Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
10:37:47 (2933176): wrapper (7.7.26015): starting
10:37:47 (2933176): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 10:37:47] Arguments: --nthreads 4
[2025-10-13 10:37:47] Threads: 4
[2025-10-13 10:37:47] Checking for CVMFS
[2025-10-13 10:37:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 10:37:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 10:37:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 10:37:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 10:37:47] 2.13.2.0 428253 5565 52468 151654 0 187 2292539 4096001 2527 130560 0 18141207 99.997 317116 2345 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-13 10:37:47] CVMFS is ok
[2025-10-13 10:37:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 10:37:47] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-13 10:37:47] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-13 10:37:47] Further information can be found at the LHC@home message board.
[2025-10-13 10:37:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 10:37:47] Checking for apptainer binary...
[2025-10-13 10:37:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 10:37:47] Running /usr/bin/apptainer --version
[2025-10-13 10:37:47] apptainer version 1.4.2
[2025-10-13 10:37:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 10:37:47] Ryzen-9-7950X3D-Zen4-Ubu24
[2025-10-13 10:37:47] apptainer works
[2025-10-13 10:37:47] Set ATHENA_PROC_NUMBER=4
[2025-10-13 10:37:47] Set ATHENA_CORE_NUMBER=4
[2025-10-13 10:37:47] Starting ATLAS job with PandaID=6840969535
[2025-10-13 10:37:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 11:59:07]  *** The last 200 lines of the pilot log: ***
[2025-10-13 11:59:07]  workdir=None
[2025-10-13 11:59:07] ]
[2025-10-13 11:59:07] 2025-10-13 09:58:23,390 | INFO     | transferring file log.46676269._092381.job.log.tgz.1 from /var/lib/boinc-client/slots/18/PanDA_Pilot-6840969535/log.46676269._092381.job.log.tgz.1 to /var/lib/boin
[2025-10-13 11:59:07] 2025-10-13 09:58:23,390 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/18/PanDA_Pilot-6840969535/log.46676269._092381.job.log.tgz.1 /var/lib/boinc-client/slots/18/log.4667
[2025-10-13 11:59:07] 2025-10-13 09:58:23,409 | INFO     | adding to output.list: log.46676269._092381.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b3/51/log.46676269._092381.job.log.tg
[2025-10-13 11:59:07] 2025-10-13 09:58:23,409 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 11:59:07] 2025-10-13 09:58:23,410 | INFO     | summary of transferred files:
[2025-10-13 11:59:07] 2025-10-13 09:58:23,410 | INFO     |  -- lfn=log.46676269._092381.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 11:59:07] 2025-10-13 09:58:23,410 | INFO     | stage-out finished correctly
[2025-10-13 11:59:07] 2025-10-13 09:58:23,832 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 11:59:07] 2025-10-13 09:58:23,882 | INFO     | job 6840969535 has state=finished
[2025-10-13 11:59:07] 2025-10-13 09:58:23,882 | INFO     | preparing for final server update for job 6840969535 in state='finished'
[2025-10-13 11:59:07] 2025-10-13 09:58:23,882 | INFO     | this job has now completed (state=finished)
[2025-10-13 11:59:07] 2025-10-13 09:58:23,882 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 11:59:07] 2025-10-13 09:58:23,882 | INFO     | log transfer has been attempted: DONE
[2025-10-13 11:59:07] 2025-10-13 09:58:23,882 | INFO     | job 6840969535 has finished - writing final server update
[2025-10-13 11:59:07] 2025-10-13 09:58:23,882 | INFO     | total number of processed events: 400 (read)
[2025-10-13 11:59:07] 2025-10-13 09:58:23,883 | INFO     | executing command: lscpu
[2025-10-13 11:59:07] 2025-10-13 09:58:23,940 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 11:59:07] 2025-10-13 09:58:24,232 | INFO     | time since job start (4830s) is within the limit (172800.0s)
[2025-10-13 11:59:07] 2025-10-13 09:58:26,237 | INFO     | time since job start (4832s) is within the limit (172800.0s)
[2025-10-13 11:59:07] 2025-10-13 09:58:26,606 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 11:59:07] 2025-10-13 09:58:26,609 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4517.3547499999995
[2025-10-13 11:59:07] 2025-10-13 09:58:26,611 | INFO     | using path: /var/lib/boinc-client/slots/18/PanDA_Pilot-6840969535/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 11:59:07] 2025-10-13 09:58:26,612 | INFO     | extracted standard info from prmon json
[2025-10-13 11:59:07] 2025-10-13 09:58:26,612 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 11:59:07] 2025-10-13 09:58:26,612 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 11:59:07] 2025-10-13 09:58:26,612 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 11:59:07] 2025-10-13 09:58:26,612 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 11:59:07] 2025-10-13 09:58:26,613 | INFO     | fitting pss+swap vs Time
[2025-10-13 11:59:07] 2025-10-13 09:58:26,613 | INFO     | sum of square deviations: 115715658.0
[2025-10-13 11:59:07] 2025-10-13 09:58:26,613 | INFO     | sum of deviations: -7196590594.999999
[2025-10-13 11:59:07] 2025-10-13 09:58:26,613 | INFO     | mean x: 1760347165.5
[2025-10-13 11:59:07] 2025-10-13 09:58:26,613 | INFO     | mean y: 2395244.222222222
[2025-10-13 11:59:07] 2025-10-13 09:58:26,613 | INFO     | -- intersect: 109481942559.86906
[2025-10-13 11:59:07] 2025-10-13 09:58:26,613 | INFO     | intersect: 109481942559.86906
[2025-10-13 11:59:07] 2025-10-13 09:58:26,613 | INFO     | chi2: 0.01980831335880044
[2025-10-13 11:59:07] 2025-10-13 09:58:26,613 | INFO     | -- intersect: 109481942559.86906
[2025-10-13 11:59:07] 2025-10-13 09:58:26,613 | INFO     | current memory leak: -62.19 B/s (using 72 data points, chi2=0.02)
[2025-10-13 11:59:07] 2025-10-13 09:58:26,613 | INFO     | could have reported an average CPU frequency of 4482 MHz (6 samples)
[2025-10-13 11:59:07] 2025-10-13 09:58:26,613 | INFO     | ..............................
[2025-10-13 11:59:07] 2025-10-13 09:58:26,613 | INFO     | . Timing measurements:
[2025-10-13 11:59:07] 2025-10-13 09:58:26,613 | INFO     | . get job = 0 s
[2025-10-13 11:59:07] 2025-10-13 09:58:26,613 | INFO     | . initial setup = 1 s
[2025-10-13 11:59:07] 2025-10-13 09:58:26,613 | INFO     | . payload setup = 3 s
[2025-10-13 11:59:07] 2025-10-13 09:58:26,614 | INFO     | . stage-in = 0 s
[2025-10-13 11:59:07] 2025-10-13 09:58:26,614 | INFO     | . payload execution = 4806 s
[2025-10-13 11:59:07] 2025-10-13 09:58:26,614 | INFO     | . stage-out = 0 s
[2025-10-13 11:59:07] 2025-10-13 09:58:26,614 | INFO     | . log creation = 0 s
[2025-10-13 11:59:07] 2025-10-13 09:58:26,614 | INFO     | ..............................
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | 
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | job summary report
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | --------------------------------------------------
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | PanDA job id: 6840969535
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | task id: 46676269
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | errors: (none)
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | pilot state: finished 
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | transexitcode: 0
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | exeerrorcode: 0
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | exeerrordiag: 
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | exitcode: 0
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | exitmsg: OK
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | cpuconsumptiontime: 18714 s
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | nevents: 400
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | neventsw: 0
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | pid: 2943685
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | pgrp: 2943685
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | corecount: 4
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | event service: False
[2025-10-13 11:59:07] 2025-10-13 09:58:26,647 | INFO     | sizes: {0: 2348865, 3: 2349127, 11: 2349155, 4814: 2375534, 4815: 2384548, 4816: 2384604, 4819: 2384926}
[2025-10-13 11:59:07] 2025-10-13 09:58:26,648 | INFO     | --------------------------------------------------
[2025-10-13 11:59:07] 2025-10-13 09:58:26,648 | INFO     | 
[2025-10-13 11:59:07] 2025-10-13 09:58:26,648 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/18
[2025-10-13 11:59:07] 2025-10-13 09:58:26,671 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 11:59:07] 2025-10-13 09:58:26,671 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 11:59:07] 2025-10-13 09:58:26,671 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 11:59:07] 2025-10-13 09:58:26,672 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 11:59:07] 2025-10-13 09:58:26,672 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 11:59:07] 2025-10-13 09:58:26,672 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 11:59:07] 2025-10-13 09:58:26,672 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 11:59:07] 2025-10-13 09:58:26,672 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 11:59:07] 2025-10-13 09:58:26,672 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 11:59:07] 2025-10-13 09:58:26,672 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 11:59:07] 2025-10-13 09:58:26,672 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 11:59:07] 2025-10-13 09:58:26,672 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 11:59:07] 2025-10-13 09:58:26,672 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 11:59:07] 2025-10-13 09:58:26,672 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 11:59:07] 2025-10-13 09:58:26,672 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 11:59:07] 2025-10-13 09:58:26,672 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 11:59:07] 2025-10-13 09:58:26,672 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 11:59:07] 2025-10-13 09:58:26,672 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 11:59:07] 2025-10-13 09:58:26,672 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 11:59:07] 2025-10-13 09:58:26,672 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 11:59:07] 2025-10-13 09:58:26,672 | INFO     | job 6840969535 has completed (purged errors)
[2025-10-13 11:59:07] 2025-10-13 09:58:26,672 | INFO     | overall cleanup function is called
[2025-10-13 11:59:07] 2025-10-13 09:58:26,728 | WARNING  | process 2943685 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 11:59:07] 2025-10-13 09:58:26,773 | INFO     | using path: /var/lib/boinc-client/slots/18/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 11:59:07] 2025-10-13 09:58:26,773 | INFO     | using path: /var/lib/boinc-client/slots/18/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 11:59:07] 2025-10-13 09:58:26,774 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-13 11:59:07] 2025-10-13 09:58:26,774 | WARNING  | maxPSS not found in memory monitor output
[2025-10-13 11:59:07] 2025-10-13 09:58:26,774 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc-client/slots/18/PanDA_Pilot-6840969535/payload.stdout) since it has not been created yet
[2025-10-13 11:59:07] 2025-10-13 09:58:26,774 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/18
[2025-10-13 11:59:07] 2025-10-13 09:58:26,801 | INFO     | sufficient remaining disk space (1765942493184 B)
[2025-10-13 11:59:07] 2025-10-13 09:58:26,801 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-10-13 11:59:07] 2025-10-13 09:58:26,801 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/18/PanDA_Pilot-6840969535/HITS.46676269._092381.pool.root.1 since it does not exist
[2025-10-13 11:59:07] 2025-10-13 09:58:26,856 | INFO     | number of running child processes to parent process 2943685: 1
[2025-10-13 11:59:07] 2025-10-13 09:58:26,856 | INFO     | maximum number of monitored processes: 6
[2025-10-13 11:59:07] 2025-10-13 09:58:26,856 | INFO     | aborting job monitoring since job object (job id=6840969535) has expired
[2025-10-13 11:59:07] 2025-10-13 09:58:27,678 | INFO     | --- collectZombieJob: --- 10, [2943685]
[2025-10-13 11:59:07] 2025-10-13 09:58:27,678 | INFO     | zombie collector waiting for pid 2943685
[2025-10-13 11:59:07] 2025-10-13 09:58:27,678 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 11:59:07] 2025-10-13 09:58:27,678 | INFO     | collected zombie processes
[2025-10-13 11:59:07] 2025-10-13 09:58:27,679 | INFO     | will attempt to kill all subprocesses of pid=2943685
[2025-10-13 11:59:07] 2025-10-13 09:58:27,732 | INFO     | process IDs to be killed: [2943685] (in reverse order)
[2025-10-13 11:59:07] 2025-10-13 09:58:27,791 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 11:59:07] 2025-10-13 09:58:27,791 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 11:59:07] 2025-10-13 09:58:27,793 | INFO     | did not find any defunct processes belonging to 2943685
[2025-10-13 11:59:07] 2025-10-13 09:58:27,794 | INFO     | did not find any defunct processes belonging to 2943685
[2025-10-13 11:59:07] 2025-10-13 09:58:27,794 | INFO     | ready for new job
[2025-10-13 11:59:07] 2025-10-13 09:58:27,794 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 11:59:07] 2025-10-13 09:58:27,795 | INFO     | ***************************************
[2025-10-13 11:59:07] 2025-10-13 09:58:27,795 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 11:59:07] 2025-10-13 09:58:27,795 | INFO     | ***************************************
[2025-10-13 11:59:07] 2025-10-13 09:58:27,795 | INFO     | 
[2025-10-13 11:59:07] 2025-10-13 09:58:27,796 | INFO     | architecture information:
[2025-10-13 11:59:07] 2025-10-13 09:58:27,796 | INFO     | executing command: cat /etc/os-release
[2025-10-13 11:59:07] 2025-10-13 09:58:27,823 | INFO     | cat /etc/os-release:
[2025-10-13 11:59:07] NAME="CentOS Linux"
[2025-10-13 11:59:07] VERSION="7 (Core)"
[2025-10-13 11:59:07] ID="centos"
[2025-10-13 11:59:07] ID_LIKE="rhel fedora"
[2025-10-13 11:59:07] VERSION_ID="7"
[2025-10-13 11:59:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 11:59:07] ANSI_COLOR="0;31"
[2025-10-13 11:59:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 11:59:07] HOME_URL="https://www.centos.org/"
[2025-10-13 11:59:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 11:59:07] 
[2025-10-13 11:59:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 11:59:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 11:59:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 11:59:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 11:59:07] 
[2025-10-13 11:59:07] 2025-10-13 09:58:27,823 | INFO     | ***************************************
[2025-10-13 11:59:07] 2025-10-13 09:58:28,327 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/18
[2025-10-13 11:59:07] 2025-10-13 09:58:28,360 | INFO     | sufficient remaining disk space (1765943541760 B)
[2025-10-13 11:59:07] 2025-10-13 09:58:28,360 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 11:59:07] 2025-10-13 09:58:28,361 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 11:59:07] 2025-10-13 09:58:28,361 | INFO     | update_server=False
[2025-10-13 11:59:07] 2025-10-13 09:58:28,361 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 11:59:07] 2025-10-13 09:58:28,361 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:59:07] 2025-10-13 09:58:28,361 | INFO     | aborting loop
[2025-10-13 11:59:07] 2025-10-13 09:58:28,361 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:59:07] 2025-10-13 09:58:28,552 | INFO     | all data control threads have been joined
[2025-10-13 11:59:07] 2025-10-13 09:58:28,945 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 11:59:07] 2025-10-13 09:58:29,284 | INFO     | all payload control threads have been joined
[2025-10-13 11:59:07] 2025-10-13 09:58:29,363 | INFO     | [job] job monitor thread has finished
[2025-10-13 11:59:07] 2025-10-13 09:58:29,363 | INFO     | [job] queue monitor thread has finished
[2025-10-13 11:59:07] 2025-10-13 09:58:29,365 | INFO     | [job] retrieve thread has finished
[2025-10-13 11:59:07] 2025-10-13 09:58:29,557 | INFO     | [data] control thread has finished
[2025-10-13 11:59:07] 2025-10-13 09:58:29,657 | INFO     | [payload] validate_post thread has finished
[2025-10-13 11:59:07] 2025-10-13 09:58:29,884 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 11:59:07] 2025-10-13 09:58:29,941 | INFO     | all job control threads have been joined
[2025-10-13 11:59:07] 2025-10-13 09:58:30,289 | INFO     | [payload] control thread has finished
[2025-10-13 11:59:07] 2025-10-13 09:58:30,381 | INFO     | [data] copytool_in thread has finished
[2025-10-13 11:59:07] 2025-10-13 09:58:30,401 | INFO     | [job] validate thread has finished
[2025-10-13 11:59:07] 2025-10-13 09:58:30,403 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 11:59:07] 2025-10-13 09:58:30,418 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 11:59:07] 2025-10-13 09:58:30,538 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 11:59:07] 2025-10-13 09:58:30,902 | INFO     | [payload] failed_post thread has finished
[2025-10-13 11:59:07] 2025-10-13 09:58:30,945 | INFO     | [job] control thread has finished
[2025-10-13 11:59:07] 2025-10-13 09:58:30,949 | INFO     | [data] copytool_out thread has finished
[2025-10-13 11:59:07] 2025-10-13 09:58:33,890 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 11:59:07] 2025-10-13 09:58:38,982 | INFO     | job.realtimelogging is not enabled
[2025-10-13 11:59:07] 2025-10-13 09:58:39,987 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 11:59:07] 2025-10-13 09:58:58,333 | INFO     | 4834s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-13 11:59:07] 2025-10-13 09:58:59,400 | INFO     | PID=2937038 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 11:59:07] 2025-10-13 09:58:59,400 | INFO     | .. there are 3 such processes running
[2025-10-13 11:59:07] 2025-10-13 09:58:59,400 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 11:59:07] 2025-10-13 09:58:59,400 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 11:59:07] 2025-10-13 09:58:59,400 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 11:59:07] 2025-10-13 09:59:02,188 | INFO     | [monitor] cgroup control has ended
[2025-10-13 11:59:07] 2025-10-13 09:59:02,524 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135430203684672)>', '<ExcThread(monitor, started 135429554685696)>']
[2025-10-13 11:59:07] 2025-10-13 09:59:03,421 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 11:59:07] 2025-10-13 09:59:03,421 | INFO     | [monitor] control thread has ended
[2025-10-13 11:59:07] 2025-10-13 09:59:07,550 | INFO     | all workflow threads have been joined
[2025-10-13 11:59:07] 2025-10-13 09:59:07,550 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 11:59:07] 2025-10-13 09:59:07,550 | INFO     | traces error code: 0
[2025-10-13 11:59:07] 2025-10-13 09:59:07,550 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 11:59:07] 2025-10-13 09:59:07,640 [wrapper] ==== pilot stdout END ====
[2025-10-13 11:59:07] 2025-10-13 09:59:07,643 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 11:59:07] 2025-10-13 09:59:07,648 [wrapper] pilotpid: 2937038
[2025-10-13 11:59:07] 2025-10-13 09:59:07,649 [wrapper] Pilot exit status: 0
[2025-10-13 11:59:07] 2025-10-13 09:59:07,670 [wrapper] pandaids: 6840969535
[2025-10-13 11:59:07] 2025-10-13 09:59:07,697 [wrapper] cleanup supervisor_pilot 3005861 2937039
[2025-10-13 11:59:07] 2025-10-13 09:59:07,698 [wrapper] Test setup, not cleaning
[2025-10-13 11:59:07] 2025-10-13 09:59:07,703 [wrapper] apfmon messages muted
[2025-10-13 11:59:07] 2025-10-13 09:59:07,705 [wrapper] ==== wrapper stdout END ====
[2025-10-13 11:59:07] 2025-10-13 09:59:07,710 [wrapper] ==== wrapper stderr END ====
[2025-10-13 11:59:07]  *** Error codes and diagnostics ***
[2025-10-13 11:59:07]     "exeErrorCode": 0,
[2025-10-13 11:59:07]     "exeErrorDiag": "",
[2025-10-13 11:59:07]     "pilotErrorCode": 0,
[2025-10-13 11:59:07]     "pilotErrorDiag": "",
[2025-10-13 11:59:07]  *** Listing of results directory ***
[2025-10-13 11:59:07] total 409396
[2025-10-13 11:59:07] -rw-r--r-- 1 boinc boinc    557409 Oct 13 01:11 pilot3.tar.gz
[2025-10-13 11:59:07] -rwx------ 1 boinc boinc     36292 Oct 13 01:43 runpilot2-wrapper.sh
[2025-10-13 11:59:07] -rw-r--r-- 1 boinc boinc      5112 Oct 13 01:43 queuedata.json
[2025-10-13 11:59:07] -rw-r--r-- 1 boinc boinc       100 Oct 13 10:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 11:59:07] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 10:37 run_atlas
[2025-10-13 11:59:07] -rw-r--r-- 1 boinc boinc       105 Oct 13 10:37 job.xml
[2025-10-13 11:59:07] -rw-r--r-- 2 boinc boinc 221778880 Oct 13 10:37 EVNT.46676267._004664.pool.root.1
[2025-10-13 11:59:07] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:37 start_atlas.sh
[2025-10-13 11:59:07] drwxrwx--x 2 boinc boinc      4096 Oct 13 10:37 shared
[2025-10-13 11:59:07] -rw-r--r-- 2 boinc boinc    569679 Oct 13 10:37 input.tar.gz
[2025-10-13 11:59:07] -rw-r--r-- 1 boinc boinc         0 Oct 13 10:37 boinc_lockfile
[2025-10-13 11:59:07] -rw-r--r-- 1 boinc boinc      2550 Oct 13 10:37 pandaJob.out
[2025-10-13 11:59:07] -rw------- 1 boinc boinc    972857 Oct 13 10:37 agis_schedconf.cvmfs.json
[2025-10-13 11:59:07] -rw------- 1 boinc boinc   1560580 Oct 13 10:37 agis_ddmendpoints.agis.ALL.json
[2025-10-13 11:59:07] drwx------ 5 boinc boinc      4096 Oct 13 10:37 pilot3
[2025-10-13 11:59:07] -rw-r--r-- 1 boinc boinc      9561 Oct 13 11:52 init_data.xml
[2025-10-13 11:59:07] -rw------- 1 boinc boinc 191532796 Oct 13 11:58 HITS.46676269._092381.pool.root.1
[2025-10-13 11:59:07] -rw-r--r-- 1 boinc boinc       529 Oct 13 11:58 boinc_task_state.xml
[2025-10-13 11:59:07] -rw------- 1 boinc boinc      1025 Oct 13 11:58 memory_monitor_summary.json
[2025-10-13 11:59:07] -rw------- 1 boinc boinc    269715 Oct 13 11:58 log.46676269._092381.job.log.tgz.1
[2025-10-13 11:59:07] -rw------- 1 boinc boinc      7785 Oct 13 11:58 heartbeat.json
[2025-10-13 11:59:07] -rw------- 1 boinc boinc        95 Oct 13 11:58 pilot_heartbeat.json
[2025-10-13 11:59:07] -rw-r--r-- 1 boinc boinc      8192 Oct 13 11:59 boinc_mmap_file
[2025-10-13 11:59:07] -rw-r--r-- 1 boinc boinc        27 Oct 13 11:59 wrapper_checkpoint.txt
[2025-10-13 11:59:07] -rw------- 1 boinc boinc      5020 Oct 13 11:59 pilotlog.txt
[2025-10-13 11:59:07] -rw------- 1 boinc boinc    732252 Oct 13 11:59 log.46676269._092381.job.log.1
[2025-10-13 11:59:07] -rw------- 1 boinc boinc       357 Oct 13 11:59 output.list
[2025-10-13 11:59:07] -rw-r--r-- 1 boinc boinc       620 Oct 13 11:59 runtime_log
[2025-10-13 11:59:07] -rw------- 1 boinc boinc   1024000 Oct 13 11:59 result.tar.gz
[2025-10-13 11:59:07] -rw-r--r-- 1 boinc boinc      8855 Oct 13 11:59 runtime_log.err
[2025-10-13 11:59:07] -rw------- 1 boinc boinc       656 Oct 13 11:59 GI7NDmttKS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmhIVMDmKSUG7m.diag
[2025-10-13 11:59:07] -rw-r--r-- 1 boinc boinc     22545 Oct 13 11:59 stderr.txt
[2025-10-13 11:59:07] HITS file was successfully produced:
[2025-10-13 11:59:07] -rw------- 1 boinc boinc 191532796 Oct 13 11:58 shared/HITS.pool.root.1
[2025-10-13 11:59:07]  *** Contents of shared directory: ***
[2025-10-13 11:59:07] total 405212
[2025-10-13 11:59:07] -rw-r--r-- 2 boinc boinc 221778880 Oct 13 10:37 ATLAS.root_0
[2025-10-13 11:59:07] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:37 start_atlas.sh
[2025-10-13 11:59:07] -rw-r--r-- 2 boinc boinc    569679 Oct 13 10:37 input.tar.gz
[2025-10-13 11:59:07] -rw------- 1 boinc boinc 191532796 Oct 13 11:58 HITS.pool.root.1
[2025-10-13 11:59:07] -rw------- 1 boinc boinc   1024000 Oct 13 11:59 result.tar.gz
11:59:09 (2933176): run_atlas exited; CPU time 18732.012468
11:59:09 (2933176): called boinc_finish(0)

</stderr_txt>
]]>

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