Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:23:24 (3897150): wrapper (7.7.26015): starting
16:23:24 (3897150): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 16:23:24] Arguments: --nthreads 4
[2025-10-13 16:23:24] Threads: 4
[2025-10-13 16:23:24] Checking for CVMFS
[2025-10-13 16:23:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 16:23:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 16:23:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 16:23:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 16:23:25] 2.9.2.0 1850263 5900 98284 151664 3 57 29074868 36864000 0 130560 0 5240208 99.992 202769 739 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 16:23:25] CVMFS is ok
[2025-10-13 16:23:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 16:23:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 16:23:25] Further information can be found at the LHC@home message board.
[2025-10-13 16:23:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 16:23:25] Checking for apptainer binary...
[2025-10-13 16:23:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 16:23:25] Running /usr/bin/apptainer --version
[2025-10-13 16:23:25] apptainer version 1.4.1-1.1
[2025-10-13 16:23:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 16:23:25] thA309
[2025-10-13 16:23:25] apptainer works
[2025-10-13 16:23:25] Set ATHENA_PROC_NUMBER=4
[2025-10-13 16:23:25] Set ATHENA_CORE_NUMBER=4
[2025-10-13 16:23:25] Starting ATLAS job with PandaID=6841125975
[2025-10-13 16:23:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 17:37:50]  *** The last 200 lines of the pilot log: ***
[2025-10-13 17:37:50] 2025-10-13 15:37:18,861 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 17:37:50] 2025-10-13 15:37:18,861 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 17:37:50] 2025-10-13 15:37:18,861 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 17:37:50] 2025-10-13 15:37:18,861 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 17:37:50] 2025-10-13 15:37:18,861 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 17:37:50] 2025-10-13 15:37:18,861 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 17:37:50] 2025-10-13 15:37:18,861 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 17:37:50] 2025-10-13 15:37:18,861 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 17:37:50] 2025-10-13 15:37:18,861 | INFO     | job 6841125975 has completed (purged errors)
[2025-10-13 17:37:50] 2025-10-13 15:37:18,861 | INFO     | overall cleanup function is called
[2025-10-13 17:37:50] 2025-10-13 15:37:19,868 | INFO     | --- collectZombieJob: --- 10, [3907500]
[2025-10-13 17:37:50] 2025-10-13 15:37:19,868 | INFO     | zombie collector waiting for pid 3907500
[2025-10-13 17:37:50] 2025-10-13 15:37:19,868 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 17:37:50] 2025-10-13 15:37:19,868 | INFO     | collected zombie processes
[2025-10-13 17:37:50] 2025-10-13 15:37:19,868 | INFO     | will attempt to kill all subprocesses of pid=3907500
[2025-10-13 17:37:50] 2025-10-13 15:37:19,919 | INFO     | process IDs to be killed: [3907500] (in reverse order)
[2025-10-13 17:37:50] 2025-10-13 15:37:19,955 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 17:37:50] 2025-10-13 15:37:19,956 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 17:37:50] 2025-10-13 15:37:19,958 | INFO     | did not find any defunct processes belonging to 3907500
[2025-10-13 17:37:50] 2025-10-13 15:37:19,959 | INFO     | did not find any defunct processes belonging to 3907500
[2025-10-13 17:37:50] 2025-10-13 15:37:19,959 | INFO     | ready for new job
[2025-10-13 17:37:50] 2025-10-13 15:37:19,959 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 17:37:50] 2025-10-13 15:37:19,960 | INFO     | ***************************************
[2025-10-13 17:37:50] 2025-10-13 15:37:19,960 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 17:37:50] 2025-10-13 15:37:19,960 | INFO     | ***************************************
[2025-10-13 17:37:50] 2025-10-13 15:37:19,960 | INFO     | 
[2025-10-13 17:37:50] 2025-10-13 15:37:19,961 | INFO     | architecture information:
[2025-10-13 17:37:50] 2025-10-13 15:37:19,961 | INFO     | executing command: cat /etc/os-release
[2025-10-13 17:37:50] 2025-10-13 15:37:19,976 | INFO     | cat /etc/os-release:
[2025-10-13 17:37:50] NAME="CentOS Linux"
[2025-10-13 17:37:50] VERSION="7 (Core)"
[2025-10-13 17:37:50] ID="centos"
[2025-10-13 17:37:50] ID_LIKE="rhel fedora"
[2025-10-13 17:37:50] VERSION_ID="7"
[2025-10-13 17:37:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 17:37:50] ANSI_COLOR="0;31"
[2025-10-13 17:37:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 17:37:50] HOME_URL="https://www.centos.org/"
[2025-10-13 17:37:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 17:37:50] 
[2025-10-13 17:37:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 17:37:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 17:37:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 17:37:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 17:37:50] 
[2025-10-13 17:37:50] 2025-10-13 15:37:19,976 | INFO     | ***************************************
[2025-10-13 17:37:50] 2025-10-13 15:37:20,479 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 17:37:50] 2025-10-13 15:37:20,498 | INFO     | sufficient remaining disk space (231332642816 B)
[2025-10-13 17:37:50] 2025-10-13 15:37:20,498 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 17:37:50] 2025-10-13 15:37:20,498 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 17:37:50] 2025-10-13 15:37:20,498 | INFO     | update_server=False
[2025-10-13 17:37:50] 2025-10-13 15:37:20,499 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 17:37:50] 2025-10-13 15:37:20,499 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:37:50] 2025-10-13 15:37:20,499 | INFO     | aborting loop
[2025-10-13 17:37:50] 2025-10-13 15:37:20,499 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:37:50] 2025-10-13 15:37:20,499 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 17:37:50] 2025-10-13 15:37:21,158 | INFO     | all payload control threads have been joined
[2025-10-13 17:37:50] 2025-10-13 15:37:21,504 | INFO     | [job] job monitor thread has finished
[2025-10-13 17:37:50] 2025-10-13 15:37:21,504 | INFO     | [job] retrieve thread has finished
[2025-10-13 17:37:50] 2025-10-13 15:37:21,505 | INFO     | [job] queue monitor thread has finished
[2025-10-13 17:37:50] 2025-10-13 15:37:21,561 | INFO     | all data control threads have been joined
[2025-10-13 17:37:50] 2025-10-13 15:37:21,840 | INFO     | all job control threads have been joined
[2025-10-13 17:37:50] 2025-10-13 15:37:21,898 | INFO     | [payload] failed_post thread has finished
[2025-10-13 17:37:50] 2025-10-13 15:37:21,983 | INFO     | [data] copytool_in thread has finished
[2025-10-13 17:37:50] 2025-10-13 15:37:22,044 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 17:37:50] 2025-10-13 15:37:22,164 | INFO     | [payload] control thread has finished
[2025-10-13 17:37:50] 2025-10-13 15:37:22,505 | INFO     | [data] copytool_out thread has finished
[2025-10-13 17:37:50] 2025-10-13 15:37:22,567 | INFO     | [data] control thread has finished
[2025-10-13 17:37:50] 2025-10-13 15:37:22,743 | INFO     | [job] validate thread has finished
[2025-10-13 17:37:50] 2025-10-13 15:37:22,846 | INFO     | [job] control thread has finished
[2025-10-13 17:37:50] 2025-10-13 15:37:22,885 | INFO     | [payload] validate_post thread has finished
[2025-10-13 17:37:50] 2025-10-13 15:37:22,892 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 17:37:50] 2025-10-13 15:37:22,954 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 17:37:50] 2025-10-13 15:37:23,297 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 17:37:50] 2025-10-13 15:37:27,304 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 17:37:50] 2025-10-13 15:37:30,549 | INFO     | job.realtimelogging is not enabled
[2025-10-13 17:37:50] 2025-10-13 15:37:31,555 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 17:37:50] 2025-10-13 15:37:38,355 | INFO     | [monitor] cgroup control has ended
[2025-10-13 17:37:50] 2025-10-13 15:37:38,711 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139823333431104)>', '<ExcThread(monitor, started 139822182164224)>']
[2025-10-13 17:37:50] 2025-10-13 15:37:43,736 | INFO     | all workflow threads have been joined
[2025-10-13 17:37:50] 2025-10-13 15:37:43,736 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 17:37:50] 2025-10-13 15:37:43,737 | INFO     | traces error code: 0
[2025-10-13 17:37:50] 2025-10-13 15:37:43,737 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 17:37:50] 2025-10-13 15:37:50,620 | INFO     | PID=3900941 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 17:37:50] 2025-10-13 15:37:50,620 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 17:37:50] 2025-10-13 15:37:50,620 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 17:37:50] 2025-10-13 15:37:50,620 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 17:37:50] 2025-10-13 15:37:50,620 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 17:37:50] 2025-10-13 15:37:50,620 | INFO     | [monitor] control thread has ended
[2025-10-13 17:37:50] 2025-10-13 15:37:50,699 [wrapper] ==== pilot stdout END ====
[2025-10-13 17:37:50] 2025-10-13 15:37:50,703 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 17:37:50] 2025-10-13 15:37:50,707 [wrapper] pilotpid: 3900941
[2025-10-13 17:37:50] 2025-10-13 15:37:50,711 [wrapper] Pilot exit status: 0
[2025-10-13 17:37:50] 2025-10-13 15:37:50,724 [wrapper] pandaids: 6841125975
[2025-10-13 17:37:50] 2025-10-13 15:37:50,748 [wrapper] cleanup supervisor_pilot 3918277 3900942
[2025-10-13 17:37:50] 2025-10-13 15:37:50,752 [wrapper] Test setup, not cleaning
[2025-10-13 17:37:50] 2025-10-13 15:37:50,756 [wrapper] apfmon messages muted
[2025-10-13 17:37:50] 2025-10-13 15:37:50,760 [wrapper] ==== wrapper stdout END ====
[2025-10-13 17:37:50] 2025-10-13 15:37:50,764 [wrapper] ==== wrapper stderr END ====
[2025-10-13 17:37:50]  *** Error codes and diagnostics ***
[2025-10-13 17:37:50]     "exeErrorCode": 0,
[2025-10-13 17:37:50]     "exeErrorDiag": "",
[2025-10-13 17:37:50]     "pilotErrorCode": 0,
[2025-10-13 17:37:50]     "pilotErrorDiag": "",
[2025-10-13 17:37:50]  *** Listing of results directory ***
[2025-10-13 17:37:50] total 411892
[2025-10-13 17:37:50] -rw-r--r-- 1 boinc boinc    557409 Oct 13 04:00 pilot3.tar.gz
[2025-10-13 17:37:50] -rwx------ 1 boinc boinc     36292 Oct 13 04:18 runpilot2-wrapper.sh
[2025-10-13 17:37:50] -rw-r--r-- 1 boinc boinc      5112 Oct 13 04:18 queuedata.json
[2025-10-13 17:37:50] -rw-r--r-- 1 boinc boinc       100 Oct 13 16:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 17:37:50] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 16:23 run_atlas
[2025-10-13 17:37:50] -rw-r--r-- 1 boinc boinc       105 Oct 13 16:23 job.xml
[2025-10-13 17:37:50] -rw-r--r-- 2 boinc boinc 221234308 Oct 13 16:23 EVNT.46676267._004370.pool.root.1
[2025-10-13 17:37:50] -rw-r--r-- 2 boinc boinc    569676 Oct 13 16:23 input.tar.gz
[2025-10-13 17:37:50] -rw-r--r-- 2 boinc boinc     15120 Oct 13 16:23 start_atlas.sh
[2025-10-13 17:37:50] drwxrwx--x 2 boinc boinc      4096 Oct 13 16:23 shared
[2025-10-13 17:37:50] -rw-r--r-- 1 boinc boinc         0 Oct 13 16:23 boinc_setup_complete
[2025-10-13 17:37:50] -rw-r--r-- 1 boinc boinc      6377 Oct 13 16:23 init_data.xml
[2025-10-13 17:37:50] -rw-r--r-- 1 boinc boinc         0 Oct 13 16:23 boinc_lockfile
[2025-10-13 17:37:50] -rw-r--r-- 1 boinc boinc      2550 Oct 13 16:23 pandaJob.out
[2025-10-13 17:37:50] -rw------- 1 boinc boinc    972791 Oct 13 16:23 agis_schedconf.cvmfs.json
[2025-10-13 17:37:50] -rw------- 1 boinc boinc   1560580 Oct 13 16:23 agis_ddmendpoints.agis.ALL.json
[2025-10-13 17:37:50] drwx------ 5 boinc boinc      4096 Oct 13 16:23 pilot3
[2025-10-13 17:37:50] -rw------- 1 boinc boinc 194827812 Oct 13 17:36 HITS.46676269._094748.pool.root.1
[2025-10-13 17:37:50] -rw-r--r-- 1 boinc boinc       529 Oct 13 17:36 boinc_task_state.xml
[2025-10-13 17:37:50] -rw------- 1 boinc boinc        95 Oct 13 17:36 pilot_heartbeat.json
[2025-10-13 17:37:50] -rw------- 1 boinc boinc      1018 Oct 13 17:37 memory_monitor_summary.json
[2025-10-13 17:37:50] -rw------- 1 boinc boinc    260888 Oct 13 17:37 log.46676269._094748.job.log.tgz.1
[2025-10-13 17:37:50] -rw------- 1 boinc boinc      7762 Oct 13 17:37 heartbeat.json
[2025-10-13 17:37:50] -rw-r--r-- 1 boinc boinc      8192 Oct 13 17:37 boinc_mmap_file
[2025-10-13 17:37:50] -rw-r--r-- 1 boinc boinc        27 Oct 13 17:37 wrapper_checkpoint.txt
[2025-10-13 17:37:50] -rw------- 1 boinc boinc       747 Oct 13 17:37 pilotlog.txt
[2025-10-13 17:37:50] -rw------- 1 boinc boinc    654534 Oct 13 17:37 log.46676269._094748.job.log.1
[2025-10-13 17:37:50] -rw------- 1 boinc boinc       357 Oct 13 17:37 output.list
[2025-10-13 17:37:50] -rw-r--r-- 1 boinc boinc       620 Oct 13 17:37 runtime_log
[2025-10-13 17:37:50] -rw------- 1 boinc boinc    931840 Oct 13 17:37 result.tar.gz
[2025-10-13 17:37:50] -rw-r--r-- 1 boinc boinc      8777 Oct 13 17:37 runtime_log.err
[2025-10-13 17:37:50] -rw------- 1 boinc boinc       658 Oct 13 17:37 0lMLDmlJNS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwTmNDmT9P4Jn.diag
[2025-10-13 17:37:50] -rw-r--r-- 1 boinc boinc     11713 Oct 13 17:37 stderr.txt
[2025-10-13 17:37:50] HITS file was successfully produced:
[2025-10-13 17:37:50] -rw------- 1 boinc boinc 194827812 Oct 13 17:36 shared/HITS.pool.root.1
[2025-10-13 17:37:50]  *** Contents of shared directory: ***
[2025-10-13 17:37:50] total 407812
[2025-10-13 17:37:50] -rw-r--r-- 2 boinc boinc 221234308 Oct 13 16:23 ATLAS.root_0
[2025-10-13 17:37:50] -rw-r--r-- 2 boinc boinc    569676 Oct 13 16:23 input.tar.gz
[2025-10-13 17:37:50] -rw-r--r-- 2 boinc boinc     15120 Oct 13 16:23 start_atlas.sh
[2025-10-13 17:37:50] -rw------- 1 boinc boinc 194827812 Oct 13 17:36 HITS.pool.root.1
[2025-10-13 17:37:50] -rw------- 1 boinc boinc    931840 Oct 13 17:37 result.tar.gz
17:37:52 (3897150): run_atlas exited; CPU time 16518.020928
17:37:52 (3897150): called boinc_finish(0)

</stderr_txt>
]]>

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