Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:42:30 (30968): wrapper (7.7.26015): starting
14:42:30 (30968): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 14:42:30] Arguments: --nthreads 8
[2025-10-13 14:42:30] Threads: 8
[2025-10-13 14:42:30] Checking for CVMFS
[2025-10-13 14:42:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 14:42:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 14:42:31] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 14:42:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 14:42:32] 2.11.2.0 22933 138025 144664 151661 3 60 14255026 25165824 4632 130560 0 50067242 99.859 26939083 3155 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-13 14:42:32] CVMFS is ok
[2025-10-13 14:42:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 14:42:32] Checking for apptainer binary...
[2025-10-13 14:42:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 14:42:32] Running /usr/bin/apptainer --version
[2025-10-13 14:42:32] apptainer version 1.3.2-1.el7
[2025-10-13 14:42:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 14:42:40] cg-vwn429.simple-grid.lan
[2025-10-13 14:42:40] apptainer works
[2025-10-13 14:42:40] Set ATHENA_PROC_NUMBER=8
[2025-10-13 14:42:40] Set ATHENA_CORE_NUMBER=8
[2025-10-13 14:42:40] Starting ATLAS job with PandaID=6841124666
[2025-10-13 14:42:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 18:54:06]  *** The last 200 lines of the pilot log: ***
[2025-10-13 18:54:06] 2025-10-13 16:53:16,043 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:54:06] 2025-10-13 16:53:16,982 | INFO     | time since job start (14803s) is within the limit (172800.0s)
[2025-10-13 18:54:06] 2025-10-13 16:53:18,008 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 18:54:06] 2025-10-13 16:53:18,009 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-10-13 18:54:06] 2025-10-13 16:53:18,011 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6841124666/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 18:54:06] 2025-10-13 16:53:18,012 | INFO     | extracted standard info from prmon json
[2025-10-13 18:54:06] 2025-10-13 16:53:18,012 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 18:54:06] 2025-10-13 16:53:18,012 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 18:54:06] 2025-10-13 16:53:18,012 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 18:54:06] 2025-10-13 16:53:18,012 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 18:54:06] 2025-10-13 16:53:18,017 | INFO     | fitting pss+swap vs Time
[2025-10-13 18:54:06] 2025-10-13 16:53:18,018 | INFO     | sum of square deviations: 4024149870.0
[2025-10-13 18:54:06] 2025-10-13 16:53:18,031 | INFO     | sum of deviations: 60766553000.000015
[2025-10-13 18:54:06] 2025-10-13 16:53:18,031 | INFO     | mean x: 1760367216.0
[2025-10-13 18:54:06] 2025-10-13 16:53:18,031 | INFO     | mean y: 2445577.970212766
[2025-10-13 18:54:06] 2025-10-13 16:53:18,032 | INFO     | -- intersect: -26579926149.285187
[2025-10-13 18:54:06] 2025-10-13 16:53:18,032 | INFO     | intersect: -26579926149.285187
[2025-10-13 18:54:06] 2025-10-13 16:53:18,032 | INFO     | chi2: 4.625218658611641
[2025-10-13 18:54:06] 2025-10-13 16:53:18,033 | INFO     | sum of square deviations: 3772712597.5
[2025-10-13 18:54:06] 2025-10-13 16:53:18,034 | INFO     | sum of deviations: 74735313880.0
[2025-10-13 18:54:06] 2025-10-13 16:53:18,035 | INFO     | mean x: 1760367063.5
[2025-10-13 18:54:06] 2025-10-13 16:53:18,035 | INFO     | mean y: 2453887.747826087
[2025-10-13 18:54:06] 2025-10-13 16:53:18,035 | INFO     | -- intersect: -34869427188.44814
[2025-10-13 18:54:06] 2025-10-13 16:53:18,035 | INFO     | intersect: -34869427188.44814
[2025-10-13 18:54:06] 2025-10-13 16:53:18,035 | INFO     | chi2: 3.8849522332731423
[2025-10-13 18:54:06] 2025-10-13 16:53:18,036 | INFO     | current chi2=3.8849522332731423 (change=16.005003870686313 %)
[2025-10-13 18:54:06] 2025-10-13 16:53:18,036 | INFO     | right removable region: 229
[2025-10-13 18:54:06] 2025-10-13 16:53:18,036 | INFO     | sum of square deviations: 3772712597.5
[2025-10-13 18:54:06] 2025-10-13 16:53:18,038 | INFO     | sum of deviations: -11156846533.5
[2025-10-13 18:54:06] 2025-10-13 16:53:18,038 | INFO     | mean x: 1760367368.5
[2025-10-13 18:54:06] 2025-10-13 16:53:18,038 | INFO     | mean y: 2489107.4652173915
[2025-10-13 18:54:06] 2025-10-13 16:53:18,038 | INFO     | -- intersect: 5208331870.56102
[2025-10-13 18:54:06] 2025-10-13 16:53:18,039 | INFO     | intersect: 5208331870.56102
[2025-10-13 18:54:06] 2025-10-13 16:53:18,039 | INFO     | chi2: 0.9507627022665188
[2025-10-13 18:54:06] 2025-10-13 16:53:18,039 | INFO     | current chi2=0.9507627022665188 (change=79.44394043952269 %)
[2025-10-13 18:54:06] 2025-10-13 16:53:18,039 | INFO     | sum of square deviations: 3531973200.0
[2025-10-13 18:54:06] 2025-10-13 16:53:18,041 | INFO     | sum of deviations: -20331517404.0
[2025-10-13 18:54:06] 2025-10-13 16:53:18,041 | INFO     | mean x: 1760367521.0
[2025-10-13 18:54:06] 2025-10-13 16:53:18,041 | INFO     | mean y: 2494874.1022222224
[2025-10-13 18:54:06] 2025-10-13 16:53:18,042 | INFO     | -- intersect: 10135907803.353168
[2025-10-13 18:54:06] 2025-10-13 16:53:18,042 | INFO     | intersect: 10135907803.353168
[2025-10-13 18:54:06] 2025-10-13 16:53:18,042 | INFO     | chi2: 0.8657869559426314
[2025-10-13 18:54:06] 2025-10-13 16:53:18,042 | INFO     | current chi2=0.8657869559426314 (change=8.937639867583583 %)
[2025-10-13 18:54:06] 2025-10-13 16:53:18,042 | INFO     | left removable region: 20
[2025-10-13 18:54:06] 2025-10-13 16:53:18,043 | INFO     | sum of square deviations: 2830787960.0
[2025-10-13 18:54:06] 2025-10-13 16:53:18,044 | INFO     | sum of deviations: 7788870095.0
[2025-10-13 18:54:06] 2025-10-13 16:53:18,044 | INFO     | mean x: 1760367643.0
[2025-10-13 18:54:06] 2025-10-13 16:53:18,045 | INFO     | mean y: 2495363.062200957
[2025-10-13 18:54:06] 2025-10-13 16:53:18,045 | INFO     | -- intersect: -4841129480.802239
[2025-10-13 18:54:06] 2025-10-13 16:53:18,045 | INFO     | intersect: -4841129480.802239
[2025-10-13 18:54:06] 2025-10-13 16:53:18,045 | INFO     | chi2: 0.0011233266736957045
[2025-10-13 18:54:06] 2025-10-13 16:53:18,045 | INFO     | -- intersect: -4841129480.802239
[2025-10-13 18:54:06] 2025-10-13 16:53:18,045 | INFO     | current memory leak: 2.75 B/s (using 209 data points, chi2=0.00)
[2025-10-13 18:54:06] 2025-10-13 16:53:18,046 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-13 18:54:06] 2025-10-13 16:53:18,046 | INFO     | ..............................
[2025-10-13 18:54:06] 2025-10-13 16:53:18,046 | INFO     | . Timing measurements:
[2025-10-13 18:54:06] 2025-10-13 16:53:18,047 | INFO     | . get job = 0 s
[2025-10-13 18:54:06] 2025-10-13 16:53:18,047 | INFO     | . initial setup = 4 s
[2025-10-13 18:54:06] 2025-10-13 16:53:18,047 | INFO     | . payload setup = 132 s
[2025-10-13 18:54:06] 2025-10-13 16:53:18,047 | INFO     | . stage-in = 0 s
[2025-10-13 18:54:06] 2025-10-13 16:53:18,047 | INFO     | . payload execution = 14439 s
[2025-10-13 18:54:06] 2025-10-13 16:53:18,047 | INFO     | . stage-out = 2 s
[2025-10-13 18:54:06] 2025-10-13 16:53:18,047 | INFO     | . log creation = 0 s
[2025-10-13 18:54:06] 2025-10-13 16:53:18,047 | INFO     | ..............................
[2025-10-13 18:54:06] 2025-10-13 16:53:18,161 | INFO     | 
[2025-10-13 18:54:06] 2025-10-13 16:53:18,161 | INFO     | job summary report
[2025-10-13 18:54:06] 2025-10-13 16:53:18,161 | INFO     | --------------------------------------------------
[2025-10-13 18:54:06] 2025-10-13 16:53:18,162 | INFO     | PanDA job id: 6841124666
[2025-10-13 18:54:06] 2025-10-13 16:53:18,162 | INFO     | task id: 46676269
[2025-10-13 18:54:06] 2025-10-13 16:53:18,162 | INFO     | errors: (none)
[2025-10-13 18:54:06] 2025-10-13 16:53:18,162 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 18:54:06] 2025-10-13 16:53:18,162 | INFO     | pilot state: finished 
[2025-10-13 18:54:06] 2025-10-13 16:53:18,162 | INFO     | transexitcode: 0
[2025-10-13 18:54:06] 2025-10-13 16:53:18,162 | INFO     | exeerrorcode: 0
[2025-10-13 18:54:06] 2025-10-13 16:53:18,162 | INFO     | exeerrordiag: 
[2025-10-13 18:54:06] 2025-10-13 16:53:18,162 | INFO     | exitcode: 0
[2025-10-13 18:54:06] 2025-10-13 16:53:18,162 | INFO     | exitmsg: OK
[2025-10-13 18:54:06] 2025-10-13 16:53:18,162 | INFO     | cpuconsumptiontime: 54465 s
[2025-10-13 18:54:06] 2025-10-13 16:53:18,163 | INFO     | nevents: 400
[2025-10-13 18:54:06] 2025-10-13 16:53:18,163 | INFO     | neventsw: 0
[2025-10-13 18:54:06] 2025-10-13 16:53:18,163 | INFO     | pid: 8938
[2025-10-13 18:54:06] 2025-10-13 16:53:18,163 | INFO     | pgrp: 8938
[2025-10-13 18:54:06] 2025-10-13 16:53:18,163 | INFO     | corecount: 8
[2025-10-13 18:54:06] 2025-10-13 16:53:18,163 | INFO     | event service: False
[2025-10-13 18:54:06] 2025-10-13 16:53:18,163 | INFO     | sizes: {0: 2348631, 1: 2348886, 2: 2348886, 12: 2348914, 23: 2348942, 34: 2348970, 44: 2349126, 55: 2349154, 66: 2349182, 77: 2349210, 87: 2349266, 93: 2349836, 98
[2025-10-13 18:54:06] 2025-10-13 16:53:18,163 | INFO     | --------------------------------------------------
[2025-10-13 18:54:06] 2025-10-13 16:53:18,163 | INFO     | 
[2025-10-13 18:54:06] 2025-10-13 16:53:18,163 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-10-13 18:54:06] 2025-10-13 16:53:18,854 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 18:54:06] 2025-10-13 16:53:18,854 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 18:54:06] 2025-10-13 16:53:18,854 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 18:54:06] 2025-10-13 16:53:18,854 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 18:54:06] 2025-10-13 16:53:18,854 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 18:54:06] 2025-10-13 16:53:18,854 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 18:54:06] 2025-10-13 16:53:18,855 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 18:54:06] 2025-10-13 16:53:18,855 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 18:54:06] 2025-10-13 16:53:18,855 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 18:54:06] 2025-10-13 16:53:18,855 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 18:54:06] 2025-10-13 16:53:18,855 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 18:54:06] 2025-10-13 16:53:18,855 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 18:54:06] 2025-10-13 16:53:18,855 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 18:54:06] 2025-10-13 16:53:18,855 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 18:54:06] 2025-10-13 16:53:18,855 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 18:54:06] 2025-10-13 16:53:18,855 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 18:54:06] 2025-10-13 16:53:18,855 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 18:54:06] 2025-10-13 16:53:18,855 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 18:54:06] 2025-10-13 16:53:18,856 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 18:54:06] 2025-10-13 16:53:18,856 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 18:54:06] 2025-10-13 16:53:18,856 | INFO     | job 6841124666 has completed (purged errors)
[2025-10-13 18:54:06] 2025-10-13 16:53:18,856 | INFO     | overall cleanup function is called
[2025-10-13 18:54:06] 2025-10-13 16:53:19,867 | INFO     | --- collectZombieJob: --- 10, [8938]
[2025-10-13 18:54:06] 2025-10-13 16:53:19,867 | INFO     | zombie collector waiting for pid 8938
[2025-10-13 18:54:06] 2025-10-13 16:53:19,867 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 18:54:06] 2025-10-13 16:53:19,867 | INFO     | collected zombie processes
[2025-10-13 18:54:06] 2025-10-13 16:53:19,868 | INFO     | will attempt to kill all subprocesses of pid=8938
[2025-10-13 18:54:06] 2025-10-13 16:53:19,972 | INFO     | process IDs to be killed: [8938] (in reverse order)
[2025-10-13 18:54:06] 2025-10-13 16:53:20,776 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 18:54:06] 2025-10-13 16:53:20,776 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 18:54:06] 2025-10-13 16:53:20,779 | INFO     | did not find any defunct processes belonging to 8938
[2025-10-13 18:54:06] 2025-10-13 16:53:20,782 | INFO     | did not find any defunct processes belonging to 8938
[2025-10-13 18:54:06] 2025-10-13 16:53:20,783 | INFO     | ready for new job
[2025-10-13 18:54:06] 2025-10-13 16:53:20,783 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 18:54:06] 2025-10-13 16:53:20,785 | INFO     | ***************************************
[2025-10-13 18:54:06] 2025-10-13 16:53:20,785 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 18:54:06] 2025-10-13 16:53:20,785 | INFO     | ***************************************
[2025-10-13 18:54:06] 2025-10-13 16:53:20,785 | INFO     | 
[2025-10-13 18:54:06] 2025-10-13 16:53:20,786 | INFO     | pilot is running in a VM
[2025-10-13 18:54:06] 2025-10-13 16:53:20,786 | INFO     | architecture information:
[2025-10-13 18:54:06] 2025-10-13 16:53:20,787 | INFO     | executing command: cat /etc/os-release
[2025-10-13 18:54:06] 2025-10-13 16:53:20,964 | INFO     | cat /etc/os-release:
[2025-10-13 18:54:06] NAME="CentOS Linux"
[2025-10-13 18:54:06] VERSION="7 (Core)"
[2025-10-13 18:54:06] ID="centos"
[2025-10-13 18:54:06] ID_LIKE="rhel fedora"
[2025-10-13 18:54:06] VERSION_ID="7"
[2025-10-13 18:54:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 18:54:06] ANSI_COLOR="0;31"
[2025-10-13 18:54:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 18:54:06] HOME_URL="https://www.centos.org/"
[2025-10-13 18:54:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 18:54:06] 
[2025-10-13 18:54:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 18:54:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 18:54:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 18:54:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 18:54:06] 
[2025-10-13 18:54:06] 2025-10-13 16:53:20,965 | INFO     | ***************************************
[2025-10-13 18:54:06] 2025-10-13 16:53:21,468 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-10-13 18:54:06] 2025-10-13 16:53:21,699 | INFO     | sufficient remaining disk space (496066625536 B)
[2025-10-13 18:54:06] 2025-10-13 16:53:21,699 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 18:54:06] 2025-10-13 16:53:21,699 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 18:54:06] 2025-10-13 16:53:21,699 | INFO     | update_server=False
[2025-10-13 18:54:06] 2025-10-13 16:53:21,699 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 18:54:06] 2025-10-13 16:53:21,699 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 18:54:06] 2025-10-13 16:53:21,703 | INFO     | all payload control threads have been joined
[2025-10-13 18:54:06] 2025-10-13 16:53:22,109 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:54:06] 2025-10-13 16:53:22,109 | INFO     | aborting loop
[2025-10-13 18:54:06] 2025-10-13 16:53:22,229 | INFO     | all data control threads have been joined
[2025-10-13 18:54:06] 2025-10-13 16:53:22,705 | INFO     | [job] retrieve thread has finished
[2025-10-13 18:54:06] 2025-10-13 16:53:22,708 | INFO     | [payload] control thread has finished
[2025-10-13 18:54:06] 2025-10-13 16:53:22,832 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 18:54:06] 2025-10-13 16:53:23,106 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 18:54:06] 2025-10-13 16:53:23,113 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 18:54:06] 2025-10-13 16:53:23,115 | INFO     | [job] job monitor thread has finished
[2025-10-13 18:54:06] 2025-10-13 16:53:23,178 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:54:06] 2025-10-13 16:53:23,235 | INFO     | [data] control thread has finished
[2025-10-13 18:54:06] 2025-10-13 16:53:23,288 | INFO     | all job control threads have been joined
[2025-10-13 18:54:06] 2025-10-13 16:53:23,353 | INFO     | [job] validate thread has finished
[2025-10-13 18:54:06] 2025-10-13 16:53:23,398 | INFO     | [payload] failed_post thread has finished
[2025-10-13 18:54:06] 2025-10-13 16:53:23,718 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 18:54:06] 2025-10-13 16:53:24,013 | INFO     | [payload] validate_post thread has finished
[2025-10-13 18:54:06] 2025-10-13 16:53:24,028 | INFO     | [data] copytool_in thread has finished
[2025-10-13 18:54:06] 2025-10-13 16:53:24,099 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 18:54:06] 2025-10-13 16:53:24,184 | INFO     | [job] queue monitor thread has finished
[2025-10-13 18:54:06] 2025-10-13 16:53:24,294 | INFO     | [job] control thread has finished
[2025-10-13 18:54:06] 2025-10-13 16:53:25,113 | INFO     | [data] copytool_out thread has finished
[2025-10-13 18:54:06] 2025-10-13 16:53:25,708 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 18:54:06] 2025-10-13 16:53:50,184 | INFO     | PID=2335 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 18:54:06] 2025-10-13 16:53:50,184 | INFO     | .. there are 9 such processes running
[2025-10-13 18:54:06] 2025-10-13 16:53:50,185 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 18:54:06] 2025-10-13 16:53:50,186 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 18:54:06] 2025-10-13 16:53:50,186 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 18:54:06] 2025-10-13 16:53:58,362 | INFO     | [monitor] cgroup control has ended
[2025-10-13 18:54:06] 2025-10-13 16:53:58,396 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139845132711744)>', '<ExcThread(monitor, started 139844403590912)>']
[2025-10-13 18:54:06] 2025-10-13 16:53:59,241 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 18:54:06] 2025-10-13 16:53:59,241 | INFO     | [monitor] control thread has ended
[2025-10-13 18:54:06] 2025-10-13 16:54:03,422 | INFO     | all workflow threads have been joined
[2025-10-13 18:54:06] 2025-10-13 16:54:03,422 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 18:54:06] 2025-10-13 16:54:03,423 | INFO     | traces error code: 0
[2025-10-13 18:54:06] 2025-10-13 16:54:03,423 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 18:54:06] 2025-10-13 16:54:03,692 [wrapper] ==== pilot stdout END ====
[2025-10-13 18:54:06] 2025-10-13 16:54:03,785 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 18:54:06] 2025-10-13 16:54:03,951 [wrapper] pilotpid: 2335
[2025-10-13 18:54:06] 2025-10-13 16:54:03,964 [wrapper] Pilot exit status: 0
[2025-10-13 18:54:06] 2025-10-13 16:54:04,446 [wrapper] pandaids: 6841124666
[2025-10-13 18:54:06] 2025-10-13 16:54:05,031 [wrapper] cleanup supervisor_pilot 18382 2336
[2025-10-13 18:54:06] 2025-10-13 16:54:05,046 [wrapper] Test setup, not cleaning
[2025-10-13 18:54:06] 2025-10-13 16:54:05,072 [wrapper] apfmon messages muted
[2025-10-13 18:54:06] 2025-10-13 16:54:05,102 [wrapper] ==== wrapper stdout END ====
[2025-10-13 18:54:06] 2025-10-13 16:54:05,122 [wrapper] ==== wrapper stderr END ====
[2025-10-13 18:54:06]  *** Error codes and diagnostics ***
[2025-10-13 18:54:06]     "exeErrorCode": 0,
[2025-10-13 18:54:06]     "exeErrorDiag": "",
[2025-10-13 18:54:06]     "pilotErrorCode": 0,
[2025-10-13 18:54:06]     "pilotErrorDiag": "",
[2025-10-13 18:54:06]  *** Listing of results directory ***
[2025-10-13 18:54:06] total 417072
[2025-10-13 18:54:06] -rw-r--r--. 1 boinc boinc    557409 Oct 13 04:00 pilot3.tar.gz
[2025-10-13 18:54:06] -rw-r--r--. 1 boinc boinc      5112 Oct 13 04:02 queuedata.json
[2025-10-13 18:54:06] -rwx------. 1 boinc boinc     36292 Oct 13 04:02 runpilot2-wrapper.sh
[2025-10-13 18:54:06] -rw-r--r--. 1 boinc boinc       100 Oct 13 14:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 18:54:06] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 14:42 run_atlas
[2025-10-13 18:54:06] -rw-r--r--. 1 boinc boinc       105 Oct 13 14:42 job.xml
[2025-10-13 18:54:06] -rw-r--r--. 1 boinc boinc      6392 Oct 13 14:42 init_data.xml
[2025-10-13 18:54:06] -rw-r--r--. 2 boinc boinc 221273678 Oct 13 14:42 EVNT.46676267._004376.pool.root.1
[2025-10-13 18:54:06] -rw-r--r--. 2 boinc boinc     15120 Oct 13 14:42 start_atlas.sh
[2025-10-13 18:54:06] drwxrwx--x. 2 boinc boinc        68 Oct 13 14:42 shared
[2025-10-13 18:54:06] -rw-r--r--. 2 boinc boinc    569677 Oct 13 14:42 input.tar.gz
[2025-10-13 18:54:06] -rw-r--r--. 1 boinc boinc         0 Oct 13 14:42 boinc_lockfile
[2025-10-13 18:54:06] -rw-r--r--. 1 boinc boinc      2550 Oct 13 14:42 pandaJob.out
[2025-10-13 18:54:06] -rw-------. 1 boinc boinc    972497 Oct 13 14:46 agis_schedconf.cvmfs.json
[2025-10-13 18:54:06] drwx------. 5 boinc boinc      4096 Oct 13 14:46 pilot3
[2025-10-13 18:54:06] -rw-------. 1 boinc boinc 197004285 Oct 13 18:51 HITS.46676269._094533.pool.root.1
[2025-10-13 18:54:06] -rw-r--r--. 1 boinc boinc       530 Oct 13 18:52 boinc_task_state.xml
[2025-10-13 18:54:06] -rw-------. 1 boinc boinc      1018 Oct 13 18:52 memory_monitor_summary.json
[2025-10-13 18:54:06] -rw-------. 1 boinc boinc   1560580 Oct 13 18:52 agis_ddmendpoints.agis.ALL.json
[2025-10-13 18:54:06] -rw-------. 1 boinc boinc    477999 Oct 13 18:52 log.46676269._094533.job.log.tgz.1
[2025-10-13 18:54:06] -rw-------. 1 boinc boinc      7793 Oct 13 18:53 heartbeat.json
[2025-10-13 18:54:06] -rw-------. 1 boinc boinc        95 Oct 13 18:53 pilot_heartbeat.json
[2025-10-13 18:54:06] -rw-------. 1 boinc boinc      4884 Oct 13 18:54 pilotlog.txt
[2025-10-13 18:54:06] -rw-------. 1 boinc boinc   1985500 Oct 13 18:54 log.46676269._094533.job.log.1
[2025-10-13 18:54:06] -rw-r--r--. 1 boinc boinc        28 Oct 13 18:54 wrapper_checkpoint.txt
[2025-10-13 18:54:06] -rw-r--r--. 1 boinc boinc      8192 Oct 13 18:54 boinc_mmap_file
[2025-10-13 18:54:06] -rw-------. 1 boinc boinc       357 Oct 13 18:54 output.list
[2025-10-13 18:54:06] -rw-r--r--. 1 boinc boinc       620 Oct 13 18:54 runtime_log
[2025-10-13 18:54:06] -rw-------. 1 boinc boinc   2478080 Oct 13 18:54 result.tar.gz
[2025-10-13 18:54:06] -rw-r--r--. 1 boinc boinc      8717 Oct 13 18:54 runtime_log.err
[2025-10-13 18:54:06] -rw-------. 1 boinc boinc       656 Oct 13 18:54 myXMDmc4MS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6QmNDmKDUg4m.diag
[2025-10-13 18:54:06] -rw-r--r--. 1 boinc boinc     20799 Oct 13 18:54 stderr.txt
[2025-10-13 18:54:06] HITS file was successfully produced:
[2025-10-13 18:54:06] -rw-------. 1 boinc boinc 197004285 Oct 13 18:51 shared/HITS.pool.root.1
[2025-10-13 18:54:06]  *** Contents of shared directory: ***
[2025-10-13 18:54:06] total 411472
[2025-10-13 18:54:06] -rw-r--r--. 2 boinc boinc 221273678 Oct 13 14:42 ATLAS.root_0
[2025-10-13 18:54:06] -rw-r--r--. 2 boinc boinc     15120 Oct 13 14:42 start_atlas.sh
[2025-10-13 18:54:06] -rw-r--r--. 2 boinc boinc    569677 Oct 13 14:42 input.tar.gz
[2025-10-13 18:54:06] -rw-------. 1 boinc boinc 197004285 Oct 13 18:51 HITS.pool.root.1
[2025-10-13 18:54:06] -rw-------. 1 boinc boinc   2478080 Oct 13 18:54 result.tar.gz
18:54:08 (30968): run_atlas exited; CPU time 54661.332868
18:54:08 (30968): called boinc_finish(0)

</stderr_txt>
]]>

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