Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:12 (888720): wrapper (7.7.26015): starting
00:02:12 (888720): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 00:02:12] Arguments: --nthreads 12
[2025-10-13 00:02:12] Threads: 12
[2025-10-13 00:02:12] Checking for CVMFS
[2025-10-13 00:02:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:02:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:02:13] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:02:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:02:14] 2.13.2.0 2059728 130177 421008 151647 0 605 25171076 32935936 45853 16776704 0 306150702 99.637 288135073 20241 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 00:02:14] CVMFS is ok
[2025-10-13 00:02:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:02:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:02:14] Further information can be found at the LHC@home message board.
[2025-10-13 00:02:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:02:14] Checking for apptainer binary...
[2025-10-13 00:02:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:02:14] Running /usr/bin/apptainer --version
[2025-10-13 00:02:14] apptainer version 1.4.3-1.el9
[2025-10-13 00:02:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:02:15] c6-12-29-1.aglt2.org
[2025-10-13 00:02:15] apptainer works
[2025-10-13 00:02:15] Set ATHENA_PROC_NUMBER=12
[2025-10-13 00:02:15] Set ATHENA_CORE_NUMBER=12
[2025-10-13 00:02:15] Starting ATLAS job with PandaID=6840750155
[2025-10-13 00:02:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:35:05]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:35:05] 2025-10-13 09:33:37,761 | INFO     | sum of deviations: 208794913144.79404
[2025-10-13 05:35:05] 2025-10-13 09:33:37,761 | INFO     | mean x: 1760338013.1107595
[2025-10-13 05:35:05] 2025-10-13 09:33:37,761 | INFO     | mean y: 2217154.148734177
[2025-10-13 05:35:05] 2025-10-13 09:33:37,761 | INFO     | -- intersect: -37562580728.339966
[2025-10-13 05:35:05] 2025-10-13 09:33:37,762 | INFO     | intersect: -37562580728.339966
[2025-10-13 05:35:05] 2025-10-13 09:33:37,762 | INFO     | chi2: 5.762527464254083
[2025-10-13 05:35:05] 2025-10-13 09:33:37,762 | INFO     | current chi2=5.762527464254083 (change=10.48606397947472 %)
[2025-10-13 05:35:05] 2025-10-13 09:33:37,762 | INFO     | right removable region: 315
[2025-10-13 05:35:05] 2025-10-13 09:33:37,763 | INFO     | sum of square deviations: 9784317956.341774
[2025-10-13 05:35:05] 2025-10-13 09:33:37,771 | INFO     | sum of deviations: 105189185618.93039
[2025-10-13 05:35:05] 2025-10-13 09:33:37,772 | INFO     | mean x: 1760338318.107595
[2025-10-13 05:35:05] 2025-10-13 09:33:37,772 | INFO     | mean y: 2240319.7373417723
[2025-10-13 05:35:05] 2025-10-13 09:33:37,772 | INFO     | -- intersect: -18922794099.807175
[2025-10-13 05:35:05] 2025-10-13 09:33:37,772 | INFO     | intersect: -18922794099.807175
[2025-10-13 05:35:05] 2025-10-13 09:33:37,773 | INFO     | chi2: 2.897139197167039
[2025-10-13 05:35:05] 2025-10-13 09:33:37,773 | INFO     | current chi2=2.897139197167039 (change=54.99642572699908 %)
[2025-10-13 05:35:05] 2025-10-13 09:33:37,773 | INFO     | sum of square deviations: 9327115939.466293
[2025-10-13 05:35:05] 2025-10-13 09:33:37,780 | INFO     | sum of deviations: 52306088385.03212
[2025-10-13 05:35:05] 2025-10-13 09:33:37,800 | INFO     | mean x: 1760338470.6173635
[2025-10-13 05:35:05] 2025-10-13 09:33:37,801 | INFO     | mean y: 2257947.697749196
[2025-10-13 05:35:05] 2025-10-13 09:33:37,801 | INFO     | -- intersect: -9869648891.379538
[2025-10-13 05:35:05] 2025-10-13 09:33:37,801 | INFO     | intersect: -9869648891.379538
[2025-10-13 05:35:05] 2025-10-13 09:33:37,801 | INFO     | chi2: 1.6993363736558385
[2025-10-13 05:35:05] 2025-10-13 09:33:37,802 | INFO     | current chi2=1.6993363736558385 (change=41.34433114855058 %)
[2025-10-13 05:35:05] 2025-10-13 09:33:37,802 | INFO     | sum of square deviations: 8884398159.281086
[2025-10-13 05:35:05] 2025-10-13 09:33:37,809 | INFO     | sum of deviations: 13456509288.712406
[2025-10-13 05:35:05] 2025-10-13 09:33:37,810 | INFO     | mean x: 1760338623.124183
[2025-10-13 05:35:05] 2025-10-13 09:33:37,810 | INFO     | mean y: 2271304.3496732027
[2025-10-13 05:35:05] 2025-10-13 09:33:37,810 | INFO     | -- intersect: -2663977169.51055
[2025-10-13 05:35:05] 2025-10-13 09:33:37,810 | INFO     | intersect: -2663977169.51055
[2025-10-13 05:35:05] 2025-10-13 09:33:37,811 | INFO     | chi2: 1.0252883800897798
[2025-10-13 05:35:05] 2025-10-13 09:33:37,811 | INFO     | current chi2=1.0252883800897798 (change=39.66536608146372 %)
[2025-10-13 05:35:05] 2025-10-13 09:33:37,812 | INFO     | sum of square deviations: 8455932114.325567
[2025-10-13 05:35:05] 2025-10-13 09:33:37,819 | INFO     | sum of deviations: -9244611429.83721
[2025-10-13 05:35:05] 2025-10-13 09:33:37,819 | INFO     | mean x: 1760338775.627907
[2025-10-13 05:35:05] 2025-10-13 09:33:37,820 | INFO     | mean y: 2279374.38538206
[2025-10-13 05:35:05] 2025-10-13 09:33:37,820 | INFO     | -- intersect: 1926803808.3014827
[2025-10-13 05:35:05] 2025-10-13 09:33:37,820 | INFO     | intersect: 1926803808.3014827
[2025-10-13 05:35:05] 2025-10-13 09:33:37,825 | INFO     | chi2: 0.7923317873220543
[2025-10-13 05:35:05] 2025-10-13 09:33:37,825 | INFO     | current chi2=0.7923317873220543 (change=22.721079970430033 %)
[2025-10-13 05:35:05] 2025-10-13 09:33:37,825 | INFO     | left removable region: 40
[2025-10-13 05:35:05] 2025-10-13 09:33:37,826 | INFO     | sum of square deviations: 6448510902.669092
[2025-10-13 05:35:05] 2025-10-13 09:33:37,828 | INFO     | sum of deviations: -1600177950.621818
[2025-10-13 05:35:05] 2025-10-13 09:33:37,829 | INFO     | mean x: 1760339202.621818
[2025-10-13 05:35:05] 2025-10-13 09:33:37,829 | INFO     | mean y: 2290006.0036363634
[2025-10-13 05:35:05] 2025-10-13 09:33:37,829 | INFO     | -- intersect: 439112711.30211174
[2025-10-13 05:35:05] 2025-10-13 09:33:37,829 | INFO     | intersect: 439112711.30211174
[2025-10-13 05:35:05] 2025-10-13 09:33:37,834 | INFO     | chi2: 0.077874984756152
[2025-10-13 05:35:05] 2025-10-13 09:33:37,834 | INFO     | -- intersect: 439112711.30211174
[2025-10-13 05:35:05] 2025-10-13 09:33:37,835 | INFO     | current memory leak: -0.25 B/s (using 275 data points, chi2=0.08)
[2025-10-13 05:35:05] 2025-10-13 09:33:37,836 | INFO     | could have reported an average CPU frequency of 2573 MHz (14 samples)
[2025-10-13 05:35:05] 2025-10-13 09:33:37,836 | INFO     | ..............................
[2025-10-13 05:35:05] 2025-10-13 09:33:37,836 | INFO     | . Timing measurements:
[2025-10-13 05:35:05] 2025-10-13 09:33:37,836 | INFO     | . get job = 0 s
[2025-10-13 05:35:05] 2025-10-13 09:33:37,836 | INFO     | . initial setup = 6 s
[2025-10-13 05:35:05] 2025-10-13 09:33:37,837 | INFO     | . payload setup = 54 s
[2025-10-13 05:35:05] 2025-10-13 09:33:37,837 | INFO     | . stage-in = 0 s
[2025-10-13 05:35:05] 2025-10-13 09:33:37,837 | INFO     | . payload execution = 19595 s
[2025-10-13 05:35:05] 2025-10-13 09:33:37,837 | INFO     | . stage-out = 7 s
[2025-10-13 05:35:05] 2025-10-13 09:33:37,837 | INFO     | . log creation = 1 s
[2025-10-13 05:35:05] 2025-10-13 09:33:37,837 | INFO     | ..............................
[2025-10-13 05:35:05] 2025-10-13 09:33:37,872 | INFO     | monitor loop #1026: job 0:6840750155 is in state 'finished'
[2025-10-13 05:35:05] 2025-10-13 09:33:37,873 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:35:05] 2025-10-13 09:33:39,159 | INFO     | 
[2025-10-13 05:35:05] 2025-10-13 09:33:39,159 | INFO     | job summary report
[2025-10-13 05:35:05] 2025-10-13 09:33:39,160 | INFO     | --------------------------------------------------
[2025-10-13 05:35:05] 2025-10-13 09:33:39,160 | INFO     | PanDA job id: 6840750155
[2025-10-13 05:35:05] 2025-10-13 09:33:39,160 | INFO     | task id: 46676269
[2025-10-13 05:35:05] 2025-10-13 09:33:39,160 | INFO     | errors: (none)
[2025-10-13 05:35:05] 2025-10-13 09:33:39,160 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:35:05] 2025-10-13 09:33:39,160 | INFO     | pilot state: finished 
[2025-10-13 05:35:05] 2025-10-13 09:33:39,160 | INFO     | transexitcode: 0
[2025-10-13 05:35:05] 2025-10-13 09:33:39,160 | INFO     | exeerrorcode: 0
[2025-10-13 05:35:05] 2025-10-13 09:33:39,160 | INFO     | exeerrordiag: 
[2025-10-13 05:35:05] 2025-10-13 09:33:39,160 | INFO     | exitcode: 0
[2025-10-13 05:35:05] 2025-10-13 09:33:39,160 | INFO     | exitmsg: OK
[2025-10-13 05:35:05] 2025-10-13 09:33:39,160 | INFO     | cpuconsumptiontime: 47605 s
[2025-10-13 05:35:05] 2025-10-13 09:33:39,161 | INFO     | nevents: 400
[2025-10-13 05:35:05] 2025-10-13 09:33:39,161 | INFO     | neventsw: 0
[2025-10-13 05:35:05] 2025-10-13 09:33:39,161 | INFO     | pid: 924175
[2025-10-13 05:35:05] 2025-10-13 09:33:39,161 | INFO     | pgrp: 924175
[2025-10-13 05:35:05] 2025-10-13 09:33:39,161 | INFO     | corecount: 12
[2025-10-13 05:35:05] 2025-10-13 09:33:39,161 | INFO     | event service: False
[2025-10-13 05:35:05] 2025-10-13 09:33:39,161 | INFO     | sizes: {0: 2348635, 1: 2348834, 2: 2348862, 13: 2348862, 24: 2348918, 36: 2348946, 42: 2349364, 47: 2349420, 19654: 2382372, 19655: 2382371, 19664: 2391425, 19667:
[2025-10-13 05:35:05] 2025-10-13 09:33:39,161 | INFO     | --------------------------------------------------
[2025-10-13 05:35:05] 2025-10-13 09:33:39,161 | INFO     | 
[2025-10-13 05:35:05] 2025-10-13 09:33:39,161 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-10-13 05:35:05] 2025-10-13 09:33:39,272 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:35:05] 2025-10-13 09:33:39,272 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:35:05] 2025-10-13 09:33:39,272 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:35:05] 2025-10-13 09:33:39,272 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:35:05] 2025-10-13 09:33:39,272 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:35:05] 2025-10-13 09:33:39,273 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:35:05] 2025-10-13 09:33:39,273 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:35:05] 2025-10-13 09:33:39,273 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:35:05] 2025-10-13 09:33:39,273 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:35:05] 2025-10-13 09:33:39,273 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:35:05] 2025-10-13 09:33:39,273 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:35:05] 2025-10-13 09:33:39,273 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:35:05] 2025-10-13 09:33:39,273 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:35:05] 2025-10-13 09:33:39,273 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:35:05] 2025-10-13 09:33:39,273 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:35:05] 2025-10-13 09:33:39,274 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:35:05] 2025-10-13 09:33:39,274 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:35:05] 2025-10-13 09:33:39,274 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:35:05] 2025-10-13 09:33:39,274 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:35:05] 2025-10-13 09:33:39,274 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:35:05] 2025-10-13 09:33:39,274 | INFO     | job 6840750155 has completed (purged errors)
[2025-10-13 05:35:05] 2025-10-13 09:33:39,274 | INFO     | overall cleanup function is called
[2025-10-13 05:35:05] 2025-10-13 09:33:40,415 | INFO     | --- collectZombieJob: --- 10, [924175]
[2025-10-13 05:35:05] 2025-10-13 09:33:40,416 | INFO     | zombie collector waiting for pid 924175
[2025-10-13 05:35:05] 2025-10-13 09:33:40,416 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:35:05] 2025-10-13 09:33:40,416 | INFO     | collected zombie processes
[2025-10-13 05:35:05] 2025-10-13 09:33:40,416 | INFO     | will attempt to kill all subprocesses of pid=924175
[2025-10-13 05:35:05] 2025-10-13 09:33:40,956 | INFO     | PID=898275 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 05:35:05] 2025-10-13 09:33:40,957 | INFO     | .. there are 47 such processes running
[2025-10-13 05:35:05] 2025-10-13 09:33:41,364 | INFO     | process IDs to be killed: [924175] (in reverse order)
[2025-10-13 05:35:05] 2025-10-13 09:33:42,186 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:35:05] 2025-10-13 09:33:42,186 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:35:05] 2025-10-13 09:33:42,323 | INFO     | did not find any defunct processes belonging to 924175
[2025-10-13 05:35:05] 2025-10-13 09:33:42,479 | INFO     | did not find any defunct processes belonging to 924175
[2025-10-13 05:35:05] 2025-10-13 09:33:42,479 | INFO     | ready for new job
[2025-10-13 05:35:05] 2025-10-13 09:33:42,479 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:35:05] 2025-10-13 09:33:42,490 | INFO     | ***************************************
[2025-10-13 05:35:05] 2025-10-13 09:33:42,490 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:35:05] 2025-10-13 09:33:42,490 | INFO     | ***************************************
[2025-10-13 05:35:05] 2025-10-13 09:33:42,490 | INFO     | 
[2025-10-13 05:35:05] 2025-10-13 09:33:42,539 | INFO     | architecture information:
[2025-10-13 05:35:05] 2025-10-13 09:33:42,562 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:35:05] 2025-10-13 09:33:42,655 | INFO     | cat /etc/os-release:
[2025-10-13 05:35:05] NAME="CentOS Linux"
[2025-10-13 05:35:05] VERSION="7 (Core)"
[2025-10-13 05:35:05] ID="centos"
[2025-10-13 05:35:05] ID_LIKE="rhel fedora"
[2025-10-13 05:35:05] VERSION_ID="7"
[2025-10-13 05:35:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:35:05] ANSI_COLOR="0;31"
[2025-10-13 05:35:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:35:05] HOME_URL="https://www.centos.org/"
[2025-10-13 05:35:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:35:05] 
[2025-10-13 05:35:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:35:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:35:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:35:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:35:05] 
[2025-10-13 05:35:05] 2025-10-13 09:33:42,659 | INFO     | ***************************************
[2025-10-13 05:35:05] 2025-10-13 09:33:43,164 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-10-13 05:35:05] 2025-10-13 09:33:43,227 | INFO     | sufficient remaining disk space (94004838400 B)
[2025-10-13 05:35:05] 2025-10-13 09:33:43,227 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:35:05] 2025-10-13 09:33:43,227 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:35:05] 2025-10-13 09:33:43,227 | INFO     | update_server=False
[2025-10-13 05:35:05] 2025-10-13 09:33:43,228 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:35:05] 2025-10-13 09:33:43,229 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:35:05] 2025-10-13 09:33:43,507 | INFO     | all payload control threads have been joined
[2025-10-13 05:35:05] 2025-10-13 09:33:43,940 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:35:05] 2025-10-13 09:33:43,941 | INFO     | aborting loop
[2025-10-13 05:35:05] 2025-10-13 09:33:44,186 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:35:05] 2025-10-13 09:33:44,233 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:35:05] 2025-10-13 09:33:44,318 | INFO     | all data control threads have been joined
[2025-10-13 05:35:05] 2025-10-13 09:33:44,522 | INFO     | [payload] control thread has finished
[2025-10-13 05:35:05] 2025-10-13 09:33:44,549 | INFO     | [job] validate thread has finished
[2025-10-13 05:35:05] 2025-10-13 09:33:44,549 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:35:05] 2025-10-13 09:33:44,662 | INFO     | all job control threads have been joined
[2025-10-13 05:35:05] 2025-10-13 09:33:44,788 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:35:05] 2025-10-13 09:33:44,795 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:35:05] 2025-10-13 09:33:44,947 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:35:05] 2025-10-13 09:33:45,192 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:35:05] 2025-10-13 09:33:45,243 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:35:05] 2025-10-13 09:33:45,324 | INFO     | [data] control thread has finished
[2025-10-13 05:35:05] 2025-10-13 09:33:45,446 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:35:05] 2025-10-13 09:33:45,455 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:35:05] 2025-10-13 09:33:45,668 | INFO     | [job] control thread has finished
[2025-10-13 05:35:05] 2025-10-13 09:33:45,683 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:35:05] 2025-10-13 09:33:45,822 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:35:05] 2025-10-13 09:33:45,823 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:35:05] 2025-10-13 09:33:48,558 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:35:05] 2025-10-13 09:34:16,356 | INFO     | PID=898275 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 05:35:05] 2025-10-13 09:34:16,356 | INFO     | .. there are 48 such processes running
[2025-10-13 05:35:05] 2025-10-13 09:34:16,365 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:35:05] 2025-10-13 09:34:16,366 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:35:05] 2025-10-13 09:34:16,366 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:35:05] 2025-10-13 09:34:17,211 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:35:05] 2025-10-13 09:34:19,172 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140498692417344)>', '<ExcThread(monitor, started 140497951639296)>']
[2025-10-13 05:35:05] 2025-10-13 09:34:19,386 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:35:05] 2025-10-13 09:34:19,387 | INFO     | [monitor] control thread has ended
[2025-10-13 05:35:05] 2025-10-13 09:34:24,198 | INFO     | all workflow threads have been joined
[2025-10-13 05:35:05] 2025-10-13 09:34:24,199 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:35:05] 2025-10-13 09:34:24,199 | INFO     | traces error code: 0
[2025-10-13 05:35:05] 2025-10-13 09:34:24,199 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:35:05] 2025-10-13 09:34:24,645 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:35:05] 2025-10-13 09:34:24,711 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:35:05] 2025-10-13 09:34:24,735 [wrapper] pilotpid: 898275
[2025-10-13 05:35:05] 2025-10-13 09:34:24,765 [wrapper] Pilot exit status: 0
[2025-10-13 05:35:05] 2025-10-13 09:34:24,863 [wrapper] pandaids: 6840750155
[2025-10-13 05:35:05] 2025-10-13 09:34:25,563 [wrapper] cleanup supervisor_pilot 1992560 898276
[2025-10-13 05:35:05] 2025-10-13 09:34:25,587 [wrapper] Test setup, not cleaning
[2025-10-13 05:35:05] 2025-10-13 09:34:25,635 [wrapper] apfmon messages muted
[2025-10-13 05:35:05] 2025-10-13 09:34:25,662 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:35:05] 2025-10-13 09:34:25,696 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:35:05]  *** Error codes and diagnostics ***
[2025-10-13 05:35:05]     "exeErrorCode": 0,
[2025-10-13 05:35:05]     "exeErrorDiag": "",
[2025-10-13 05:35:05]     "pilotErrorCode": 0,
[2025-10-13 05:35:05]     "pilotErrorDiag": "",
[2025-10-13 05:35:05]  *** Listing of results directory ***
[2025-10-13 05:35:05] total 413804
[2025-10-13 05:35:05] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 16:55 pilot3.tar.gz
[2025-10-13 05:35:05] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 17:05 queuedata.json
[2025-10-13 05:35:05] -rwx------. 1 boincer umatlas     36292 Oct 12 17:06 runpilot2-wrapper.sh
[2025-10-13 05:35:05] -rw-r--r--. 1 boincer umatlas       100 Oct 13 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:35:05] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 00:02 run_atlas
[2025-10-13 05:35:05] -rw-r--r--. 1 boincer umatlas       105 Oct 13 00:02 job.xml
[2025-10-13 05:35:05] -rw-r--r--. 2 boincer umatlas 223255615 Oct 13 00:02 EVNT.46676267._004771.pool.root.1
[2025-10-13 05:35:05] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:02 start_atlas.sh
[2025-10-13 05:35:05] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 00:02 shared
[2025-10-13 05:35:05] -rw-r--r--. 2 boincer umatlas    569680 Oct 13 00:02 input.tar.gz
[2025-10-13 05:35:05] -rw-r--r--. 1 boincer umatlas         0 Oct 13 00:02 boinc_lockfile
[2025-10-13 05:35:05] -rw-r--r--. 1 boincer umatlas      2549 Oct 13 00:02 pandaJob.out
[2025-10-13 05:35:05] -rw-------. 1 boincer umatlas    974373 Oct 13 00:03 agis_schedconf.cvmfs.json
[2025-10-13 05:35:05] drwx------. 5 boincer umatlas      4096 Oct 13 00:03 pilot3
[2025-10-13 05:35:05] -rw-r--r--. 1 boincer umatlas      6861 Oct 13 05:30 init_data.xml
[2025-10-13 05:35:05] -rw-------. 1 boincer umatlas 190982284 Oct 13 05:31 HITS.46676269._089534.pool.root.1
[2025-10-13 05:35:05] -rw-r--r--. 1 boincer umatlas       530 Oct 13 05:31 boinc_task_state.xml
[2025-10-13 05:35:05] -rw-------. 1 boincer umatlas      1047 Oct 13 05:32 memory_monitor_summary.json
[2025-10-13 05:35:05] -rw-------. 1 boincer umatlas   1560580 Oct 13 05:32 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:35:05] -rw-------. 1 boincer umatlas    573051 Oct 13 05:32 log.46676269._089534.job.log.tgz.1
[2025-10-13 05:35:05] -rw-------. 1 boincer umatlas      7837 Oct 13 05:33 heartbeat.json
[2025-10-13 05:35:05] -rw-------. 1 boincer umatlas        95 Oct 13 05:34 pilot_heartbeat.json
[2025-10-13 05:35:05] -rw-------. 1 boincer umatlas      4823 Oct 13 05:34 pilotlog.txt
[2025-10-13 05:35:05] -rw-------. 1 boincer umatlas   2226686 Oct 13 05:34 log.46676269._089534.job.log.1
[2025-10-13 05:35:05] -rw-------. 1 boincer umatlas       357 Oct 13 05:34 output.list
[2025-10-13 05:35:05] -rw-r--r--. 1 boincer umatlas       620 Oct 13 05:34 runtime_log
[2025-10-13 05:35:05] -rw-------. 1 boincer umatlas   2816000 Oct 13 05:34 result.tar.gz
[2025-10-13 05:35:05] -rw-r--r--. 1 boincer umatlas      8716 Oct 13 05:34 runtime_log.err
[2025-10-13 05:35:05] -rw-------. 1 boincer umatlas       657 Oct 13 05:34 p3XKDmnRIS8n9Rq4apOajLDm4fhM0noT9bVof3QYDml3UMDmPET5Kn.diag
[2025-10-13 05:35:05] -rw-r--r--. 1 boincer umatlas        28 Oct 13 05:35 wrapper_checkpoint.txt
[2025-10-13 05:35:05] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 05:35 boinc_mmap_file
[2025-10-13 05:35:05] -rw-r--r--. 1 boincer umatlas     21231 Oct 13 05:35 stderr.txt
[2025-10-13 05:35:05] HITS file was successfully produced:
[2025-10-13 05:35:05] -rw-------. 1 boincer umatlas 190982284 Oct 13 05:31 shared/HITS.pool.root.1
[2025-10-13 05:35:05]  *** Contents of shared directory: ***
[2025-10-13 05:35:05] total 407868
[2025-10-13 05:35:05] -rw-r--r--. 2 boincer umatlas 223255615 Oct 13 00:02 ATLAS.root_0
[2025-10-13 05:35:05] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:02 start_atlas.sh
[2025-10-13 05:35:05] -rw-r--r--. 2 boincer umatlas    569680 Oct 13 00:02 input.tar.gz
[2025-10-13 05:35:05] -rw-------. 1 boincer umatlas 190982284 Oct 13 05:31 HITS.pool.root.1
[2025-10-13 05:35:05] -rw-------. 1 boincer umatlas   2816000 Oct 13 05:34 result.tar.gz
05:35:07 (888720): run_atlas exited; CPU time 48677.720089
05:35:07 (888720): called boinc_finish(0)

</stderr_txt>
]]>

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