Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:52:37 (3114422): wrapper (7.7.26015): starting
15:52:37 (3114422): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 15:52:37] Arguments: --nthreads 3
[2025-10-13 15:52:37] Threads: 3
[2025-10-13 15:52:37] Checking for CVMFS
[2025-10-13 15:52:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 15:52:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 15:52:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 15:52:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 15:52:37] 2.9.2.0 1484052 5751 70048 151662 2 57 29056172 36864000 0 130560 0 4269390 99.990 201050 965 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 15:52:37] CVMFS is ok
[2025-10-13 15:52:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 15:52:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 15:52:37] Further information can be found at the LHC@home message board.
[2025-10-13 15:52:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 15:52:37] Checking for apptainer binary...
[2025-10-13 15:52:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 15:52:37] Running /usr/bin/apptainer --version
[2025-10-13 15:52:37] apptainer version 1.4.1-1.1
[2025-10-13 15:52:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 15:52:37] magicA244b
[2025-10-13 15:52:37] apptainer works
[2025-10-13 15:52:37] Set ATHENA_PROC_NUMBER=3
[2025-10-13 15:52:37] Set ATHENA_CORE_NUMBER=3
[2025-10-13 15:52:38] Starting ATLAS job with PandaID=6841125907
[2025-10-13 15:52:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 17:19:03]  *** The last 200 lines of the pilot log: ***
[2025-10-13 17:19:03] 2025-10-13 15:18:31,713 | INFO     | overall cleanup function is called
[2025-10-13 17:19:03] 2025-10-13 15:18:32,720 | INFO     | --- collectZombieJob: --- 10, [3124603]
[2025-10-13 17:19:03] 2025-10-13 15:18:32,720 | INFO     | zombie collector waiting for pid 3124603
[2025-10-13 17:19:03] 2025-10-13 15:18:32,720 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 17:19:03] 2025-10-13 15:18:32,720 | INFO     | collected zombie processes
[2025-10-13 17:19:03] 2025-10-13 15:18:32,721 | INFO     | will attempt to kill all subprocesses of pid=3124603
[2025-10-13 17:19:03] 2025-10-13 15:18:32,764 | INFO     | process IDs to be killed: [3124603] (in reverse order)
[2025-10-13 17:19:03] 2025-10-13 15:18:32,788 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 17:19:03] 2025-10-13 15:18:32,788 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 17:19:03] 2025-10-13 15:18:32,789 | INFO     | did not find any defunct processes belonging to 3124603
[2025-10-13 17:19:03] 2025-10-13 15:18:32,790 | INFO     | did not find any defunct processes belonging to 3124603
[2025-10-13 17:19:03] 2025-10-13 15:18:32,790 | INFO     | ready for new job
[2025-10-13 17:19:03] 2025-10-13 15:18:32,790 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 17:19:03] 2025-10-13 15:18:32,791 | INFO     | ***************************************
[2025-10-13 17:19:03] 2025-10-13 15:18:32,791 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 17:19:03] 2025-10-13 15:18:32,791 | INFO     | ***************************************
[2025-10-13 17:19:03] 2025-10-13 15:18:32,791 | INFO     | 
[2025-10-13 17:19:03] 2025-10-13 15:18:32,791 | INFO     | architecture information:
[2025-10-13 17:19:03] 2025-10-13 15:18:32,792 | INFO     | executing command: cat /etc/os-release
[2025-10-13 17:19:03] 2025-10-13 15:18:32,801 | INFO     | cat /etc/os-release:
[2025-10-13 17:19:03] NAME="CentOS Linux"
[2025-10-13 17:19:03] VERSION="7 (Core)"
[2025-10-13 17:19:03] ID="centos"
[2025-10-13 17:19:03] ID_LIKE="rhel fedora"
[2025-10-13 17:19:03] VERSION_ID="7"
[2025-10-13 17:19:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 17:19:03] ANSI_COLOR="0;31"
[2025-10-13 17:19:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 17:19:03] HOME_URL="https://www.centos.org/"
[2025-10-13 17:19:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 17:19:03] 
[2025-10-13 17:19:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 17:19:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 17:19:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 17:19:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 17:19:03] 
[2025-10-13 17:19:03] 2025-10-13 15:18:32,802 | INFO     | ***************************************
[2025-10-13 17:19:03] 2025-10-13 15:18:33,305 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 17:19:03] 2025-10-13 15:18:33,316 | INFO     | sufficient remaining disk space (331879546880 B)
[2025-10-13 17:19:03] 2025-10-13 15:18:33,317 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 17:19:03] 2025-10-13 15:18:33,317 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 17:19:03] 2025-10-13 15:18:33,317 | INFO     | update_server=False
[2025-10-13 17:19:03] 2025-10-13 15:18:33,317 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 17:19:03] 2025-10-13 15:18:33,317 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:19:03] 2025-10-13 15:18:33,665 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:19:03] 2025-10-13 15:18:33,666 | INFO     | aborting loop
[2025-10-13 17:19:03] 2025-10-13 15:18:33,671 | INFO     | all payload control threads have been joined
[2025-10-13 17:19:03] 2025-10-13 15:18:33,983 | INFO     | all data control threads have been joined
[2025-10-13 17:19:03] 2025-10-13 15:18:34,323 | INFO     | [job] queue monitor thread has finished
[2025-10-13 17:19:03] 2025-10-13 15:18:34,324 | INFO     | [job] retrieve thread has finished
[2025-10-13 17:19:03] 2025-10-13 15:18:34,339 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 17:19:03] 2025-10-13 15:18:34,396 | INFO     | [payload] failed_post thread has finished
[2025-10-13 17:19:03] 2025-10-13 15:18:34,672 | INFO     | [job] job monitor thread has finished
[2025-10-13 17:19:03] 2025-10-13 15:18:34,677 | INFO     | [payload] control thread has finished
[2025-10-13 17:19:03] 2025-10-13 15:18:34,723 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 17:19:03] 2025-10-13 15:18:34,741 | INFO     | [data] copytool_in thread has finished
[2025-10-13 17:19:03] 2025-10-13 15:18:34,785 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 17:19:03] 2025-10-13 15:18:34,989 | INFO     | [data] control thread has finished
[2025-10-13 17:19:03] 2025-10-13 15:18:34,996 | INFO     | all job control threads have been joined
[2025-10-13 17:19:03] 2025-10-13 15:18:35,233 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 17:19:03] 2025-10-13 15:18:35,266 | INFO     | [job] validate thread has finished
[2025-10-13 17:19:03] 2025-10-13 15:18:35,367 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 17:19:03] 2025-10-13 15:18:35,473 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 17:19:03] 2025-10-13 15:18:35,858 | INFO     | [payload] validate_post thread has finished
[2025-10-13 17:19:03] 2025-10-13 15:18:36,001 | INFO     | [job] control thread has finished
[2025-10-13 17:19:03] 2025-10-13 15:18:36,345 | INFO     | [data] copytool_out thread has finished
[2025-10-13 17:19:03] 2025-10-13 15:18:39,236 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 17:19:03] 2025-10-13 15:18:56,857 | INFO     | [monitor] cgroup control has ended
[2025-10-13 17:19:03] 2025-10-13 15:18:58,553 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140259409348416)>', '<ExcThread(monitor, started 140258901473024)>']
[2025-10-13 17:19:03] 2025-10-13 15:19:03,138 | INFO     | PID=3118150 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 17:19:03] 2025-10-13 15:19:03,138 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 17:19:03] 2025-10-13 15:19:03,138 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 17:19:03] 2025-10-13 15:19:03,138 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 17:19:03] 2025-10-13 15:19:03,138 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 17:19:03] 2025-10-13 15:19:03,138 | INFO     | [monitor] control thread has ended
[2025-10-13 17:19:03] 2025-10-13 15:19:03,579 | INFO     | all workflow threads have been joined
[2025-10-13 17:19:03] 2025-10-13 15:19:03,579 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 17:19:03] 2025-10-13 15:19:03,580 | INFO     | traces error code: 0
[2025-10-13 17:19:03] 2025-10-13 15:19:03,580 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 17:19:03] 2025-10-13 15:19:03,628 [wrapper] ==== pilot stdout END ====
[2025-10-13 17:19:03] 2025-10-13 15:19:03,631 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 17:19:03] 2025-10-13 15:19:03,633 [wrapper] pilotpid: 3118150
[2025-10-13 17:19:03] 2025-10-13 15:19:03,636 [wrapper] Pilot exit status: 0
[2025-10-13 17:19:03] 2025-10-13 15:19:03,642 [wrapper] pandaids: 6841125907
[2025-10-13 17:19:03] 2025-10-13 15:19:03,659 [wrapper] cleanup supervisor_pilot 3136850 3118151
[2025-10-13 17:19:03] 2025-10-13 15:19:03,662 [wrapper] Test setup, not cleaning
[2025-10-13 17:19:03] 2025-10-13 15:19:03,664 [wrapper] apfmon messages muted
[2025-10-13 17:19:03] 2025-10-13 15:19:03,667 [wrapper] ==== wrapper stdout END ====
[2025-10-13 17:19:03] 2025-10-13 15:19:03,669 [wrapper] ==== wrapper stderr END ====
[2025-10-13 17:19:03]  *** Error codes and diagnostics ***
[2025-10-13 17:19:03]     "exeErrorCode": 0,
[2025-10-13 17:19:03]     "exeErrorDiag": "",
[2025-10-13 17:19:03]     "pilotErrorCode": 0,
[2025-10-13 17:19:03]     "pilotErrorDiag": "",
[2025-10-13 17:19:03]  *** Listing of results directory ***
[2025-10-13 17:19:03] total 408476
[2025-10-13 17:19:03] -rw-r--r-- 1 boinc boinc    557409 Oct 13 04:00 pilot3.tar.gz
[2025-10-13 17:19:03] -rwx------ 1 boinc boinc     36292 Oct 13 04:13 runpilot2-wrapper.sh
[2025-10-13 17:19:03] -rw-r--r-- 1 boinc boinc      5112 Oct 13 04:13 queuedata.json
[2025-10-13 17:19:03] -rw-r--r-- 1 boinc boinc       100 Oct 13 15:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 17:19:03] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 15:52 run_atlas
[2025-10-13 17:19:03] -rw-r--r-- 1 boinc boinc       105 Oct 13 15:52 job.xml
[2025-10-13 17:19:03] -rw-r--r-- 2 boinc boinc 224321410 Oct 13 15:52 EVNT.46676267._004356.pool.root.1
[2025-10-13 17:19:03] -rw-r--r-- 2 boinc boinc    569680 Oct 13 15:52 input.tar.gz
[2025-10-13 17:19:03] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:52 start_atlas.sh
[2025-10-13 17:19:03] drwxrwx--x 2 boinc boinc      4096 Oct 13 15:52 shared
[2025-10-13 17:19:03] -rw-r--r-- 1 boinc boinc         0 Oct 13 15:52 boinc_setup_complete
[2025-10-13 17:19:03] -rw-r--r-- 1 boinc boinc      6200 Oct 13 15:52 init_data.xml
[2025-10-13 17:19:03] -rw-r--r-- 1 boinc boinc         0 Oct 13 15:52 boinc_lockfile
[2025-10-13 17:19:03] -rw-r--r-- 1 boinc boinc      2550 Oct 13 15:52 pandaJob.out
[2025-10-13 17:19:03] -rw------- 1 boinc boinc    972489 Oct 13 15:52 agis_schedconf.cvmfs.json
[2025-10-13 17:19:03] -rw------- 1 boinc boinc   1560580 Oct 13 15:52 agis_ddmendpoints.agis.ALL.json
[2025-10-13 17:19:03] drwx------ 5 boinc boinc      4096 Oct 13 15:52 pilot3
[2025-10-13 17:19:03] -rw-r--r-- 1 boinc boinc       529 Oct 13 17:17 boinc_task_state.xml
[2025-10-13 17:19:03] -rw------- 1 boinc boinc 188035927 Oct 13 17:17 HITS.46676269._094680.pool.root.1
[2025-10-13 17:19:03] -rw------- 1 boinc boinc      1016 Oct 13 17:18 memory_monitor_summary.json
[2025-10-13 17:19:03] -rw------- 1 boinc boinc        95 Oct 13 17:18 pilot_heartbeat.json
[2025-10-13 17:19:03] -rw------- 1 boinc boinc    265488 Oct 13 17:18 log.46676269._094680.job.log.tgz.1
[2025-10-13 17:19:03] -rw------- 1 boinc boinc      7760 Oct 13 17:18 heartbeat.json
[2025-10-13 17:19:03] -rw-r--r-- 1 boinc boinc        27 Oct 13 17:18 wrapper_checkpoint.txt
[2025-10-13 17:19:03] -rw-r--r-- 1 boinc boinc      8192 Oct 13 17:18 boinc_mmap_file
[2025-10-13 17:19:03] -rw------- 1 boinc boinc      4752 Oct 13 17:19 pilotlog.txt
[2025-10-13 17:19:03] -rw------- 1 boinc boinc    753604 Oct 13 17:19 log.46676269._094680.job.log.1
[2025-10-13 17:19:03] -rw------- 1 boinc boinc       357 Oct 13 17:19 output.list
[2025-10-13 17:19:03] -rw-r--r-- 1 boinc boinc       620 Oct 13 17:19 runtime_log
[2025-10-13 17:19:03] -rw------- 1 boinc boinc   1034240 Oct 13 17:19 result.tar.gz
[2025-10-13 17:19:03] -rw-r--r-- 1 boinc boinc      8797 Oct 13 17:19 runtime_log.err
[2025-10-13 17:19:03] -rw------- 1 boinc boinc       662 Oct 13 17:19 6BnLDmKFNS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm6UVMDmaqwQUn.diag
[2025-10-13 17:19:03] -rw-r--r-- 1 boinc boinc     10711 Oct 13 17:19 stderr.txt
[2025-10-13 17:19:03] HITS file was successfully produced:
[2025-10-13 17:19:03] -rw------- 1 boinc boinc 188035927 Oct 13 17:17 shared/HITS.pool.root.1
[2025-10-13 17:19:03]  *** Contents of shared directory: ***
[2025-10-13 17:19:03] total 404292
[2025-10-13 17:19:03] -rw-r--r-- 2 boinc boinc 224321410 Oct 13 15:52 ATLAS.root_0
[2025-10-13 17:19:03] -rw-r--r-- 2 boinc boinc    569680 Oct 13 15:52 input.tar.gz
[2025-10-13 17:19:03] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:52 start_atlas.sh
[2025-10-13 17:19:03] -rw------- 1 boinc boinc 188035927 Oct 13 17:17 HITS.pool.root.1
[2025-10-13 17:19:03] -rw------- 1 boinc boinc   1034240 Oct 13 17:19 result.tar.gz
17:19:05 (3114422): run_atlas exited; CPU time 14711.981647
17:19:05 (3114422): called boinc_finish(0)

</stderr_txt>
]]>

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