Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:56:35 (3887501): wrapper (7.7.26015): starting
15:56:35 (3887501): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 15:56:35] Arguments: --nthreads 4
[2025-10-13 15:56:35] Threads: 4
[2025-10-13 15:56:35] Checking for CVMFS
[2025-10-13 15:56:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 15:56:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 15:56:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 15:56:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 15:56:35] 2.9.2.0 1879657 5758 97536 151662 3 57 26871482 36864000 0 130560 0 5237878 99.992 197580 796 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 15:56:35] CVMFS is ok
[2025-10-13 15:56:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 15:56:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 15:56:35] Further information can be found at the LHC@home message board.
[2025-10-13 15:56:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 15:56:35] Checking for apptainer binary...
[2025-10-13 15:56:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 15:56:35] Running /usr/bin/apptainer --version
[2025-10-13 15:56:35] apptainer version 1.4.1-1.1
[2025-10-13 15:56:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 15:56:35] iaxoA393
[2025-10-13 15:56:35] apptainer works
[2025-10-13 15:56:35] Set ATHENA_PROC_NUMBER=4
[2025-10-13 15:56:35] Set ATHENA_CORE_NUMBER=4
[2025-10-13 15:56:35] Starting ATLAS job with PandaID=6840969496
[2025-10-13 15:56:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 17:07:53]  *** The last 200 lines of the pilot log: ***
[2025-10-13 17:07:53] 2025-10-13 15:07:10,172 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 17:07:53] 2025-10-13 15:07:10,172 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 17:07:53] 2025-10-13 15:07:10,173 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 17:07:53] 2025-10-13 15:07:10,173 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 17:07:53] 2025-10-13 15:07:10,173 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 17:07:53] 2025-10-13 15:07:10,173 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 17:07:53] 2025-10-13 15:07:10,173 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 17:07:53] 2025-10-13 15:07:10,173 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 17:07:53] 2025-10-13 15:07:10,173 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 17:07:53] 2025-10-13 15:07:10,173 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 17:07:53] 2025-10-13 15:07:10,173 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 17:07:53] 2025-10-13 15:07:10,173 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 17:07:53] 2025-10-13 15:07:10,173 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 17:07:53] 2025-10-13 15:07:10,173 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 17:07:53] 2025-10-13 15:07:10,173 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 17:07:53] 2025-10-13 15:07:10,173 | INFO     | job 6840969496 has completed (purged errors)
[2025-10-13 17:07:53] 2025-10-13 15:07:10,173 | INFO     | overall cleanup function is called
[2025-10-13 17:07:53] 2025-10-13 15:07:11,180 | INFO     | --- collectZombieJob: --- 10, [3897842]
[2025-10-13 17:07:53] 2025-10-13 15:07:11,180 | INFO     | zombie collector waiting for pid 3897842
[2025-10-13 17:07:53] 2025-10-13 15:07:11,180 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 17:07:53] 2025-10-13 15:07:11,180 | INFO     | collected zombie processes
[2025-10-13 17:07:53] 2025-10-13 15:07:11,180 | INFO     | will attempt to kill all subprocesses of pid=3897842
[2025-10-13 17:07:53] 2025-10-13 15:07:11,224 | INFO     | process IDs to be killed: [3897842] (in reverse order)
[2025-10-13 17:07:53] 2025-10-13 15:07:11,255 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 17:07:53] 2025-10-13 15:07:11,255 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 17:07:53] 2025-10-13 15:07:11,256 | INFO     | did not find any defunct processes belonging to 3897842
[2025-10-13 17:07:53] 2025-10-13 15:07:11,258 | INFO     | did not find any defunct processes belonging to 3897842
[2025-10-13 17:07:53] 2025-10-13 15:07:11,258 | INFO     | ready for new job
[2025-10-13 17:07:53] 2025-10-13 15:07:11,258 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 17:07:53] 2025-10-13 15:07:11,258 | INFO     | ***************************************
[2025-10-13 17:07:53] 2025-10-13 15:07:11,259 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 17:07:53] 2025-10-13 15:07:11,259 | INFO     | ***************************************
[2025-10-13 17:07:53] 2025-10-13 15:07:11,259 | INFO     | 
[2025-10-13 17:07:53] 2025-10-13 15:07:11,259 | INFO     | architecture information:
[2025-10-13 17:07:53] 2025-10-13 15:07:11,259 | INFO     | executing command: cat /etc/os-release
[2025-10-13 17:07:53] 2025-10-13 15:07:11,272 | INFO     | cat /etc/os-release:
[2025-10-13 17:07:53] NAME="CentOS Linux"
[2025-10-13 17:07:53] VERSION="7 (Core)"
[2025-10-13 17:07:53] ID="centos"
[2025-10-13 17:07:53] ID_LIKE="rhel fedora"
[2025-10-13 17:07:53] VERSION_ID="7"
[2025-10-13 17:07:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 17:07:53] ANSI_COLOR="0;31"
[2025-10-13 17:07:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 17:07:53] HOME_URL="https://www.centos.org/"
[2025-10-13 17:07:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 17:07:53] 
[2025-10-13 17:07:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 17:07:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 17:07:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 17:07:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 17:07:53] 
[2025-10-13 17:07:53] 2025-10-13 15:07:11,272 | INFO     | ***************************************
[2025-10-13 17:07:53] 2025-10-13 15:07:11,773 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 17:07:53] 2025-10-13 15:07:11,788 | INFO     | sufficient remaining disk space (333893861376 B)
[2025-10-13 17:07:53] 2025-10-13 15:07:11,788 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 17:07:53] 2025-10-13 15:07:11,788 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 17:07:53] 2025-10-13 15:07:11,788 | INFO     | update_server=False
[2025-10-13 17:07:53] 2025-10-13 15:07:11,788 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 17:07:53] 2025-10-13 15:07:11,788 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:07:53] 2025-10-13 15:07:12,022 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 17:07:53] 2025-10-13 15:07:12,529 | INFO     | all data control threads have been joined
[2025-10-13 17:07:53] 2025-10-13 15:07:12,587 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:07:53] 2025-10-13 15:07:12,587 | INFO     | aborting loop
[2025-10-13 17:07:53] 2025-10-13 15:07:12,793 | INFO     | [job] retrieve thread has finished
[2025-10-13 17:07:53] 2025-10-13 15:07:12,794 | INFO     | [job] queue monitor thread has finished
[2025-10-13 17:07:53] 2025-10-13 15:07:12,837 | INFO     | all payload control threads have been joined
[2025-10-13 17:07:53] 2025-10-13 15:07:12,969 | INFO     | [payload] failed_post thread has finished
[2025-10-13 17:07:53] 2025-10-13 15:07:13,022 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 17:07:53] 2025-10-13 15:07:13,269 | INFO     | [data] copytool_in thread has finished
[2025-10-13 17:07:53] 2025-10-13 15:07:13,435 | INFO     | all job control threads have been joined
[2025-10-13 17:07:53] 2025-10-13 15:07:13,455 | INFO     | [payload] validate_post thread has finished
[2025-10-13 17:07:53] 2025-10-13 15:07:13,535 | INFO     | [data] control thread has finished
[2025-10-13 17:07:53] 2025-10-13 15:07:13,593 | INFO     | [job] job monitor thread has finished
[2025-10-13 17:07:53] 2025-10-13 15:07:13,843 | INFO     | [payload] control thread has finished
[2025-10-13 17:07:53] 2025-10-13 15:07:14,029 | INFO     | [data] copytool_out thread has finished
[2025-10-13 17:07:53] 2025-10-13 15:07:14,038 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 17:07:53] 2025-10-13 15:07:14,152 | INFO     | [job] validate thread has finished
[2025-10-13 17:07:53] 2025-10-13 15:07:14,225 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 17:07:53] 2025-10-13 15:07:14,441 | INFO     | [job] control thread has finished
[2025-10-13 17:07:53] 2025-10-13 15:07:15,075 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 17:07:53] 2025-10-13 15:07:19,082 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 17:07:53] 2025-10-13 15:07:22,626 | INFO     | job.realtimelogging is not enabled
[2025-10-13 17:07:53] 2025-10-13 15:07:23,631 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 17:07:53] 2025-10-13 15:07:42,688 | INFO     | PID=3891291 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 17:07:53] 2025-10-13 15:07:42,688 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 17:07:53] 2025-10-13 15:07:42,688 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 17:07:53] 2025-10-13 15:07:42,688 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 17:07:53] 2025-10-13 15:07:47,934 | INFO     | [monitor] cgroup control has ended
[2025-10-13 17:07:53] 2025-10-13 15:07:48,026 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139739220903744)>', '<ExcThread(monitor, started 139738262513408)>']
[2025-10-13 17:07:53] 2025-10-13 15:07:48,716 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 17:07:53] 2025-10-13 15:07:48,717 | INFO     | [monitor] control thread has ended
[2025-10-13 17:07:53] 2025-10-13 15:07:53,052 | INFO     | all workflow threads have been joined
[2025-10-13 17:07:53] 2025-10-13 15:07:53,052 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 17:07:53] 2025-10-13 15:07:53,052 | INFO     | traces error code: 0
[2025-10-13 17:07:53] 2025-10-13 15:07:53,053 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 17:07:53] 2025-10-13 15:07:53,119 [wrapper] ==== pilot stdout END ====
[2025-10-13 17:07:53] 2025-10-13 15:07:53,122 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 17:07:53] 2025-10-13 15:07:53,126 [wrapper] pilotpid: 3891291
[2025-10-13 17:07:53] 2025-10-13 15:07:53,130 [wrapper] Pilot exit status: 0
[2025-10-13 17:07:53] 2025-10-13 15:07:53,141 [wrapper] pandaids: 6840969496
[2025-10-13 17:07:53] 2025-10-13 15:07:53,161 [wrapper] cleanup supervisor_pilot 3907926 3891292
[2025-10-13 17:07:53] 2025-10-13 15:07:53,165 [wrapper] Test setup, not cleaning
[2025-10-13 17:07:53] 2025-10-13 15:07:53,169 [wrapper] apfmon messages muted
[2025-10-13 17:07:53] 2025-10-13 15:07:53,172 [wrapper] ==== wrapper stdout END ====
[2025-10-13 17:07:53] 2025-10-13 15:07:53,175 [wrapper] ==== wrapper stderr END ====
[2025-10-13 17:07:53]  *** Error codes and diagnostics ***
[2025-10-13 17:07:53]     "exeErrorCode": 0,
[2025-10-13 17:07:53]     "exeErrorDiag": "",
[2025-10-13 17:07:53]     "pilotErrorCode": 0,
[2025-10-13 17:07:53]     "pilotErrorDiag": "",
[2025-10-13 17:07:53]  *** Listing of results directory ***
[2025-10-13 17:07:53] total 412596
[2025-10-13 17:07:53] -rw-r--r-- 1 boinc boinc    557409 Oct 13 01:11 pilot3.tar.gz
[2025-10-13 17:07:53] -rwx------ 1 boinc boinc     36292 Oct 13 01:38 runpilot2-wrapper.sh
[2025-10-13 17:07:53] -rw-r--r-- 1 boinc boinc      5112 Oct 13 01:38 queuedata.json
[2025-10-13 17:07:53] -rw-r--r-- 1 boinc boinc       100 Oct 13 15:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 17:07:53] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 15:56 run_atlas
[2025-10-13 17:07:53] -rw-r--r-- 1 boinc boinc       105 Oct 13 15:56 job.xml
[2025-10-13 17:07:53] -rw-r--r-- 2 boinc boinc 223561730 Oct 13 15:56 EVNT.46676267._004662.pool.root.1
[2025-10-13 17:07:53] -rw-r--r-- 2 boinc boinc    569677 Oct 13 15:56 input.tar.gz
[2025-10-13 17:07:53] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:56 start_atlas.sh
[2025-10-13 17:07:53] drwxrwx--x 2 boinc boinc      4096 Oct 13 15:56 shared
[2025-10-13 17:07:53] -rw-r--r-- 1 boinc boinc         0 Oct 13 15:56 boinc_setup_complete
[2025-10-13 17:07:53] -rw-r--r-- 1 boinc boinc      6372 Oct 13 15:56 init_data.xml
[2025-10-13 17:07:53] -rw-r--r-- 1 boinc boinc         0 Oct 13 15:56 boinc_lockfile
[2025-10-13 17:07:53] -rw-r--r-- 1 boinc boinc      2550 Oct 13 15:56 pandaJob.out
[2025-10-13 17:07:53] -rw------- 1 boinc boinc    972489 Oct 13 15:56 agis_schedconf.cvmfs.json
[2025-10-13 17:07:53] -rw------- 1 boinc boinc   1560580 Oct 13 15:56 agis_ddmendpoints.agis.ALL.json
[2025-10-13 17:07:53] drwx------ 5 boinc boinc      4096 Oct 13 15:56 pilot3
[2025-10-13 17:07:53] -rw------- 1 boinc boinc 193239958 Oct 13 17:06 HITS.46676269._092342.pool.root.1
[2025-10-13 17:07:53] -rw-r--r-- 1 boinc boinc       529 Oct 13 17:06 boinc_task_state.xml
[2025-10-13 17:07:53] -rw------- 1 boinc boinc      1024 Oct 13 17:06 memory_monitor_summary.json
[2025-10-13 17:07:53] -rw------- 1 boinc boinc    273177 Oct 13 17:07 log.46676269._092342.job.log.tgz.1
[2025-10-13 17:07:53] -rw------- 1 boinc boinc        95 Oct 13 17:07 pilot_heartbeat.json
[2025-10-13 17:07:53] -rw------- 1 boinc boinc      7762 Oct 13 17:07 heartbeat.json
[2025-10-13 17:07:53] -rw-r--r-- 1 boinc boinc      8192 Oct 13 17:07 boinc_mmap_file
[2025-10-13 17:07:53] -rw-r--r-- 1 boinc boinc        27 Oct 13 17:07 wrapper_checkpoint.txt
[2025-10-13 17:07:53] -rw------- 1 boinc boinc      4824 Oct 13 17:07 pilotlog.txt
[2025-10-13 17:07:53] -rw------- 1 boinc boinc    629359 Oct 13 17:07 log.46676269._092342.job.log.1
[2025-10-13 17:07:53] -rw------- 1 boinc boinc       357 Oct 13 17:07 output.list
[2025-10-13 17:07:53] -rw-r--r-- 1 boinc boinc       620 Oct 13 17:07 runtime_log
[2025-10-13 17:07:53] -rw------- 1 boinc boinc    921600 Oct 13 17:07 result.tar.gz
[2025-10-13 17:07:53] -rw-r--r-- 1 boinc boinc      8787 Oct 13 17:07 runtime_log.err
[2025-10-13 17:07:53] -rw------- 1 boinc boinc       660 Oct 13 17:07 OUvMDm6oKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJ4lNDmA5OsNm.diag
[2025-10-13 17:07:53] -rw-r--r-- 1 boinc boinc     12444 Oct 13 17:07 stderr.txt
[2025-10-13 17:07:53] HITS file was successfully produced:
[2025-10-13 17:07:53] -rw------- 1 boinc boinc 193239958 Oct 13 17:06 shared/HITS.pool.root.1
[2025-10-13 17:07:53]  *** Contents of shared directory: ***
[2025-10-13 17:07:53] total 408520
[2025-10-13 17:07:53] -rw-r--r-- 2 boinc boinc 223561730 Oct 13 15:56 ATLAS.root_0
[2025-10-13 17:07:53] -rw-r--r-- 2 boinc boinc    569677 Oct 13 15:56 input.tar.gz
[2025-10-13 17:07:53] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:56 start_atlas.sh
[2025-10-13 17:07:53] -rw------- 1 boinc boinc 193239958 Oct 13 17:06 HITS.pool.root.1
[2025-10-13 17:07:53] -rw------- 1 boinc boinc    921600 Oct 13 17:07 result.tar.gz
17:07:55 (3887501): run_atlas exited; CPU time 15878.755584
17:07:55 (3887501): called boinc_finish(0)

</stderr_txt>
]]>

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