Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:51:24 (3405967): wrapper (7.7.26015): starting
06:51:24 (3405967): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 06:51:24] Arguments: --nthreads 9
[2025-10-13 06:51:24] Threads: 9
[2025-10-13 06:51:24] Checking for CVMFS
[2025-10-13 06:51:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 06:51:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 06:51:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 06:51:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 06:51:45] 2.13.2.0 3695926 130604 266572 151658 2 564 28455044 32935937 27151 16776704 0 220306754 99.573 253990355 29031 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 06:51:45] CVMFS is ok
[2025-10-13 06:51:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 06:51:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 06:51:45] Further information can be found at the LHC@home message board.
[2025-10-13 06:51:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 06:51:45] Checking for apptainer binary...
[2025-10-13 06:51:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 06:51:45] Running /usr/bin/apptainer --version
[2025-10-13 06:51:47] apptainer version 1.4.3-1.el9
[2025-10-13 06:51:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 06:51:49] c6-4-5-3.aglt2.org
[2025-10-13 06:51:49] apptainer works
[2025-10-13 06:51:49] Set ATHENA_PROC_NUMBER=9
[2025-10-13 06:51:49] Set ATHENA_CORE_NUMBER=9
[2025-10-13 06:51:49] Starting ATLAS job with PandaID=6840969227
[2025-10-13 06:51:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 10:34:07]  *** The last 200 lines of the pilot log: ***
[2025-10-13 10:34:07] 2025-10-13 14:33:27,707 | INFO     | fitting pss+swap vs Time
[2025-10-13 10:34:07] 2025-10-13 14:33:27,708 | INFO     | sum of square deviations: 3081952957.25582
[2025-10-13 10:34:07] 2025-10-13 14:33:27,709 | INFO     | sum of deviations: 23703136614.790684
[2025-10-13 10:34:07] 2025-10-13 14:33:27,709 | INFO     | mean x: 1760359381.2790697
[2025-10-13 10:34:07] 2025-10-13 14:33:27,709 | INFO     | mean y: 2150780.353488372
[2025-10-13 10:34:07] 2025-10-13 14:33:27,709 | INFO     | -- intersect: -13536679787.241928
[2025-10-13 10:34:07] 2025-10-13 14:33:27,709 | INFO     | intersect: -13536679787.241928
[2025-10-13 10:34:07] 2025-10-13 14:33:27,710 | INFO     | chi2: 3.045667991964164
[2025-10-13 10:34:07] 2025-10-13 14:33:27,710 | INFO     | sum of square deviations: 2871930109.357132
[2025-10-13 10:34:07] 2025-10-13 14:33:27,802 | INFO     | sum of deviations: 36547339628.928535
[2025-10-13 10:34:07] 2025-10-13 14:33:27,803 | INFO     | mean x: 1760359228.7857144
[2025-10-13 10:34:07] 2025-10-13 14:33:27,803 | INFO     | mean y: 2159934.776190476
[2025-10-13 10:34:07] 2025-10-13 14:33:27,803 | INFO     | -- intersect: -22399654926.15426
[2025-10-13 10:34:07] 2025-10-13 14:33:27,803 | INFO     | intersect: -22399654926.15426
[2025-10-13 10:34:07] 2025-10-13 14:33:27,803 | INFO     | chi2: 2.2400095495698915
[2025-10-13 10:34:07] 2025-10-13 14:33:27,803 | INFO     | current chi2=2.2400095495698915 (change=26.452602336169285 %)
[2025-10-13 10:34:07] 2025-10-13 14:33:27,804 | INFO     | sum of square deviations: 2671610466.243902
[2025-10-13 10:34:07] 2025-10-13 14:33:27,805 | INFO     | sum of deviations: 36228033339.56096
[2025-10-13 10:34:07] 2025-10-13 14:33:27,805 | INFO     | mean x: 1760359076.2682927
[2025-10-13 10:34:07] 2025-10-13 14:33:27,805 | INFO     | mean y: 2159692.117073171
[2025-10-13 10:34:07] 2025-10-13 14:33:27,805 | INFO     | -- intersect: -23868965275.5541
[2025-10-13 10:34:07] 2025-10-13 14:33:27,806 | INFO     | intersect: -23868965275.5541
[2025-10-13 10:34:07] 2025-10-13 14:33:27,838 | INFO     | chi2: 2.2350382922170806
[2025-10-13 10:34:07] 2025-10-13 14:33:27,839 | INFO     | current chi2=2.2350382922170806 (change=0.22193018568896009 %)
[2025-10-13 10:34:07] 2025-10-13 14:33:27,839 | INFO     | right removable region: 204
[2025-10-13 10:34:07] 2025-10-13 14:33:27,839 | INFO     | sum of square deviations: 2871893509.357132
[2025-10-13 10:34:07] 2025-10-13 14:33:27,840 | INFO     | sum of deviations: -15312987236.000004
[2025-10-13 10:34:07] 2025-10-13 14:33:27,841 | INFO     | mean x: 1760359533.7857144
[2025-10-13 10:34:07] 2025-10-13 14:33:27,841 | INFO     | mean y: 2178970.2
[2025-10-13 10:34:07] 2025-10-13 14:33:27,841 | INFO     | -- intersect: 9388447292.407286
[2025-10-13 10:34:07] 2025-10-13 14:33:27,841 | INFO     | intersect: 9388447292.407286
[2025-10-13 10:34:07] 2025-10-13 14:33:27,841 | INFO     | chi2: 1.1688768935710352
[2025-10-13 10:34:07] 2025-10-13 14:33:27,841 | INFO     | current chi2=1.1688768935710352 (change=61.62165749336251 %)
[2025-10-13 10:34:07] 2025-10-13 14:33:27,856 | INFO     | sum of square deviations: 2671601686.439033
[2025-10-13 10:34:07] 2025-10-13 14:33:27,858 | INFO     | sum of deviations: -18842848358.682922
[2025-10-13 10:34:07] 2025-10-13 14:33:27,858 | INFO     | mean x: 1760359686.292683
[2025-10-13 10:34:07] 2025-10-13 14:33:27,858 | INFO     | mean y: 2181574.6780487807
[2025-10-13 10:34:07] 2025-10-13 14:33:27,858 | INFO     | -- intersect: 12418025895.305079
[2025-10-13 10:34:07] 2025-10-13 14:33:27,858 | INFO     | intersect: 12418025895.305079
[2025-10-13 10:34:07] 2025-10-13 14:33:27,859 | INFO     | chi2: 1.0771117659837288
[2025-10-13 10:34:07] 2025-10-13 14:33:27,859 | INFO     | current chi2=1.0771117659837288 (change=7.850709351175107 %)
[2025-10-13 10:34:07] 2025-10-13 14:33:27,859 | INFO     | left removable region: 20
[2025-10-13 10:34:07] 2025-10-13 14:33:27,859 | INFO     | sum of square deviations: 1931861326.9510827
[2025-10-13 10:34:07] 2025-10-13 14:33:27,868 | INFO     | sum of deviations: 4529479337.179347
[2025-10-13 10:34:07] 2025-10-13 14:33:27,869 | INFO     | mean x: 1760359655.7663043
[2025-10-13 10:34:07] 2025-10-13 14:33:27,869 | INFO     | mean y: 2184985.190217391
[2025-10-13 10:34:07] 2025-10-13 14:33:27,869 | INFO     | -- intersect: -4125188225.0710196
[2025-10-13 10:34:07] 2025-10-13 14:33:27,869 | INFO     | intersect: -4125188225.0710196
[2025-10-13 10:34:07] 2025-10-13 14:33:27,869 | INFO     | chi2: 0.10477041135589421
[2025-10-13 10:34:07] 2025-10-13 14:33:27,870 | INFO     | -- intersect: -4125188225.0710196
[2025-10-13 10:34:07] 2025-10-13 14:33:27,870 | INFO     | current memory leak: 2.34 B/s (using 184 data points, chi2=0.10)
[2025-10-13 10:34:07] 2025-10-13 14:33:27,870 | INFO     | could have reported an average CPU frequency of 2814 MHz (11 samples)
[2025-10-13 10:34:07] 2025-10-13 14:33:27,871 | INFO     | ..............................
[2025-10-13 10:34:07] 2025-10-13 14:33:27,871 | INFO     | . Timing measurements:
[2025-10-13 10:34:07] 2025-10-13 14:33:27,871 | INFO     | . get job = 0 s
[2025-10-13 10:34:07] 2025-10-13 14:33:27,871 | INFO     | . initial setup = 4 s
[2025-10-13 10:34:07] 2025-10-13 14:33:27,871 | INFO     | . payload setup = 29 s
[2025-10-13 10:34:07] 2025-10-13 14:33:27,871 | INFO     | . stage-in = 0 s
[2025-10-13 10:34:07] 2025-10-13 14:33:27,871 | INFO     | . payload execution = 13123 s
[2025-10-13 10:34:07] 2025-10-13 14:33:27,871 | INFO     | . stage-out = 5 s
[2025-10-13 10:34:07] 2025-10-13 14:33:27,871 | INFO     | . log creation = 0 s
[2025-10-13 10:34:07] 2025-10-13 14:33:27,871 | INFO     | ..............................
[2025-10-13 10:34:07] 2025-10-13 14:33:29,040 | INFO     | 
[2025-10-13 10:34:07] 2025-10-13 14:33:29,040 | INFO     | job summary report
[2025-10-13 10:34:07] 2025-10-13 14:33:29,040 | INFO     | --------------------------------------------------
[2025-10-13 10:34:07] 2025-10-13 14:33:29,040 | INFO     | PanDA job id: 6840969227
[2025-10-13 10:34:07] 2025-10-13 14:33:29,040 | INFO     | task id: 46676269
[2025-10-13 10:34:07] 2025-10-13 14:33:29,040 | INFO     | errors: (none)
[2025-10-13 10:34:07] 2025-10-13 14:33:29,040 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 10:34:07] 2025-10-13 14:33:29,040 | INFO     | pilot state: finished 
[2025-10-13 10:34:07] 2025-10-13 14:33:29,041 | INFO     | transexitcode: 0
[2025-10-13 10:34:07] 2025-10-13 14:33:29,041 | INFO     | exeerrorcode: 0
[2025-10-13 10:34:07] 2025-10-13 14:33:29,041 | INFO     | exeerrordiag: 
[2025-10-13 10:34:07] 2025-10-13 14:33:29,041 | INFO     | exitcode: 0
[2025-10-13 10:34:07] 2025-10-13 14:33:29,041 | INFO     | exitmsg: OK
[2025-10-13 10:34:07] 2025-10-13 14:33:29,041 | INFO     | cpuconsumptiontime: 41893 s
[2025-10-13 10:34:07] 2025-10-13 14:33:29,041 | INFO     | nevents: 400
[2025-10-13 10:34:07] 2025-10-13 14:33:29,041 | INFO     | neventsw: 0
[2025-10-13 10:34:07] 2025-10-13 14:33:29,041 | INFO     | pid: 3419194
[2025-10-13 10:34:07] 2025-10-13 14:33:29,041 | INFO     | pgrp: 3419194
[2025-10-13 10:34:07] 2025-10-13 14:33:29,041 | INFO     | corecount: 9
[2025-10-13 10:34:07] 2025-10-13 14:33:29,041 | INFO     | event service: False
[2025-10-13 10:34:07] 2025-10-13 14:33:29,041 | INFO     | sizes: {0: 2348029, 1: 2348714, 2: 2348742, 3: 2348941, 14: 2348941, 20: 2349231, 25: 2349387, 13158: 2379677, 13164: 2388675, 13168: 2388731, 13203: 2388925}
[2025-10-13 10:34:07] 2025-10-13 14:33:29,041 | INFO     | --------------------------------------------------
[2025-10-13 10:34:07] 2025-10-13 14:33:29,042 | INFO     | 
[2025-10-13 10:34:07] 2025-10-13 14:33:29,042 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-13 10:34:07] 2025-10-13 14:33:29,283 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 10:34:07] 2025-10-13 14:33:29,284 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 10:34:07] 2025-10-13 14:33:29,284 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 10:34:07] 2025-10-13 14:33:29,284 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 10:34:07] 2025-10-13 14:33:29,284 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 10:34:07] 2025-10-13 14:33:29,284 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 10:34:07] 2025-10-13 14:33:29,284 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 10:34:07] 2025-10-13 14:33:29,284 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 10:34:07] 2025-10-13 14:33:29,284 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 10:34:07] 2025-10-13 14:33:29,284 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 10:34:07] 2025-10-13 14:33:29,284 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 10:34:07] 2025-10-13 14:33:29,284 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 10:34:07] 2025-10-13 14:33:29,284 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 10:34:07] 2025-10-13 14:33:29,285 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 10:34:07] 2025-10-13 14:33:29,285 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 10:34:07] 2025-10-13 14:33:29,285 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 10:34:07] 2025-10-13 14:33:29,285 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 10:34:07] 2025-10-13 14:33:29,285 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 10:34:07] 2025-10-13 14:33:29,285 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 10:34:07] 2025-10-13 14:33:29,285 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 10:34:07] 2025-10-13 14:33:29,285 | INFO     | job 6840969227 has completed (purged errors)
[2025-10-13 10:34:07] 2025-10-13 14:33:29,285 | INFO     | overall cleanup function is called
[2025-10-13 10:34:07] 2025-10-13 14:33:29,857 | INFO     | PID=3410636 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 10:34:07] 2025-10-13 14:33:29,857 | INFO     | .. there are 27 such processes running
[2025-10-13 10:34:07] 2025-10-13 14:33:30,461 | INFO     | --- collectZombieJob: --- 10, [3419194]
[2025-10-13 10:34:07] 2025-10-13 14:33:30,461 | INFO     | zombie collector waiting for pid 3419194
[2025-10-13 10:34:07] 2025-10-13 14:33:30,461 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 10:34:07] 2025-10-13 14:33:30,461 | INFO     | collected zombie processes
[2025-10-13 10:34:07] 2025-10-13 14:33:30,462 | INFO     | will attempt to kill all subprocesses of pid=3419194
[2025-10-13 10:34:07] 2025-10-13 14:33:31,315 | INFO     | process IDs to be killed: [3419194] (in reverse order)
[2025-10-13 10:34:07] 2025-10-13 14:33:31,658 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 10:34:07] 2025-10-13 14:33:31,659 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 10:34:07] 2025-10-13 14:33:31,701 | INFO     | did not find any defunct processes belonging to 3419194
[2025-10-13 10:34:07] 2025-10-13 14:33:31,726 | INFO     | did not find any defunct processes belonging to 3419194
[2025-10-13 10:34:07] 2025-10-13 14:33:31,726 | INFO     | ready for new job
[2025-10-13 10:34:07] 2025-10-13 14:33:31,727 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 10:34:07] 2025-10-13 14:33:31,733 | INFO     | ***************************************
[2025-10-13 10:34:07] 2025-10-13 14:33:31,733 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 10:34:07] 2025-10-13 14:33:31,733 | INFO     | ***************************************
[2025-10-13 10:34:07] 2025-10-13 14:33:31,733 | INFO     | 
[2025-10-13 10:34:07] 2025-10-13 14:33:31,749 | INFO     | architecture information:
[2025-10-13 10:34:07] 2025-10-13 14:33:31,754 | INFO     | executing command: cat /etc/os-release
[2025-10-13 10:34:07] 2025-10-13 14:33:31,826 | INFO     | cat /etc/os-release:
[2025-10-13 10:34:07] NAME="CentOS Linux"
[2025-10-13 10:34:07] VERSION="7 (Core)"
[2025-10-13 10:34:07] ID="centos"
[2025-10-13 10:34:07] ID_LIKE="rhel fedora"
[2025-10-13 10:34:07] VERSION_ID="7"
[2025-10-13 10:34:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 10:34:07] ANSI_COLOR="0;31"
[2025-10-13 10:34:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 10:34:07] HOME_URL="https://www.centos.org/"
[2025-10-13 10:34:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 10:34:07] 
[2025-10-13 10:34:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 10:34:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 10:34:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 10:34:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 10:34:07] 
[2025-10-13 10:34:07] 2025-10-13 14:33:31,826 | INFO     | ***************************************
[2025-10-13 10:34:07] 2025-10-13 14:33:32,329 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-13 10:34:07] 2025-10-13 14:33:32,398 | INFO     | sufficient remaining disk space (76018614272 B)
[2025-10-13 10:34:07] 2025-10-13 14:33:32,398 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 10:34:07] 2025-10-13 14:33:32,399 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 10:34:07] 2025-10-13 14:33:32,399 | INFO     | update_server=False
[2025-10-13 10:34:07] 2025-10-13 14:33:32,399 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 10:34:07] 2025-10-13 14:33:32,400 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 10:34:07] 2025-10-13 14:33:33,124 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 10:34:07] 2025-10-13 14:33:33,128 | INFO     | all data control threads have been joined
[2025-10-13 10:34:07] 2025-10-13 14:33:33,197 | INFO     | all payload control threads have been joined
[2025-10-13 10:34:07] 2025-10-13 14:33:33,382 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:34:07] 2025-10-13 14:33:33,382 | INFO     | aborting loop
[2025-10-13 10:34:07] 2025-10-13 14:33:33,405 | INFO     | [job] retrieve thread has finished
[2025-10-13 10:34:07] 2025-10-13 14:33:33,802 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 10:34:07] 2025-10-13 14:33:33,905 | INFO     | [payload] validate_post thread has finished
[2025-10-13 10:34:07] 2025-10-13 14:33:33,987 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:34:07] 2025-10-13 14:33:34,122 | INFO     | all job control threads have been joined
[2025-10-13 10:34:07] 2025-10-13 14:33:34,138 | INFO     | [data] control thread has finished
[2025-10-13 10:34:07] 2025-10-13 14:33:34,211 | INFO     | [payload] control thread has finished
[2025-10-13 10:34:07] 2025-10-13 14:33:34,408 | INFO     | [job] job monitor thread has finished
[2025-10-13 10:34:07] 2025-10-13 14:33:34,612 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 10:34:07] 2025-10-13 14:33:34,612 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 10:34:07] 2025-10-13 14:33:34,737 | INFO     | [data] copytool_in thread has finished
[2025-10-13 10:34:07] 2025-10-13 14:33:34,801 | INFO     | [job] validate thread has finished
[2025-10-13 10:34:07] 2025-10-13 14:33:34,898 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 10:34:07] 2025-10-13 14:33:34,935 | INFO     | [payload] failed_post thread has finished
[2025-10-13 10:34:07] 2025-10-13 14:33:35,021 | INFO     | [job] queue monitor thread has finished
[2025-10-13 10:34:07] 2025-10-13 14:33:35,131 | INFO     | [job] control thread has finished
[2025-10-13 10:34:07] 2025-10-13 14:33:35,144 | INFO     | [data] copytool_out thread has finished
[2025-10-13 10:34:07] 2025-10-13 14:33:36,409 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 10:34:07] 2025-10-13 14:33:57,818 | INFO     | [monitor] cgroup control has ended
[2025-10-13 10:34:07] 2025-10-13 14:33:59,270 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139682146662208)>', '<ExcThread(monitor, started 139681505199872)>']
[2025-10-13 10:34:07] 2025-10-13 14:34:04,331 | INFO     | all workflow threads have been joined
[2025-10-13 10:34:07] 2025-10-13 14:34:04,331 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 10:34:07] 2025-10-13 14:34:04,333 | INFO     | traces error code: 0
[2025-10-13 10:34:07] 2025-10-13 14:34:04,333 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 10:34:07] 2025-10-13 14:34:04,788 | INFO     | PID=3410636 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 10:34:07] 2025-10-13 14:34:04,789 | INFO     | .. there are 27 such processes running
[2025-10-13 10:34:07] 2025-10-13 14:34:04,794 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 10:34:07] 2025-10-13 14:34:04,794 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 10:34:07] 2025-10-13 14:34:04,794 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 10:34:07] 2025-10-13 14:34:04,794 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 10:34:07] 2025-10-13 14:34:04,794 | CRITICAL | thread 'MainThread' is not alive
[2025-10-13 10:34:07] 2025-10-13 14:34:04,795 | INFO     | [monitor] control thread has ended
[2025-10-13 10:34:07] 2025-10-13 14:34:05,321 [wrapper] ==== pilot stdout END ====
[2025-10-13 10:34:07] 2025-10-13 14:34:05,336 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 10:34:07] 2025-10-13 14:34:05,359 [wrapper] pilotpid: 3410636
[2025-10-13 10:34:07] 2025-10-13 14:34:05,407 [wrapper] Pilot exit status: 0
[2025-10-13 10:34:07] 2025-10-13 14:34:05,562 [wrapper] pandaids: 6840969227
[2025-10-13 10:34:07] 2025-10-13 14:34:06,169 [wrapper] cleanup supervisor_pilot 4113356 3410637
[2025-10-13 10:34:07] 2025-10-13 14:34:06,195 [wrapper] Test setup, not cleaning
[2025-10-13 10:34:07] 2025-10-13 14:34:06,238 [wrapper] apfmon messages muted
[2025-10-13 10:34:07] 2025-10-13 14:34:06,285 [wrapper] ==== wrapper stdout END ====
[2025-10-13 10:34:07] 2025-10-13 14:34:06,326 [wrapper] ==== wrapper stderr END ====
[2025-10-13 10:34:07]  *** Error codes and diagnostics ***
[2025-10-13 10:34:07]     "exeErrorCode": 0,
[2025-10-13 10:34:07]     "exeErrorDiag": "",
[2025-10-13 10:34:07]     "pilotErrorCode": 0,
[2025-10-13 10:34:07]     "pilotErrorDiag": "",
[2025-10-13 10:34:07]  *** Listing of results directory ***
[2025-10-13 10:34:07] total 414020
[2025-10-13 10:34:07] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 19:11 pilot3.tar.gz
[2025-10-13 10:34:07] -rwx------. 1 boincer umatlas     36292 Oct 12 19:30 runpilot2-wrapper.sh
[2025-10-13 10:34:07] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 19:30 queuedata.json
[2025-10-13 10:34:07] -rw-r--r--. 1 boincer umatlas       100 Oct 13 06:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 10:34:07] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 06:51 run_atlas
[2025-10-13 10:34:07] -rw-r--r--. 1 boincer umatlas       105 Oct 13 06:51 job.xml
[2025-10-13 10:34:07] -rw-r--r--. 2 boincer umatlas 222703809 Oct 13 06:51 EVNT.46676267._004658.pool.root.1
[2025-10-13 10:34:07] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 06:51 shared
[2025-10-13 10:34:07] -rw-r--r--. 2 boincer umatlas    569678 Oct 13 06:51 input.tar.gz
[2025-10-13 10:34:07] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 06:51 start_atlas.sh
[2025-10-13 10:34:07] -rw-r--r--. 1 boincer umatlas         0 Oct 13 06:51 boinc_lockfile
[2025-10-13 10:34:07] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 06:51 pandaJob.out
[2025-10-13 10:34:07] -rw-------. 1 boincer umatlas    972497 Oct 13 06:52 agis_schedconf.cvmfs.json
[2025-10-13 10:34:07] drwx------. 5 boincer umatlas      4096 Oct 13 06:52 pilot3
[2025-10-13 10:34:07] -rw-r--r--. 1 boincer umatlas      6857 Oct 13 10:29 init_data.xml
[2025-10-13 10:34:07] -rw-------. 1 boincer umatlas 193011673 Oct 13 10:31 HITS.46676269._092228.pool.root.1
[2025-10-13 10:34:07] -rw-r--r--. 1 boincer umatlas       530 Oct 13 10:31 boinc_task_state.xml
[2025-10-13 10:34:07] -rw-------. 1 boincer umatlas      1043 Oct 13 10:32 memory_monitor_summary.json
[2025-10-13 10:34:07] -rw-------. 1 boincer umatlas   1560580 Oct 13 10:32 agis_ddmendpoints.agis.ALL.json
[2025-10-13 10:34:07] -rw-------. 1 boincer umatlas    455918 Oct 13 10:32 log.46676269._092228.job.log.tgz.1
[2025-10-13 10:34:07] -rw-------. 1 boincer umatlas      7825 Oct 13 10:33 heartbeat.json
[2025-10-13 10:34:07] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 10:33 boinc_mmap_file
[2025-10-13 10:34:07] -rw-r--r--. 1 boincer umatlas        28 Oct 13 10:33 wrapper_checkpoint.txt
[2025-10-13 10:34:07] -rw-------. 1 boincer umatlas        95 Oct 13 10:34 pilot_heartbeat.json
[2025-10-13 10:34:07] -rw-------. 1 boincer umatlas       893 Oct 13 10:34 pilotlog.txt
[2025-10-13 10:34:07] -rw-------. 1 boincer umatlas   1715061 Oct 13 10:34 log.46676269._092228.job.log.1
[2025-10-13 10:34:07] -rw-------. 1 boincer umatlas       357 Oct 13 10:34 output.list
[2025-10-13 10:34:07] -rw-r--r--. 1 boincer umatlas       620 Oct 13 10:34 runtime_log
[2025-10-13 10:34:07] -rw-------. 1 boincer umatlas   2191360 Oct 13 10:34 result.tar.gz
[2025-10-13 10:34:07] -rw-r--r--. 1 boincer umatlas      8704 Oct 13 10:34 runtime_log.err
[2025-10-13 10:34:07] -rw-------. 1 boincer umatlas       656 Oct 13 10:34 O4eNDmrhKS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmTHVMDmnrHown.diag
[2025-10-13 10:34:07] -rw-r--r--. 1 boincer umatlas     20886 Oct 13 10:34 stderr.txt
[2025-10-13 10:34:07] HITS file was successfully produced:
[2025-10-13 10:34:07] -rw-------. 1 boincer umatlas 193011673 Oct 13 10:31 shared/HITS.pool.root.1
[2025-10-13 10:34:07]  *** Contents of shared directory: ***
[2025-10-13 10:34:07] total 408700
[2025-10-13 10:34:07] -rw-r--r--. 2 boincer umatlas 222703809 Oct 13 06:51 ATLAS.root_0
[2025-10-13 10:34:07] -rw-r--r--. 2 boincer umatlas    569678 Oct 13 06:51 input.tar.gz
[2025-10-13 10:34:07] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 06:51 start_atlas.sh
[2025-10-13 10:34:07] -rw-------. 1 boincer umatlas 193011673 Oct 13 10:31 HITS.pool.root.1
[2025-10-13 10:34:07] -rw-------. 1 boincer umatlas   2191360 Oct 13 10:34 result.tar.gz
10:34:08 (3405967): run_atlas exited; CPU time 42273.010614
10:34:08 (3405967): called boinc_finish(0)

</stderr_txt>
]]>

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