Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:45:46 (2598129): wrapper (7.7.26015): starting
13:45:46 (2598129): wrapper: running run_atlas (--nthreads 2)
[2025-10-13 13:45:46] Arguments: --nthreads 2
[2025-10-13 13:45:46] Threads: 2
[2025-10-13 13:45:46] Checking for CVMFS
[2025-10-13 13:45:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 13:45:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 13:45:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 13:45:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 13:45:46] 2.9.2.0 1554424 4317 59756 151660 3 57 30145065 36864000 0 130560 0 2586696 99.989 148935 792 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 13:45:46] CVMFS is ok
[2025-10-13 13:45:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 13:45:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 13:45:46] Further information can be found at the LHC@home message board.
[2025-10-13 13:45:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 13:45:46] Checking for apptainer binary...
[2025-10-13 13:45:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 13:45:46] Running /usr/bin/apptainer --version
[2025-10-13 13:45:46] apptainer version 1.4.1-1.1
[2025-10-13 13:45:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 13:45:46] thA310
[2025-10-13 13:45:46] apptainer works
[2025-10-13 13:45:46] Set ATHENA_PROC_NUMBER=2
[2025-10-13 13:45:46] Set ATHENA_CORE_NUMBER=2
[2025-10-13 13:45:46] Starting ATLAS job with PandaID=6840969722
[2025-10-13 13:45:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 15:49:18]  *** The last 200 lines of the pilot log: ***
[2025-10-13 15:49:18] 2025-10-13 13:48:47,615 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 15:49:18] 2025-10-13 13:48:47,615 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 15:49:18] 2025-10-13 13:48:47,615 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 15:49:18] 2025-10-13 13:48:47,616 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 15:49:18] 2025-10-13 13:48:47,616 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 15:49:18] 2025-10-13 13:48:47,616 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 15:49:18] 2025-10-13 13:48:47,616 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 15:49:18] 2025-10-13 13:48:47,616 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 15:49:18] 2025-10-13 13:48:47,616 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 15:49:18] 2025-10-13 13:48:47,616 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 15:49:18] 2025-10-13 13:48:47,617 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 15:49:18] 2025-10-13 13:48:47,617 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 15:49:18] 2025-10-13 13:48:47,617 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 15:49:18] 2025-10-13 13:48:47,617 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 15:49:18] 2025-10-13 13:48:47,617 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 15:49:18] 2025-10-13 13:48:47,617 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 15:49:18] 2025-10-13 13:48:47,618 | INFO     | job 6840969722 has completed (purged errors)
[2025-10-13 15:49:18] 2025-10-13 13:48:47,618 | INFO     | overall cleanup function is called
[2025-10-13 15:49:18] 2025-10-13 13:48:48,626 | INFO     | --- collectZombieJob: --- 10, [2608246]
[2025-10-13 15:49:18] 2025-10-13 13:48:48,626 | INFO     | zombie collector waiting for pid 2608246
[2025-10-13 15:49:18] 2025-10-13 13:48:48,626 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 15:49:18] 2025-10-13 13:48:48,627 | INFO     | collected zombie processes
[2025-10-13 15:49:18] 2025-10-13 13:48:48,627 | INFO     | will attempt to kill all subprocesses of pid=2608246
[2025-10-13 15:49:18] 2025-10-13 13:48:48,665 | INFO     | process IDs to be killed: [2608246] (in reverse order)
[2025-10-13 15:49:18] 2025-10-13 13:48:48,688 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 15:49:18] 2025-10-13 13:48:48,688 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 15:49:18] 2025-10-13 13:48:48,689 | INFO     | did not find any defunct processes belonging to 2608246
[2025-10-13 15:49:18] 2025-10-13 13:48:48,690 | INFO     | did not find any defunct processes belonging to 2608246
[2025-10-13 15:49:18] 2025-10-13 13:48:48,690 | INFO     | ready for new job
[2025-10-13 15:49:18] 2025-10-13 13:48:48,690 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 15:49:18] 2025-10-13 13:48:48,691 | INFO     | ***************************************
[2025-10-13 15:49:18] 2025-10-13 13:48:48,691 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 15:49:18] 2025-10-13 13:48:48,691 | INFO     | ***************************************
[2025-10-13 15:49:18] 2025-10-13 13:48:48,691 | INFO     | 
[2025-10-13 15:49:18] 2025-10-13 13:48:48,691 | INFO     | architecture information:
[2025-10-13 15:49:18] 2025-10-13 13:48:48,691 | INFO     | executing command: cat /etc/os-release
[2025-10-13 15:49:18] 2025-10-13 13:48:48,700 | INFO     | cat /etc/os-release:
[2025-10-13 15:49:18] NAME="CentOS Linux"
[2025-10-13 15:49:18] VERSION="7 (Core)"
[2025-10-13 15:49:18] ID="centos"
[2025-10-13 15:49:18] ID_LIKE="rhel fedora"
[2025-10-13 15:49:18] VERSION_ID="7"
[2025-10-13 15:49:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 15:49:18] ANSI_COLOR="0;31"
[2025-10-13 15:49:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 15:49:18] HOME_URL="https://www.centos.org/"
[2025-10-13 15:49:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 15:49:18] 
[2025-10-13 15:49:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 15:49:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 15:49:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 15:49:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 15:49:18] 
[2025-10-13 15:49:18] 2025-10-13 13:48:48,700 | INFO     | ***************************************
[2025-10-13 15:49:18] 2025-10-13 13:48:49,203 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 15:49:18] 2025-10-13 13:48:49,215 | INFO     | sufficient remaining disk space (494293483520 B)
[2025-10-13 15:49:18] 2025-10-13 13:48:49,215 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 15:49:18] 2025-10-13 13:48:49,215 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 15:49:18] 2025-10-13 13:48:49,215 | INFO     | update_server=False
[2025-10-13 15:49:18] 2025-10-13 13:48:49,215 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 15:49:18] 2025-10-13 13:48:49,216 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:49:18] 2025-10-13 13:48:49,259 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 15:49:18] 2025-10-13 13:48:49,260 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 15:49:18] 2025-10-13 13:48:49,260 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:49:18] 2025-10-13 13:48:49,260 | INFO     | will abort loop
[2025-10-13 15:49:18] 2025-10-13 13:48:49,364 | INFO     | all data control threads have been joined
[2025-10-13 15:49:18] 2025-10-13 13:48:49,670 | INFO     | all job control threads have been joined
[2025-10-13 15:49:18] 2025-10-13 13:48:50,068 | INFO     | all payload control threads have been joined
[2025-10-13 15:49:18] 2025-10-13 13:48:50,221 | INFO     | [job] retrieve thread has finished
[2025-10-13 15:49:18] 2025-10-13 13:48:50,222 | INFO     | [job] queue monitor thread has finished
[2025-10-13 15:49:18] 2025-10-13 13:48:50,266 | INFO     | [job] job monitor thread has finished
[2025-10-13 15:49:18] 2025-10-13 13:48:50,294 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 15:49:18] 2025-10-13 13:48:50,321 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 15:49:18] 2025-10-13 13:48:50,321 | INFO     | [job] validate thread has finished
[2025-10-13 15:49:18] 2025-10-13 13:48:50,370 | INFO     | [data] control thread has finished
[2025-10-13 15:49:18] 2025-10-13 13:48:50,675 | INFO     | [job] control thread has finished
[2025-10-13 15:49:18] 2025-10-13 13:48:50,755 | INFO     | [payload] failed_post thread has finished
[2025-10-13 15:49:18] 2025-10-13 13:48:50,979 | INFO     | [data] copytool_in thread has finished
[2025-10-13 15:49:18] 2025-10-13 13:48:51,074 | INFO     | [payload] control thread has finished
[2025-10-13 15:49:18] 2025-10-13 13:48:51,092 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 15:49:18] 2025-10-13 13:48:51,156 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 15:49:18] 2025-10-13 13:48:51,251 | INFO     | [payload] validate_post thread has finished
[2025-10-13 15:49:18] 2025-10-13 13:48:51,304 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 15:49:18] 2025-10-13 13:48:51,676 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 15:49:18] 2025-10-13 13:48:52,300 | INFO     | [data] copytool_out thread has finished
[2025-10-13 15:49:18] 2025-10-13 13:48:55,158 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 15:49:18] 2025-10-13 13:49:11,148 | INFO     | [monitor] cgroup control has ended
[2025-10-13 15:49:18] 2025-10-13 13:49:11,643 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139918760302400)>', '<ExcThread(monitor, started 139918265272064)>']
[2025-10-13 15:49:18] 2025-10-13 13:49:16,669 | INFO     | all workflow threads have been joined
[2025-10-13 15:49:18] 2025-10-13 13:49:16,670 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 15:49:18] 2025-10-13 13:49:16,670 | INFO     | traces error code: 0
[2025-10-13 15:49:18] 2025-10-13 13:49:16,671 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 15:49:18] 2025-10-13 13:49:18,860 | INFO     | PID=2601833 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 15:49:18] 2025-10-13 13:49:18,860 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 15:49:18] 2025-10-13 13:49:18,860 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 15:49:18] 2025-10-13 13:49:18,860 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 15:49:18] 2025-10-13 13:49:18,860 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 15:49:18] 2025-10-13 13:49:18,860 | INFO     | [monitor] control thread has ended
[2025-10-13 15:49:18] 2025-10-13 13:49:18,900 [wrapper] ==== pilot stdout END ====
[2025-10-13 15:49:18] 2025-10-13 13:49:18,902 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 15:49:18] 2025-10-13 13:49:18,905 [wrapper] pilotpid: 2601833
[2025-10-13 15:49:18] 2025-10-13 13:49:18,907 [wrapper] Pilot exit status: 0
[2025-10-13 15:49:18] 2025-10-13 13:49:18,913 [wrapper] pandaids: 6840969722
[2025-10-13 15:49:18] 2025-10-13 13:49:18,927 [wrapper] cleanup supervisor_pilot 2622762 2601834
[2025-10-13 15:49:18] 2025-10-13 13:49:18,929 [wrapper] Test setup, not cleaning
[2025-10-13 15:49:18] 2025-10-13 13:49:18,931 [wrapper] apfmon messages muted
[2025-10-13 15:49:18] 2025-10-13 13:49:18,933 [wrapper] ==== wrapper stdout END ====
[2025-10-13 15:49:18] 2025-10-13 13:49:18,935 [wrapper] ==== wrapper stderr END ====
[2025-10-13 15:49:18]  *** Error codes and diagnostics ***
[2025-10-13 15:49:18]     "exeErrorCode": 0,
[2025-10-13 15:49:18]     "exeErrorDiag": "",
[2025-10-13 15:49:18]     "pilotErrorCode": 0,
[2025-10-13 15:49:18]     "pilotErrorDiag": "",
[2025-10-13 15:49:18]  *** Listing of results directory ***
[2025-10-13 15:49:18] total 408112
[2025-10-13 15:49:18] -rw-r--r-- 1 boinc boinc    557409 Oct 13 01:11 pilot3.tar.gz
[2025-10-13 15:49:18] -rwx------ 1 boinc boinc     36292 Oct 13 01:43 runpilot2-wrapper.sh
[2025-10-13 15:49:18] -rw-r--r-- 1 boinc boinc      5112 Oct 13 01:43 queuedata.json
[2025-10-13 15:49:18] -rw-r--r-- 1 boinc boinc       100 Oct 13 13:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 15:49:18] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 13:45 run_atlas
[2025-10-13 15:49:18] -rw-r--r-- 1 boinc boinc       105 Oct 13 13:45 job.xml
[2025-10-13 15:49:18] -rw-r--r-- 2 boinc boinc 222468087 Oct 13 13:45 EVNT.46676267._004665.pool.root.1
[2025-10-13 15:49:18] drwxrwx--x 2 boinc boinc      4096 Oct 13 13:45 shared
[2025-10-13 15:49:18] -rw-r--r-- 2 boinc boinc    569677 Oct 13 13:45 input.tar.gz
[2025-10-13 15:49:18] -rw-r--r-- 2 boinc boinc     15120 Oct 13 13:45 start_atlas.sh
[2025-10-13 15:49:18] -rw-r--r-- 1 boinc boinc         0 Oct 13 13:45 boinc_setup_complete
[2025-10-13 15:49:18] -rw-r--r-- 1 boinc boinc      6205 Oct 13 13:45 init_data.xml
[2025-10-13 15:49:18] -rw-r--r-- 1 boinc boinc         0 Oct 13 13:45 boinc_lockfile
[2025-10-13 15:49:18] -rw-r--r-- 1 boinc boinc      2550 Oct 13 13:45 pandaJob.out
[2025-10-13 15:49:18] -rw------- 1 boinc boinc    972497 Oct 13 13:45 agis_schedconf.cvmfs.json
[2025-10-13 15:49:18] -rw------- 1 boinc boinc   1560580 Oct 13 13:46 agis_ddmendpoints.agis.ALL.json
[2025-10-13 15:49:18] drwx------ 5 boinc boinc      4096 Oct 13 13:46 pilot3
[2025-10-13 15:49:18] -rw------- 1 boinc boinc 188880815 Oct 13 15:48 HITS.46676269._092406.pool.root.1
[2025-10-13 15:49:18] -rw-r--r-- 1 boinc boinc       529 Oct 13 15:48 boinc_task_state.xml
[2025-10-13 15:49:18] -rw------- 1 boinc boinc      1016 Oct 13 15:48 memory_monitor_summary.json
[2025-10-13 15:49:18] -rw------- 1 boinc boinc        95 Oct 13 15:48 pilot_heartbeat.json
[2025-10-13 15:49:18] -rw------- 1 boinc boinc    272996 Oct 13 15:48 log.46676269._092406.job.log.tgz.1
[2025-10-13 15:49:18] -rw------- 1 boinc boinc      7754 Oct 13 15:48 heartbeat.json
[2025-10-13 15:49:18] -rw-r--r-- 1 boinc boinc        27 Oct 13 15:49 wrapper_checkpoint.txt
[2025-10-13 15:49:18] -rw-r--r-- 1 boinc boinc      8192 Oct 13 15:49 boinc_mmap_file
[2025-10-13 15:49:18] -rw------- 1 boinc boinc       747 Oct 13 15:49 pilotlog.txt
[2025-10-13 15:49:18] -rw------- 1 boinc boinc   1063431 Oct 13 15:49 log.46676269._092406.job.log.1
[2025-10-13 15:49:18] -rw------- 1 boinc boinc       357 Oct 13 15:49 output.list
[2025-10-13 15:49:18] -rw-r--r-- 1 boinc boinc       620 Oct 13 15:49 runtime_log
[2025-10-13 15:49:18] -rw------- 1 boinc boinc   1351680 Oct 13 15:49 result.tar.gz
[2025-10-13 15:49:18] -rw------- 1 boinc boinc       659 Oct 13 15:49 uklKDmutKS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm5IVMDmagFfMo.diag
[2025-10-13 15:49:18] -rw-r--r-- 1 boinc boinc      8777 Oct 13 15:49 runtime_log.err
[2025-10-13 15:49:18] -rw-r--r-- 1 boinc boinc     12681 Oct 13 15:49 stderr.txt
[2025-10-13 15:49:19] HITS file was successfully produced:
[2025-10-13 15:49:19] -rw------- 1 boinc boinc 188880815 Oct 13 15:48 shared/HITS.pool.root.1
[2025-10-13 15:49:19]  *** Contents of shared directory: ***
[2025-10-13 15:49:19] total 403616
[2025-10-13 15:49:19] -rw-r--r-- 2 boinc boinc 222468087 Oct 13 13:45 ATLAS.root_0
[2025-10-13 15:49:19] -rw-r--r-- 2 boinc boinc    569677 Oct 13 13:45 input.tar.gz
[2025-10-13 15:49:19] -rw-r--r-- 2 boinc boinc     15120 Oct 13 13:45 start_atlas.sh
[2025-10-13 15:49:19] -rw------- 1 boinc boinc 188880815 Oct 13 15:48 HITS.pool.root.1
[2025-10-13 15:49:19] -rw------- 1 boinc boinc   1351680 Oct 13 15:49 result.tar.gz
15:49:20 (2598129): run_atlas exited; CPU time 14321.475058
15:49:20 (2598129): called boinc_finish(0)

</stderr_txt>
]]>

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