Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:25 (13277): wrapper (7.7.26015): starting
00:05:25 (13277): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 00:05:25] Arguments: --nthreads 12
[2025-10-13 00:05:25] Threads: 12
[2025-10-13 00:05:25] Checking for CVMFS
[2025-10-13 00:05:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:05:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:05:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:05:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:05:25] 2.11.2.0 2933 223819 99968 151647 3 57 16039803 20275200 1 130560 2 108293135 99.983 13117620 12481 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 00:05:25] CVMFS is ok
[2025-10-13 00:05:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:05:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:05:25] Further information can be found at the LHC@home message board.
[2025-10-13 00:05:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:05:25] Checking for apptainer binary...
[2025-10-13 00:05:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:05:26] Running /usr/bin/apptainer --version
[2025-10-13 00:05:26] apptainer version 1.3.2-1.el7
[2025-10-13 00:05:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:05:27] c-205-15.aglt2.org
[2025-10-13 00:05:27] apptainer works
[2025-10-13 00:05:27] Set ATHENA_PROC_NUMBER=12
[2025-10-13 00:05:27] Set ATHENA_CORE_NUMBER=12
[2025-10-13 00:05:27] Starting ATLAS job with PandaID=6840969794
[2025-10-13 00:05:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:19:09]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:19:09]  replicas=None
[2025-10-13 01:19:09]  scope=mc23_13p6TeV
[2025-10-13 01:19:09]  status=None
[2025-10-13 01:19:09]  status_code=0
[2025-10-13 01:19:09]  storage_token=
[2025-10-13 01:19:09]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840969794/log.46676269._092478.job.log.tgz.1
[2025-10-13 01:19:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/ee/log.46676269._092478.job.log.tgz.1
[2025-10-13 01:19:09]  workdir=None
[2025-10-13 01:19:09] ]
[2025-10-13 01:19:09] 2025-10-13 05:18:29,131 | INFO     | transferring file log.46676269._092478.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840969794/log.46676269._092478.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 01:19:09] 2025-10-13 05:18:29,131 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840969794/log.46676269._092478.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._092478.job
[2025-10-13 01:19:09] 2025-10-13 05:18:29,154 | INFO     | adding to output.list: log.46676269._092478.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/ee/log.46676269._092478.job.log.tg
[2025-10-13 01:19:09] 2025-10-13 05:18:29,155 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 01:19:09] 2025-10-13 05:18:29,155 | INFO     | summary of transferred files:
[2025-10-13 01:19:09] 2025-10-13 05:18:29,155 | INFO     |  -- lfn=log.46676269._092478.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 01:19:09] 2025-10-13 05:18:29,156 | INFO     | stage-out finished correctly
[2025-10-13 01:19:09] 2025-10-13 05:18:30,132 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 01:19:09] 2025-10-13 05:18:30,245 | INFO     | time since job start (4368s) is within the limit (172800.0s)
[2025-10-13 01:19:09] 2025-10-13 05:18:32,251 | INFO     | time since job start (4370s) is within the limit (172800.0s)
[2025-10-13 01:19:09] 2025-10-13 05:18:32,302 | INFO     | job 6840969794 has state=finished
[2025-10-13 01:19:09] 2025-10-13 05:18:32,302 | INFO     | preparing for final server update for job 6840969794 in state='finished'
[2025-10-13 01:19:09] 2025-10-13 05:18:32,303 | INFO     | this job has now completed (state=finished)
[2025-10-13 01:19:09] 2025-10-13 05:18:32,303 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 01:19:09] 2025-10-13 05:18:32,303 | INFO     | log transfer has been attempted: DONE
[2025-10-13 01:19:09] 2025-10-13 05:18:32,303 | INFO     | job 6840969794 has finished - writing final server update
[2025-10-13 01:19:09] 2025-10-13 05:18:32,304 | INFO     | total number of processed events: 400 (read)
[2025-10-13 01:19:09] 2025-10-13 05:18:32,305 | INFO     | executing command: lscpu
[2025-10-13 01:19:09] 2025-10-13 05:18:32,328 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 01:19:09] 2025-10-13 05:18:32,357 | WARNING  | process 23466 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 01:19:09] 2025-10-13 05:18:32,357 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840969794/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:19:09] 2025-10-13 05:18:32,449 | INFO     | number of running child processes to parent process 23466: 1
[2025-10-13 01:19:09] 2025-10-13 05:18:32,449 | INFO     | maximum number of monitored processes: 6
[2025-10-13 01:19:09] 2025-10-13 05:18:33,374 | INFO     | PID=16952 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 01:19:09] 2025-10-13 05:18:34,374 | INFO     | time since job start (4372s) is within the limit (172800.0s)
[2025-10-13 01:19:09] 2025-10-13 05:18:34,952 | INFO     | monitor loop #325: job 0:6840969794 is in state 'finished'
[2025-10-13 01:19:09] 2025-10-13 05:18:34,952 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:19:09] 2025-10-13 05:18:36,379 | INFO     | time since job start (4374s) is within the limit (172800.0s)
[2025-10-13 01:19:09] 2025-10-13 05:18:37,277 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 01:19:09] 2025-10-13 05:18:37,281 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-13 01:19:09] 2025-10-13 05:18:37,284 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840969794/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:19:09] 2025-10-13 05:18:37,285 | INFO     | extracted standard info from prmon json
[2025-10-13 01:19:09] 2025-10-13 05:18:37,285 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 01:19:09] 2025-10-13 05:18:37,285 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 01:19:09] 2025-10-13 05:18:37,285 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 01:19:09] 2025-10-13 05:18:37,285 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 01:19:09] 2025-10-13 05:18:37,287 | INFO     | fitting pss+swap vs Time
[2025-10-13 01:19:09] 2025-10-13 05:18:37,287 | INFO     | sum of square deviations: 85136480.0
[2025-10-13 01:19:09] 2025-10-13 05:18:37,287 | INFO     | sum of deviations: 210483366.9999999
[2025-10-13 01:19:09] 2025-10-13 05:18:37,287 | INFO     | mean x: 1760330627.0
[2025-10-13 01:19:09] 2025-10-13 05:18:37,287 | INFO     | mean y: 2678067.123076923
[2025-10-13 01:19:09] 2025-10-13 05:18:37,288 | INFO     | -- intersect: -4349396594.692644
[2025-10-13 01:19:09] 2025-10-13 05:18:37,288 | INFO     | intersect: -4349396594.692644
[2025-10-13 01:19:09] 2025-10-13 05:18:37,288 | INFO     | chi2: 0.014458837614336946
[2025-10-13 01:19:09] 2025-10-13 05:18:37,288 | INFO     | -- intersect: -4349396594.692644
[2025-10-13 01:19:09] 2025-10-13 05:18:37,288 | INFO     | current memory leak: 2.47 B/s (using 65 data points, chi2=0.01)
[2025-10-13 01:19:09] 2025-10-13 05:18:37,288 | INFO     | could have reported an average CPU frequency of 2060 MHz (6 samples)
[2025-10-13 01:19:09] 2025-10-13 05:18:37,289 | INFO     | ..............................
[2025-10-13 01:19:09] 2025-10-13 05:18:37,289 | INFO     | . Timing measurements:
[2025-10-13 01:19:09] 2025-10-13 05:18:37,289 | INFO     | . get job = 0 s
[2025-10-13 01:19:09] 2025-10-13 05:18:37,289 | INFO     | . initial setup = 2 s
[2025-10-13 01:19:09] 2025-10-13 05:18:37,289 | INFO     | . payload setup = 6 s
[2025-10-13 01:19:09] 2025-10-13 05:18:37,289 | INFO     | . stage-in = 0 s
[2025-10-13 01:19:09] 2025-10-13 05:18:37,289 | INFO     | . payload execution = 4339 s
[2025-10-13 01:19:09] 2025-10-13 05:18:37,289 | INFO     | . stage-out = 0 s
[2025-10-13 01:19:09] 2025-10-13 05:18:37,289 | INFO     | . log creation = 0 s
[2025-10-13 01:19:09] 2025-10-13 05:18:37,289 | INFO     | ..............................
[2025-10-13 01:19:09] 2025-10-13 05:18:37,546 | INFO     | 
[2025-10-13 01:19:09] 2025-10-13 05:18:37,546 | INFO     | job summary report
[2025-10-13 01:19:09] 2025-10-13 05:18:37,546 | INFO     | --------------------------------------------------
[2025-10-13 01:19:09] 2025-10-13 05:18:37,546 | INFO     | PanDA job id: 6840969794
[2025-10-13 01:19:09] 2025-10-13 05:18:37,546 | INFO     | task id: 46676269
[2025-10-13 01:19:09] 2025-10-13 05:18:37,546 | INFO     | errors: (none)
[2025-10-13 01:19:09] 2025-10-13 05:18:37,547 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 01:19:09] 2025-10-13 05:18:37,547 | INFO     | pilot state: finished 
[2025-10-13 01:19:09] 2025-10-13 05:18:37,547 | INFO     | transexitcode: 0
[2025-10-13 01:19:09] 2025-10-13 05:18:37,547 | INFO     | exeerrorcode: 0
[2025-10-13 01:19:09] 2025-10-13 05:18:37,547 | INFO     | exeerrordiag: 
[2025-10-13 01:19:09] 2025-10-13 05:18:37,547 | INFO     | exitcode: 0
[2025-10-13 01:19:09] 2025-10-13 05:18:37,548 | INFO     | exitmsg: OK
[2025-10-13 01:19:09] 2025-10-13 05:18:37,548 | INFO     | cpuconsumptiontime: 46510 s
[2025-10-13 01:19:09] 2025-10-13 05:18:37,548 | INFO     | nevents: 400
[2025-10-13 01:19:09] 2025-10-13 05:18:37,548 | INFO     | neventsw: 0
[2025-10-13 01:19:09] 2025-10-13 05:18:37,548 | INFO     | pid: 23466
[2025-10-13 01:19:09] 2025-10-13 05:18:37,548 | INFO     | pgrp: 23466
[2025-10-13 01:19:09] 2025-10-13 05:18:37,549 | INFO     | corecount: 12
[2025-10-13 01:19:09] 2025-10-13 05:18:37,549 | INFO     | event service: False
[2025-10-13 01:19:09] 2025-10-13 05:18:37,549 | INFO     | sizes: {0: 2348630, 1: 2348885, 6: 2349147, 12: 2349175, 4350: 2375252, 4351: 2384250, 4352: 2384434, 4359: 2384628}
[2025-10-13 01:19:09] 2025-10-13 05:18:37,549 | INFO     | --------------------------------------------------
[2025-10-13 01:19:09] 2025-10-13 05:18:37,549 | INFO     | 
[2025-10-13 01:19:09] 2025-10-13 05:18:37,549 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 01:19:09] 2025-10-13 05:18:37,575 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:19:09] 2025-10-13 05:18:37,575 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:19:09] 2025-10-13 05:18:37,575 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:19:09] 2025-10-13 05:18:37,575 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:19:09] 2025-10-13 05:18:37,575 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:19:09] 2025-10-13 05:18:37,576 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:19:09] 2025-10-13 05:18:37,576 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:19:09] 2025-10-13 05:18:37,576 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:19:09] 2025-10-13 05:18:37,576 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:19:09] 2025-10-13 05:18:37,576 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:19:09] 2025-10-13 05:18:37,576 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:19:09] 2025-10-13 05:18:37,577 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:19:09] 2025-10-13 05:18:37,577 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:19:09] 2025-10-13 05:18:37,577 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:19:09] 2025-10-13 05:18:37,577 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:19:09] 2025-10-13 05:18:37,577 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:19:09] 2025-10-13 05:18:37,578 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:19:09] 2025-10-13 05:18:37,578 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:19:09] 2025-10-13 05:18:37,578 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:19:09] 2025-10-13 05:18:37,578 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:19:09] 2025-10-13 05:18:37,578 | INFO     | job 6840969794 has completed (purged errors)
[2025-10-13 01:19:09] 2025-10-13 05:18:37,579 | INFO     | overall cleanup function is called
[2025-10-13 01:19:09] 2025-10-13 05:18:38,585 | INFO     | --- collectZombieJob: --- 10, [23466]
[2025-10-13 01:19:09] 2025-10-13 05:18:38,585 | INFO     | zombie collector waiting for pid 23466
[2025-10-13 01:19:09] 2025-10-13 05:18:38,585 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:19:09] 2025-10-13 05:18:38,585 | INFO     | collected zombie processes
[2025-10-13 01:19:09] 2025-10-13 05:18:38,585 | INFO     | will attempt to kill all subprocesses of pid=23466
[2025-10-13 01:19:09] 2025-10-13 05:18:38,680 | INFO     | process IDs to be killed: [23466] (in reverse order)
[2025-10-13 01:19:09] 2025-10-13 05:18:38,733 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:19:09] 2025-10-13 05:18:38,733 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:19:09] 2025-10-13 05:18:38,736 | INFO     | did not find any defunct processes belonging to 23466
[2025-10-13 01:19:09] 2025-10-13 05:18:38,739 | INFO     | did not find any defunct processes belonging to 23466
[2025-10-13 01:19:09] 2025-10-13 05:18:38,740 | INFO     | ready for new job
[2025-10-13 01:19:09] 2025-10-13 05:18:38,740 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:19:09] 2025-10-13 05:18:38,741 | INFO     | ***************************************
[2025-10-13 01:19:09] 2025-10-13 05:18:38,741 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:19:09] 2025-10-13 05:18:38,742 | INFO     | ***************************************
[2025-10-13 01:19:09] 2025-10-13 05:18:38,742 | INFO     | 
[2025-10-13 01:19:09] 2025-10-13 05:18:38,742 | INFO     | architecture information:
[2025-10-13 01:19:09] 2025-10-13 05:18:38,743 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:19:09] 2025-10-13 05:18:38,758 | INFO     | cat /etc/os-release:
[2025-10-13 01:19:09] NAME="CentOS Linux"
[2025-10-13 01:19:09] VERSION="7 (Core)"
[2025-10-13 01:19:09] ID="centos"
[2025-10-13 01:19:09] ID_LIKE="rhel fedora"
[2025-10-13 01:19:09] VERSION_ID="7"
[2025-10-13 01:19:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:19:09] ANSI_COLOR="0;31"
[2025-10-13 01:19:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:19:09] HOME_URL="https://www.centos.org/"
[2025-10-13 01:19:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:19:09] 
[2025-10-13 01:19:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:19:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:19:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:19:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:19:09] 
[2025-10-13 01:19:09] 2025-10-13 05:18:38,758 | INFO     | ***************************************
[2025-10-13 01:19:09] 2025-10-13 05:18:39,261 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 01:19:09] 2025-10-13 05:18:39,277 | INFO     | sufficient remaining disk space (29369565184 B)
[2025-10-13 01:19:09] 2025-10-13 05:18:39,278 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:19:09] 2025-10-13 05:18:39,278 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:19:09] 2025-10-13 05:18:39,278 | INFO     | update_server=False
[2025-10-13 01:19:09] 2025-10-13 05:18:39,278 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:19:09] 2025-10-13 05:18:39,279 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:19:09] 2025-10-13 05:18:39,279 | INFO     | aborting loop
[2025-10-13 01:19:09] 2025-10-13 05:18:39,279 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:19:09] 2025-10-13 05:18:39,365 | INFO     | all job control threads have been joined
[2025-10-13 01:19:09] 2025-10-13 05:18:39,754 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:19:09] 2025-10-13 05:18:39,984 | INFO     | all data control threads have been joined
[2025-10-13 01:19:09] 2025-10-13 05:18:40,280 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:19:09] 2025-10-13 05:18:40,285 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:19:09] 2025-10-13 05:18:40,285 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:19:09] 2025-10-13 05:18:40,370 | INFO     | [job] control thread has finished
[2025-10-13 01:19:09] 2025-10-13 05:18:40,415 | INFO     | [job] validate thread has finished
[2025-10-13 01:19:09] 2025-10-13 05:18:40,419 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:19:09] 2025-10-13 05:18:40,616 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:19:09] 2025-10-13 05:18:40,637 | INFO     | all payload control threads have been joined
[2025-10-13 01:19:09] 2025-10-13 05:18:40,722 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:19:09] 2025-10-13 05:18:40,922 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:19:09] 2025-10-13 05:18:40,986 | INFO     | [data] control thread has finished
[2025-10-13 01:19:09] 2025-10-13 05:18:41,079 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:19:09] 2025-10-13 05:18:41,110 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:19:09] 2025-10-13 05:18:41,333 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:19:09] 2025-10-13 05:18:41,642 | INFO     | [payload] control thread has finished
[2025-10-13 01:19:09] 2025-10-13 05:18:41,740 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:19:09] 2025-10-13 05:18:41,759 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:19:09] 2025-10-13 05:18:44,728 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:19:09] 2025-10-13 05:18:48,584 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:19:09] 2025-10-13 05:18:49,633 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140641153128256)>', '<ExcThread(monitor, started 140640574760704)>']
[2025-10-13 01:19:09] 2025-10-13 05:18:54,659 | INFO     | all workflow threads have been joined
[2025-10-13 01:19:09] 2025-10-13 05:18:54,659 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:19:09] 2025-10-13 05:18:54,659 | INFO     | traces error code: 0
[2025-10-13 01:19:09] 2025-10-13 05:18:54,660 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:19:09] 2025-10-13 05:19:09,584 | INFO     | PID=16952 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 01:19:09] 2025-10-13 05:19:09,585 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:19:09] 2025-10-13 05:19:09,585 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:19:09] 2025-10-13 05:19:09,585 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:19:09] 2025-10-13 05:19:09,585 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:19:09] 2025-10-13 05:19:09,585 | INFO     | [monitor] control thread has ended
[2025-10-13 01:19:09] 2025-10-13 05:19:09,675 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:19:09] 2025-10-13 05:19:09,678 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:19:09] 2025-10-13 05:19:09,681 [wrapper] pilotpid: 16952
[2025-10-13 01:19:09] 2025-10-13 05:19:09,684 [wrapper] Pilot exit status: 0
[2025-10-13 01:19:09] 2025-10-13 05:19:09,699 [wrapper] pandaids: 6840969794
[2025-10-13 01:19:09] 2025-10-13 05:19:09,736 [wrapper] cleanup supervisor_pilot  3960 16953
[2025-10-13 01:19:09] 2025-10-13 05:19:09,740 [wrapper] Test setup, not cleaning
[2025-10-13 01:19:09] 2025-10-13 05:19:09,744 [wrapper] apfmon messages muted
[2025-10-13 01:19:09] 2025-10-13 05:19:09,748 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:19:09] 2025-10-13 05:19:09,751 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:19:09]  *** Error codes and diagnostics ***
[2025-10-13 01:19:09]     "exeErrorCode": 0,
[2025-10-13 01:19:09]     "exeErrorDiag": "",
[2025-10-13 01:19:09]     "pilotErrorCode": 0,
[2025-10-13 01:19:09]     "pilotErrorDiag": "",
[2025-10-13 01:19:09]  *** Listing of results directory ***
[2025-10-13 01:19:09] total 408268
[2025-10-13 01:19:09] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 19:11 pilot3.tar.gz
[2025-10-13 01:19:09] -rwx------ 1 boincer umatlas     36292 Oct 12 19:49 runpilot2-wrapper.sh
[2025-10-13 01:19:09] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 19:49 queuedata.json
[2025-10-13 01:19:09] -rw-r--r-- 1 boincer umatlas       100 Oct 13 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:19:09] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 00:05 run_atlas
[2025-10-13 01:19:09] -rw-r--r-- 1 boincer umatlas       105 Oct 13 00:05 job.xml
[2025-10-13 01:19:09] -rw-r--r-- 2 boincer umatlas 219181933 Oct 13 00:05 EVNT.46676267._004668.pool.root.1
[2025-10-13 01:19:09] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 00:05 start_atlas.sh
[2025-10-13 01:19:09] drwxrwx--x 2 boincer umatlas      4096 Oct 13 00:05 shared
[2025-10-13 01:19:09] -rw-r--r-- 2 boincer umatlas    569676 Oct 13 00:05 input.tar.gz
[2025-10-13 01:19:09] -rw-r--r-- 1 boincer umatlas         0 Oct 13 00:05 boinc_lockfile
[2025-10-13 01:19:09] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 00:05 pandaJob.out
[2025-10-13 01:19:09] -rw------- 1 boincer umatlas    974373 Oct 13 00:05 agis_schedconf.cvmfs.json
[2025-10-13 01:19:09] -rw------- 1 boincer umatlas   1560580 Oct 13 00:05 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:19:09] drwx------ 5 boincer umatlas      4096 Oct 13 00:05 pilot3
[2025-10-13 01:19:09] -rw-r--r-- 1 boincer umatlas      5953 Oct 13 01:13 init_data.xml
[2025-10-13 01:19:09] -rw------- 1 boincer umatlas 192955355 Oct 13 01:17 HITS.46676269._092478.pool.root.1
[2025-10-13 01:19:09] -rw-r--r-- 1 boincer umatlas       529 Oct 13 01:18 boinc_task_state.xml
[2025-10-13 01:19:09] -rw------- 1 boincer umatlas      1051 Oct 13 01:18 memory_monitor_summary.json
[2025-10-13 01:19:09] -rw------- 1 boincer umatlas    379967 Oct 13 01:18 log.46676269._092478.job.log.tgz.1
[2025-10-13 01:19:09] -rw------- 1 boincer umatlas      7853 Oct 13 01:18 heartbeat.json
[2025-10-13 01:19:09] -rw-r--r-- 1 boincer umatlas        27 Oct 13 01:19 wrapper_checkpoint.txt
[2025-10-13 01:19:09] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 01:19 boinc_mmap_file
[2025-10-13 01:19:09] -rw------- 1 boincer umatlas       745 Oct 13 01:19 pilotlog.txt
[2025-10-13 01:19:09] -rw------- 1 boincer umatlas        95 Oct 13 01:19 pilot_heartbeat.json
[2025-10-13 01:19:09] -rw------- 1 boincer umatlas    636097 Oct 13 01:19 log.46676269._092478.job.log.1
[2025-10-13 01:19:09] -rw------- 1 boincer umatlas       357 Oct 13 01:19 output.list
[2025-10-13 01:19:09] -rw-r--r-- 1 boincer umatlas       620 Oct 13 01:19 runtime_log
[2025-10-13 01:19:09] -rw------- 1 boincer umatlas   1034240 Oct 13 01:19 result.tar.gz
[2025-10-13 01:19:09] -rw------- 1 boincer umatlas       659 Oct 13 01:19 xcxLDmA0KS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmHJVMDmOJnCYm.diag
[2025-10-13 01:19:09] -rw-r--r-- 1 boincer umatlas      8705 Oct 13 01:19 runtime_log.err
[2025-10-13 01:19:09] -rw-r--r-- 1 boincer umatlas     21951 Oct 13 01:19 stderr.txt
[2025-10-13 01:19:09] HITS file was successfully produced:
[2025-10-13 01:19:09] -rw------- 1 boincer umatlas 192955355 Oct 13 01:17 shared/HITS.pool.root.1
[2025-10-13 01:19:09]  *** Contents of shared directory: ***
[2025-10-13 01:19:09] total 404076
[2025-10-13 01:19:09] -rw-r--r-- 2 boincer umatlas 219181933 Oct 13 00:05 ATLAS.root_0
[2025-10-13 01:19:09] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 00:05 start_atlas.sh
[2025-10-13 01:19:09] -rw-r--r-- 2 boincer umatlas    569676 Oct 13 00:05 input.tar.gz
[2025-10-13 01:19:09] -rw------- 1 boincer umatlas 192955355 Oct 13 01:17 HITS.pool.root.1
[2025-10-13 01:19:09] -rw------- 1 boincer umatlas   1034240 Oct 13 01:19 result.tar.gz
01:19:11 (13277): run_atlas exited; CPU time 46486.300756
01:19:11 (13277): called boinc_finish(0)

</stderr_txt>
]]>

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