Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:44:53 (2581044): wrapper (7.7.26015): starting
15:44:53 (2581044): wrapper: running run_atlas (--nthreads 2)
[2025-10-13 15:44:53] Arguments: --nthreads 2
[2025-10-13 15:44:53] Threads: 2
[2025-10-13 15:44:53] Checking for CVMFS
[2025-10-13 15:44:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 15:44:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 15:44:53] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 15:44:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 15:44:54] 2.9.2.0 1187580 5893 62092 151662 3 56 27047612 36864000 0 130560 0 3664950 99.989 200599 840 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 15:44:54] CVMFS is ok
[2025-10-13 15:44:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 15:44:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 15:44:54] Further information can be found at the LHC@home message board.
[2025-10-13 15:44:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 15:44:54] Checking for apptainer binary...
[2025-10-13 15:44:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 15:44:54] Running /usr/bin/apptainer --version
[2025-10-13 15:44:54] apptainer version 1.4.1-1.1
[2025-10-13 15:44:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 15:44:54] thA314b
[2025-10-13 15:44:54] apptainer works
[2025-10-13 15:44:54] Set ATHENA_PROC_NUMBER=2
[2025-10-13 15:44:54] Set ATHENA_CORE_NUMBER=2
[2025-10-13 15:44:54] Starting ATLAS job with PandaID=6840961725
[2025-10-13 15:44:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 17:47:29]  *** The last 200 lines of the pilot log: ***
[2025-10-13 17:47:29] 2025-10-13 15:46:58,197 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 17:47:29] 2025-10-13 15:46:58,198 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 17:47:29] 2025-10-13 15:46:58,198 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 17:47:29] 2025-10-13 15:46:58,198 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 17:47:29] 2025-10-13 15:46:58,198 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 17:47:29] 2025-10-13 15:46:58,198 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 17:47:29] 2025-10-13 15:46:58,198 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 17:47:29] 2025-10-13 15:46:58,198 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 17:47:29] 2025-10-13 15:46:58,199 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 17:47:29] 2025-10-13 15:46:58,199 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 17:47:29] 2025-10-13 15:46:58,199 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 17:47:29] 2025-10-13 15:46:58,199 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 17:47:29] 2025-10-13 15:46:58,199 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 17:47:29] 2025-10-13 15:46:58,199 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 17:47:29] 2025-10-13 15:46:58,199 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 17:47:29] 2025-10-13 15:46:58,200 | INFO     | job 6840961725 has completed (purged errors)
[2025-10-13 17:47:29] 2025-10-13 15:46:58,200 | INFO     | overall cleanup function is called
[2025-10-13 17:47:29] 2025-10-13 15:46:59,207 | INFO     | --- collectZombieJob: --- 10, [2591161]
[2025-10-13 17:47:29] 2025-10-13 15:46:59,207 | INFO     | zombie collector waiting for pid 2591161
[2025-10-13 17:47:29] 2025-10-13 15:46:59,207 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 17:47:29] 2025-10-13 15:46:59,208 | INFO     | collected zombie processes
[2025-10-13 17:47:29] 2025-10-13 15:46:59,208 | INFO     | will attempt to kill all subprocesses of pid=2591161
[2025-10-13 17:47:29] 2025-10-13 15:46:59,240 | INFO     | process IDs to be killed: [2591161] (in reverse order)
[2025-10-13 17:47:29] 2025-10-13 15:46:59,261 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 17:47:29] 2025-10-13 15:46:59,261 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 17:47:29] 2025-10-13 15:46:59,261 | INFO     | did not find any defunct processes belonging to 2591161
[2025-10-13 17:47:29] 2025-10-13 15:46:59,262 | INFO     | did not find any defunct processes belonging to 2591161
[2025-10-13 17:47:29] 2025-10-13 15:46:59,262 | INFO     | ready for new job
[2025-10-13 17:47:29] 2025-10-13 15:46:59,262 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 17:47:29] 2025-10-13 15:46:59,263 | INFO     | ***************************************
[2025-10-13 17:47:29] 2025-10-13 15:46:59,263 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 17:47:29] 2025-10-13 15:46:59,263 | INFO     | ***************************************
[2025-10-13 17:47:29] 2025-10-13 15:46:59,263 | INFO     | 
[2025-10-13 17:47:29] 2025-10-13 15:46:59,263 | INFO     | architecture information:
[2025-10-13 17:47:29] 2025-10-13 15:46:59,263 | INFO     | executing command: cat /etc/os-release
[2025-10-13 17:47:29] 2025-10-13 15:46:59,271 | INFO     | cat /etc/os-release:
[2025-10-13 17:47:29] NAME="CentOS Linux"
[2025-10-13 17:47:29] VERSION="7 (Core)"
[2025-10-13 17:47:29] ID="centos"
[2025-10-13 17:47:29] ID_LIKE="rhel fedora"
[2025-10-13 17:47:29] VERSION_ID="7"
[2025-10-13 17:47:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 17:47:29] ANSI_COLOR="0;31"
[2025-10-13 17:47:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 17:47:29] HOME_URL="https://www.centos.org/"
[2025-10-13 17:47:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 17:47:29] 
[2025-10-13 17:47:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 17:47:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 17:47:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 17:47:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 17:47:29] 
[2025-10-13 17:47:29] 2025-10-13 15:46:59,272 | INFO     | ***************************************
[2025-10-13 17:47:29] 2025-10-13 15:46:59,775 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 17:47:29] 2025-10-13 15:46:59,787 | INFO     | sufficient remaining disk space (497469620224 B)
[2025-10-13 17:47:29] 2025-10-13 15:46:59,787 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 17:47:29] 2025-10-13 15:46:59,787 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 17:47:29] 2025-10-13 15:46:59,787 | INFO     | update_server=False
[2025-10-13 17:47:29] 2025-10-13 15:46:59,788 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 17:47:29] 2025-10-13 15:46:59,788 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:47:29] 2025-10-13 15:46:59,788 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 17:47:29] 2025-10-13 15:47:00,223 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:47:29] 2025-10-13 15:47:00,224 | INFO     | aborting loop
[2025-10-13 17:47:29] 2025-10-13 15:47:00,471 | INFO     | all data control threads have been joined
[2025-10-13 17:47:29] 2025-10-13 15:47:00,597 | INFO     | all payload control threads have been joined
[2025-10-13 17:47:29] 2025-10-13 15:47:00,793 | INFO     | [job] retrieve thread has finished
[2025-10-13 17:47:29] 2025-10-13 15:47:00,793 | INFO     | [job] queue monitor thread has finished
[2025-10-13 17:47:29] 2025-10-13 15:47:00,816 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 17:47:29] 2025-10-13 15:47:00,845 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 17:47:29] 2025-10-13 15:47:00,867 | INFO     | [payload] failed_post thread has finished
[2025-10-13 17:47:29] 2025-10-13 15:47:00,877 | INFO     | [job] validate thread has finished
[2025-10-13 17:47:29] 2025-10-13 15:47:00,882 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 17:47:29] 2025-10-13 15:47:01,230 | INFO     | [job] job monitor thread has finished
[2025-10-13 17:47:29] 2025-10-13 15:47:01,331 | INFO     | all job control threads have been joined
[2025-10-13 17:47:29] 2025-10-13 15:47:01,477 | INFO     | [data] control thread has finished
[2025-10-13 17:47:29] 2025-10-13 15:47:01,601 | INFO     | [payload] control thread has finished
[2025-10-13 17:47:29] 2025-10-13 15:47:01,793 | INFO     | [data] copytool_out thread has finished
[2025-10-13 17:47:29] 2025-10-13 15:47:01,853 | INFO     | [payload] validate_post thread has finished
[2025-10-13 17:47:29] 2025-10-13 15:47:02,023 | INFO     | [data] copytool_in thread has finished
[2025-10-13 17:47:29] 2025-10-13 15:47:02,273 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 17:47:29] 2025-10-13 15:47:02,336 | INFO     | [job] control thread has finished
[2025-10-13 17:47:29] 2025-10-13 15:47:03,284 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 17:47:29] 2025-10-13 15:47:07,291 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 17:47:29] 2025-10-13 15:47:17,575 | INFO     | [monitor] cgroup control has ended
[2025-10-13 17:47:29] 2025-10-13 15:47:18,240 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139904349960000)>', '<ExcThread(monitor, started 139903568430848)>']
[2025-10-13 17:47:29] 2025-10-13 15:47:23,266 | INFO     | all workflow threads have been joined
[2025-10-13 17:47:29] 2025-10-13 15:47:23,266 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 17:47:29] 2025-10-13 15:47:23,266 | INFO     | traces error code: 0
[2025-10-13 17:47:29] 2025-10-13 15:47:23,267 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 17:47:29] 2025-10-13 15:47:29,801 | INFO     | PID=2584750 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 17:47:29] 2025-10-13 15:47:29,801 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 17:47:29] 2025-10-13 15:47:29,801 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 17:47:29] 2025-10-13 15:47:29,801 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 17:47:29] 2025-10-13 15:47:29,801 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 17:47:29] 2025-10-13 15:47:29,801 | INFO     | [monitor] control thread has ended
[2025-10-13 17:47:29] 2025-10-13 15:47:29,840 [wrapper] ==== pilot stdout END ====
[2025-10-13 17:47:29] 2025-10-13 15:47:29,843 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 17:47:29] 2025-10-13 15:47:29,845 [wrapper] pilotpid: 2584750
[2025-10-13 17:47:29] 2025-10-13 15:47:29,848 [wrapper] Pilot exit status: 0
[2025-10-13 17:47:29] 2025-10-13 15:47:29,853 [wrapper] pandaids: 6840961725
[2025-10-13 17:47:29] 2025-10-13 15:47:29,865 [wrapper] cleanup supervisor_pilot 2606082 2584751
[2025-10-13 17:47:29] 2025-10-13 15:47:29,867 [wrapper] Test setup, not cleaning
[2025-10-13 17:47:29] 2025-10-13 15:47:29,869 [wrapper] apfmon messages muted
[2025-10-13 17:47:29] 2025-10-13 15:47:29,871 [wrapper] ==== wrapper stdout END ====
[2025-10-13 17:47:29] 2025-10-13 15:47:29,873 [wrapper] ==== wrapper stderr END ====
[2025-10-13 17:47:29]  *** Error codes and diagnostics ***
[2025-10-13 17:47:29]     "exeErrorCode": 0,
[2025-10-13 17:47:29]     "exeErrorDiag": "",
[2025-10-13 17:47:29]     "pilotErrorCode": 0,
[2025-10-13 17:47:29]     "pilotErrorDiag": "",
[2025-10-13 17:47:29]  *** Listing of results directory ***
[2025-10-13 17:47:29] total 404664
[2025-10-13 17:47:29] -rw-r--r-- 1 boinc boinc    557409 Oct 13 01:11 pilot3.tar.gz
[2025-10-13 17:47:29] -rwx------ 1 boinc boinc     36292 Oct 13 01:13 runpilot2-wrapper.sh
[2025-10-13 17:47:29] -rw-r--r-- 1 boinc boinc      5112 Oct 13 01:13 queuedata.json
[2025-10-13 17:47:29] -rw-r--r-- 1 boinc boinc       100 Oct 13 15:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 17:47:29] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 15:44 run_atlas
[2025-10-13 17:47:29] -rw-r--r-- 1 boinc boinc       105 Oct 13 15:44 job.xml
[2025-10-13 17:47:29] -rw-r--r-- 2 boinc boinc 219689448 Oct 13 15:44 EVNT.46676267._004649.pool.root.1
[2025-10-13 17:47:29] -rw-r--r-- 2 boinc boinc    569679 Oct 13 15:44 input.tar.gz
[2025-10-13 17:47:29] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:44 start_atlas.sh
[2025-10-13 17:47:29] drwxrwx--x 2 boinc boinc      4096 Oct 13 15:44 shared
[2025-10-13 17:47:29] -rw-r--r-- 1 boinc boinc         0 Oct 13 15:44 boinc_setup_complete
[2025-10-13 17:47:29] -rw-r--r-- 1 boinc boinc      6207 Oct 13 15:44 init_data.xml
[2025-10-13 17:47:29] -rw-r--r-- 1 boinc boinc         0 Oct 13 15:44 boinc_lockfile
[2025-10-13 17:47:29] -rw-r--r-- 1 boinc boinc      2550 Oct 13 15:44 pandaJob.out
[2025-10-13 17:47:29] -rw------- 1 boinc boinc    972489 Oct 13 15:45 agis_schedconf.cvmfs.json
[2025-10-13 17:47:29] -rw------- 1 boinc boinc   1560580 Oct 13 15:45 agis_ddmendpoints.agis.ALL.json
[2025-10-13 17:47:29] drwx------ 5 boinc boinc      4096 Oct 13 15:45 pilot3
[2025-10-13 17:47:29] -rw------- 1 boinc boinc 188131988 Oct 13 17:46 HITS.46676269._091984.pool.root.1
[2025-10-13 17:47:29] -rw-r--r-- 1 boinc boinc       529 Oct 13 17:46 boinc_task_state.xml
[2025-10-13 17:47:29] -rw------- 1 boinc boinc        95 Oct 13 17:46 pilot_heartbeat.json
[2025-10-13 17:47:29] -rw------- 1 boinc boinc      1012 Oct 13 17:46 memory_monitor_summary.json
[2025-10-13 17:47:29] -rw------- 1 boinc boinc    274979 Oct 13 17:46 log.46676269._091984.job.log.tgz.1
[2025-10-13 17:47:29] -rw------- 1 boinc boinc      7750 Oct 13 17:46 heartbeat.json
[2025-10-13 17:47:29] -rw-r--r-- 1 boinc boinc      8192 Oct 13 17:47 boinc_mmap_file
[2025-10-13 17:47:29] -rw-r--r-- 1 boinc boinc        27 Oct 13 17:47 wrapper_checkpoint.txt
[2025-10-13 17:47:29] -rw------- 1 boinc boinc       747 Oct 13 17:47 pilotlog.txt
[2025-10-13 17:47:29] -rw------- 1 boinc boinc   1055427 Oct 13 17:47 log.46676269._091984.job.log.1
[2025-10-13 17:47:29] -rw------- 1 boinc boinc       357 Oct 13 17:47 output.list
[2025-10-13 17:47:29] -rw-r--r-- 1 boinc boinc       620 Oct 13 17:47 runtime_log
[2025-10-13 17:47:29] -rw------- 1 boinc boinc   1351680 Oct 13 17:47 result.tar.gz
[2025-10-13 17:47:29] -rw-r--r-- 1 boinc boinc      8782 Oct 13 17:47 runtime_log.err
[2025-10-13 17:47:29] -rw------- 1 boinc boinc       660 Oct 13 17:47 CKGODmFRKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmL0lNDmSbV2sn.diag
[2025-10-13 17:47:29] -rw-r--r-- 1 boinc boinc     12349 Oct 13 17:47 stderr.txt
[2025-10-13 17:47:29] HITS file was successfully produced:
[2025-10-13 17:47:29] -rw------- 1 boinc boinc 188131988 Oct 13 17:46 shared/HITS.pool.root.1
[2025-10-13 17:47:29]  *** Contents of shared directory: ***
[2025-10-13 17:47:29] total 400172
[2025-10-13 17:47:29] -rw-r--r-- 2 boinc boinc 219689448 Oct 13 15:44 ATLAS.root_0
[2025-10-13 17:47:29] -rw-r--r-- 2 boinc boinc    569679 Oct 13 15:44 input.tar.gz
[2025-10-13 17:47:29] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:44 start_atlas.sh
[2025-10-13 17:47:29] -rw------- 1 boinc boinc 188131988 Oct 13 17:46 HITS.pool.root.1
[2025-10-13 17:47:29] -rw------- 1 boinc boinc   1351680 Oct 13 17:47 result.tar.gz
17:47:31 (2581044): run_atlas exited; CPU time 14171.084810
17:47:31 (2581044): called boinc_finish(0)

</stderr_txt>
]]>

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