] 2025-10-13 13:16:36,344 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 22:16:36] 2025-10-13 13:16:36,346 [wrapper] pilotpid: 33566
[2025-10-13 22:16:36] 2025-10-13 13:16:36,348 [wrapper] Pilot exit status: 0
[2025-10-13 22:16:36] 2025-10-13 13:16:36,356 [wrapper] pandaids: 6840970366
[2025-10-13 22:16:36] 2025-10-13 13:16:36,385 [wrapper] cleanup supervisor_pilot   77388 33567
[2025-10-13 22:16:36] 2025-10-13 13:16:36,387 [wrapper] Test setup, not cleaning
[2025-10-13 22:16:36] 2025-10-13 13:16:36,389 [wrapper] apfmon messages muted
[2025-10-13 22:16:36] 2025-10-13 13:16:36,391 [wrapper] ==== wrapper stdout END ====
[2025-10-13 22:16:36] 2025-10-13 13:16:36,393 [wrapper] ==== wrapper stderr END ====
[2025-10-13 22:16:36]  *** Error codes and diagnostics ***
[2025-10-13 22:16:36]     "exeErrorCode": 0,
[2025-10-13 22:16:36]     "exeErrorDiag": "",
[2025-10-13 22:16:36]     "pilotErrorCode": 0,
[2025-10-13 22:16:36]     "pilotErrorDiag": "",
[2025-10-13 22:16:36]  *** Listing of results directory ***
[2025-10-13 22:16:36] total 416600
[2025-10-13 22:16:36] -rw-r--r--. 1 boinc boinc      5112 Oct 13 09:02 queuedata.json
[2025-10-13 22:16:36] -rw-r--r--. 1 boinc boinc    557409 Oct 13 09:02 pilot3.tar.gz
[2025-10-13 22:16:36] -rwx------. 1 boinc boinc     36292 Oct 13 09:02 runpilot2-wrapper.sh
[2025-10-13 22:16:36] -rw-r--r--. 1 boinc boinc       100 Oct 13 20:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 22:16:36] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 20:43 run_atlas
[2025-10-13 22:16:36] -rw-r--r--. 1 boinc boinc       105 Oct 13 20:43 job.xml
[2025-10-13 22:16:36] -rw-r--r--. 2 boinc boinc     15120 Oct 13 20:43 start_atlas.sh
[2025-10-13 22:16:36] drwxrwx--x. 2 boinc boinc        68 Oct 13 20:43 shared
[2025-10-13 22:16:36] -rw-r--r--. 2 boinc boinc    569677 Oct 13 20:43 input.tar.gz
[2025-10-13 22:16:36] -rw-r--r--. 2 boinc boinc 222847598 Oct 13 20:43 EVNT.46676267._004677.pool.root.1
[2025-10-13 22:16:36] -rw-r--r--. 1 boinc boinc         0 Oct 13 20:43 boinc_lockfile
[2025-10-13 22:16:36] -rw-r--r--. 1 boinc boinc      2550 Oct 13 20:43 pandaJob.out
[2025-10-13 22:16:36] -rw-------. 1 boinc boinc    972497 Oct 13 20:43 agis_schedconf.cvmfs.json
[2025-10-13 22:16:36] -rw-------. 1 boinc boinc   1560580 Oct 13 20:43 agis_ddmendpoints.agis.ALL.json
[2025-10-13 22:16:36] drwx------. 5 boinc boinc      4096 Oct 13 20:43 pilot3
[2025-10-13 22:16:36] -rw-r--r--. 1 boinc boinc      9369 Oct 13 21:31 init_data.xml
[2025-10-13 22:16:36] -rw-------. 1 boinc boinc 197646642 Oct 13 22:13 HITS.46676269._092703.pool.root.1
[2025-10-13 22:16:36] -rw-r--r--. 1 boinc boinc       529 Oct 13 22:14 boinc_task_state.xml
[2025-10-13 22:16:36] -rw-------. 1 boinc boinc      1016 Oct 13 22:14 memory_monitor_summary.json
[2025-10-13 22:16:36] -rw-------. 1 boinc boinc    302502 Oct 13 22:14 log.46676269._092703.job.log.tgz.1
[2025-10-13 22:16:36] -rw-------. 1 boinc boinc      7749 Oct 13 22:15 heartbeat.json
[2025-10-13 22:16:36] -rw-r--r--. 1 boinc boinc      8192 Oct 13 22:16 boinc_mmap_file
[2025-10-13 22:16:36] -rw-r--r--. 1 boinc boinc        27 Oct 13 22:16 wrapper_checkpoint.txt
[2025-10-13 22:16:36] -rw-------. 1 boinc boinc        95 Oct 13 22:16 pilot_heartbeat.json
[2025-10-13 22:16:36] -rw-------. 1 boinc boinc      5079 Oct 13 22:16 pilotlog.txt
[2025-10-13 22:16:36] -rw-------. 1 boinc boinc    805978 Oct 13 22:16 log.46676269._092703.job.log.1
[2025-10-13 22:16:36] -rw-------. 1 boinc boinc       357 Oct 13 22:16 output.list
[2025-10-13 22:16:36] -rw-r--r--. 1 boinc boinc       620 Oct 13 22:16 runtime_log
[2025-10-13 22:16:36] -rw-------. 1 boinc boinc   1126400 Oct 13 22:16 result.tar.gz
[2025-10-13 22:16:36] -rw-r--r--. 1 boinc boinc      8661 Oct 13 22:16 runtime_log.err
[2025-10-13 22:16:36] -rw-------. 1 boinc boinc       641 Oct 13 22:16 n32KDm3BLS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmSKVMDmb4laom.diag
[2025-10-13 22:16:36] -rw-r--r--. 1 boinc boinc     21905 Oct 13 22:16 stderr.txt
[2025-10-13 22:16:36] HITS file was successfully produced:
[2025-10-13 22:16:36] -rw-------. 1 boinc boinc 197646642 Oct 13 22:13 shared/HITS.pool.root.1
[2025-10-13 22:16:36]  *** Contents of shared directory: ***
[2025-10-13 22:16:36] total 412320
[2025-10-13 22:16:36] -rw-r--r--. 2 boinc boinc     15120 Oct 13 20:43 start_atlas.sh
[2025-10-13 22:16:36] -rw-r--r--. 2 boinc boinc    569677 Oct 13 20:43 input.tar.gz
[2025-10-13 22:16:36] -rw-r--r--. 2 boinc boinc 222847598 Oct 13 20:43 ATLAS.root_0
[2025-10-13 22:16:36] -rw-------. 1 boinc boinc 197646642 Oct 13 22:13 HITS.pool.root.1
[2025-10-13 22:16:36] -rw-------. 1 boinc boinc   1126400 Oct 13 22:16 result.tar.gz
22:16:38 (29784): run_atlas exited; CPU time 29522.075374
22:16:38 (29784): called boinc_finish(0)

</stderr_txt>
]]>

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