Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:51:43 (3514698): wrapper (7.7.26015): starting
14:51:43 (3514698): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 14:51:43] Arguments: --nthreads 3
[2025-10-13 14:51:43] Threads: 3
[2025-10-13 14:51:43] Checking for CVMFS
[2025-10-13 14:51:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 14:51:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 14:51:43] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 14:51:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 14:51:43] 2.9.2.0 1827752 5657 85276 151661 3 57 29576065 36864001 0 130560 0 4400477 99.991 200081 723 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 14:51:43] CVMFS is ok
[2025-10-13 14:51:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 14:51:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 14:51:43] Further information can be found at the LHC@home message board.
[2025-10-13 14:51:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 14:51:43] Checking for apptainer binary...
[2025-10-13 14:51:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 14:51:43] Running /usr/bin/apptainer --version
[2025-10-13 14:51:43] apptainer version 1.4.1-1.1
[2025-10-13 14:51:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 14:51:43] thA305b
[2025-10-13 14:51:43] apptainer works
[2025-10-13 14:51:43] Set ATHENA_PROC_NUMBER=3
[2025-10-13 14:51:43] Set ATHENA_CORE_NUMBER=3
[2025-10-13 14:51:43] Starting ATLAS job with PandaID=6840969192
[2025-10-13 14:51:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 16:18:01]  *** The last 200 lines of the pilot log: ***
[2025-10-13 16:18:01] 2025-10-13 14:17:31,637 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 16:18:01] 2025-10-13 14:17:31,637 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 16:18:01] 2025-10-13 14:17:31,637 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 16:18:01] 2025-10-13 14:17:31,637 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 16:18:01] 2025-10-13 14:17:31,637 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 16:18:01] 2025-10-13 14:17:31,637 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 16:18:01] 2025-10-13 14:17:31,638 | INFO     | job 6840969192 has completed (purged errors)
[2025-10-13 16:18:01] 2025-10-13 14:17:31,638 | INFO     | overall cleanup function is called
[2025-10-13 16:18:01] 2025-10-13 14:17:32,644 | INFO     | --- collectZombieJob: --- 10, [3524843]
[2025-10-13 16:18:01] 2025-10-13 14:17:32,644 | INFO     | zombie collector waiting for pid 3524843
[2025-10-13 16:18:01] 2025-10-13 14:17:32,644 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 16:18:01] 2025-10-13 14:17:32,645 | INFO     | collected zombie processes
[2025-10-13 16:18:01] 2025-10-13 14:17:32,645 | INFO     | will attempt to kill all subprocesses of pid=3524843
[2025-10-13 16:18:01] 2025-10-13 14:17:32,693 | INFO     | process IDs to be killed: [3524843] (in reverse order)
[2025-10-13 16:18:01] 2025-10-13 14:17:32,721 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 16:18:01] 2025-10-13 14:17:32,721 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 16:18:01] 2025-10-13 14:17:32,723 | INFO     | did not find any defunct processes belonging to 3524843
[2025-10-13 16:18:01] 2025-10-13 14:17:32,724 | INFO     | did not find any defunct processes belonging to 3524843
[2025-10-13 16:18:01] 2025-10-13 14:17:32,724 | INFO     | ready for new job
[2025-10-13 16:18:01] 2025-10-13 14:17:32,724 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 16:18:01] 2025-10-13 14:17:32,725 | INFO     | ***************************************
[2025-10-13 16:18:01] 2025-10-13 14:17:32,725 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 16:18:01] 2025-10-13 14:17:32,725 | INFO     | ***************************************
[2025-10-13 16:18:01] 2025-10-13 14:17:32,725 | INFO     | 
[2025-10-13 16:18:01] 2025-10-13 14:17:32,725 | INFO     | architecture information:
[2025-10-13 16:18:01] 2025-10-13 14:17:32,725 | INFO     | executing command: cat /etc/os-release
[2025-10-13 16:18:01] 2025-10-13 14:17:32,735 | INFO     | cat /etc/os-release:
[2025-10-13 16:18:01] NAME="CentOS Linux"
[2025-10-13 16:18:01] VERSION="7 (Core)"
[2025-10-13 16:18:01] ID="centos"
[2025-10-13 16:18:01] ID_LIKE="rhel fedora"
[2025-10-13 16:18:01] VERSION_ID="7"
[2025-10-13 16:18:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 16:18:01] ANSI_COLOR="0;31"
[2025-10-13 16:18:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 16:18:01] HOME_URL="https://www.centos.org/"
[2025-10-13 16:18:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 16:18:01] 
[2025-10-13 16:18:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 16:18:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 16:18:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 16:18:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 16:18:01] 
[2025-10-13 16:18:01] 2025-10-13 14:17:32,736 | INFO     | ***************************************
[2025-10-13 16:18:01] 2025-10-13 14:17:33,239 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 16:18:01] 2025-10-13 14:17:33,253 | INFO     | sufficient remaining disk space (175363850240 B)
[2025-10-13 16:18:01] 2025-10-13 14:17:33,253 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 16:18:01] 2025-10-13 14:17:33,253 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 16:18:01] 2025-10-13 14:17:33,253 | INFO     | update_server=False
[2025-10-13 16:18:01] 2025-10-13 14:17:33,253 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 16:18:01] 2025-10-13 14:17:33,253 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 16:18:01] 2025-10-13 14:17:33,253 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 16:18:01] 2025-10-13 14:17:33,253 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 16:18:01] 2025-10-13 14:17:33,254 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 16:18:01] 2025-10-13 14:17:33,254 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:18:01] 2025-10-13 14:17:33,254 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 16:18:01] 2025-10-13 14:17:33,254 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:18:01] 2025-10-13 14:17:33,254 | INFO     | aborting loop
[2025-10-13 16:18:01] 2025-10-13 14:17:33,460 | INFO     | all data control threads have been joined
[2025-10-13 16:18:01] 2025-10-13 14:17:33,561 | INFO     | all job control threads have been joined
[2025-10-13 16:18:01] 2025-10-13 14:17:34,222 | INFO     | all payload control threads have been joined
[2025-10-13 16:18:01] 2025-10-13 14:17:34,259 | INFO     | [job] retrieve thread has finished
[2025-10-13 16:18:01] 2025-10-13 14:17:34,259 | INFO     | [job] queue monitor thread has finished
[2025-10-13 16:18:01] 2025-10-13 14:17:34,259 | INFO     | [job] job monitor thread has finished
[2025-10-13 16:18:01] 2025-10-13 14:17:34,305 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 16:18:01] 2025-10-13 14:17:34,466 | INFO     | [data] control thread has finished
[2025-10-13 16:18:01] 2025-10-13 14:17:34,500 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 16:18:01] 2025-10-13 14:17:34,567 | INFO     | [job] control thread has finished
[2025-10-13 16:18:01] 2025-10-13 14:17:34,595 | INFO     | [payload] failed_post thread has finished
[2025-10-13 16:18:01] 2025-10-13 14:17:35,228 | INFO     | [payload] control thread has finished
[2025-10-13 16:18:01] 2025-10-13 14:17:35,260 | INFO     | [data] copytool_out thread has finished
[2025-10-13 16:18:01] 2025-10-13 14:17:35,331 | INFO     | [payload] validate_post thread has finished
[2025-10-13 16:18:01] 2025-10-13 14:17:35,392 | INFO     | [data] copytool_in thread has finished
[2025-10-13 16:18:01] 2025-10-13 14:17:35,588 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 16:18:01] 2025-10-13 14:17:35,629 | INFO     | [job] validate thread has finished
[2025-10-13 16:18:01] 2025-10-13 14:17:35,757 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 16:18:01] 2025-10-13 14:17:39,596 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 16:18:01] 2025-10-13 14:17:44,191 | INFO     | job.realtimelogging is not enabled
[2025-10-13 16:18:01] 2025-10-13 14:17:45,196 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 16:18:01] 2025-10-13 14:17:55,820 | INFO     | [monitor] cgroup control has ended
[2025-10-13 16:18:01] 2025-10-13 14:17:56,337 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140459492013888)>', '<ExcThread(monitor, started 140459137537792)>']
[2025-10-13 16:18:01] 2025-10-13 14:17:56,374 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 16:18:01] 2025-10-13 14:17:56,374 | INFO     | [monitor] control thread has ended
[2025-10-13 16:18:01] 2025-10-13 14:18:01,363 | INFO     | all workflow threads have been joined
[2025-10-13 16:18:01] 2025-10-13 14:18:01,363 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 16:18:01] 2025-10-13 14:18:01,363 | INFO     | traces error code: 0
[2025-10-13 16:18:01] 2025-10-13 14:18:01,363 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 16:18:01] 2025-10-13 14:18:01,416 [wrapper] ==== pilot stdout END ====
[2025-10-13 16:18:01] 2025-10-13 14:18:01,418 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 16:18:01] 2025-10-13 14:18:01,421 [wrapper] pilotpid: 3518415
[2025-10-13 16:18:01] 2025-10-13 14:18:01,423 [wrapper] Pilot exit status: 0
[2025-10-13 16:18:01] 2025-10-13 14:18:01,431 [wrapper] pandaids: 6840969192
[2025-10-13 16:18:01] 2025-10-13 14:18:01,449 [wrapper] cleanup supervisor_pilot 3536673 3518416
[2025-10-13 16:18:01] 2025-10-13 14:18:01,451 [wrapper] Test setup, not cleaning
[2025-10-13 16:18:01] 2025-10-13 14:18:01,454 [wrapper] apfmon messages muted
[2025-10-13 16:18:01] 2025-10-13 14:18:01,456 [wrapper] ==== wrapper stdout END ====
[2025-10-13 16:18:01] 2025-10-13 14:18:01,459 [wrapper] ==== wrapper stderr END ====
[2025-10-13 16:18:01]  *** Error codes and diagnostics ***
[2025-10-13 16:18:01]     "exeErrorCode": 0,
[2025-10-13 16:18:01]     "exeErrorDiag": "",
[2025-10-13 16:18:01]     "pilotErrorCode": 0,
[2025-10-13 16:18:01]     "pilotErrorDiag": "",
[2025-10-13 16:18:01]  *** Listing of results directory ***
[2025-10-13 16:18:01] total 412144
[2025-10-13 16:18:01] -rw-r--r-- 1 boinc boinc    557409 Oct 13 01:11 pilot3.tar.gz
[2025-10-13 16:18:01] -rwx------ 1 boinc boinc     36292 Oct 13 01:26 runpilot2-wrapper.sh
[2025-10-13 16:18:01] -rw-r--r-- 1 boinc boinc      5112 Oct 13 01:26 queuedata.json
[2025-10-13 16:18:01] -rw-r--r-- 1 boinc boinc       100 Oct 13 14:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 16:18:01] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 14:51 run_atlas
[2025-10-13 16:18:01] -rw-r--r-- 1 boinc boinc       105 Oct 13 14:51 job.xml
[2025-10-13 16:18:01] -rw-r--r-- 2 boinc boinc 222656356 Oct 13 14:51 EVNT.46676267._004657.pool.root.1
[2025-10-13 16:18:01] -rw-r--r-- 2 boinc boinc    569676 Oct 13 14:51 input.tar.gz
[2025-10-13 16:18:01] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:51 start_atlas.sh
[2025-10-13 16:18:01] drwxrwx--x 2 boinc boinc      4096 Oct 13 14:51 shared
[2025-10-13 16:18:01] -rw-r--r-- 1 boinc boinc         0 Oct 13 14:51 boinc_setup_complete
[2025-10-13 16:18:01] -rw-r--r-- 1 boinc boinc      6447 Oct 13 14:51 init_data.xml
[2025-10-13 16:18:01] -rw-r--r-- 1 boinc boinc         0 Oct 13 14:51 boinc_lockfile
[2025-10-13 16:18:01] -rw-r--r-- 1 boinc boinc      2547 Oct 13 14:51 pandaJob.out
[2025-10-13 16:18:01] -rw------- 1 boinc boinc    972497 Oct 13 14:51 agis_schedconf.cvmfs.json
[2025-10-13 16:18:01] -rw------- 1 boinc boinc   1560580 Oct 13 14:51 agis_ddmendpoints.agis.ALL.json
[2025-10-13 16:18:01] drwx------ 5 boinc boinc      4096 Oct 13 14:51 pilot3
[2025-10-13 16:18:01] -rw-r--r-- 1 boinc boinc       530 Oct 13 16:17 boinc_task_state.xml
[2025-10-13 16:18:01] -rw------- 1 boinc boinc 193500594 Oct 13 16:17 HITS.46676269._092193.pool.root.1
[2025-10-13 16:18:01] -rw------- 1 boinc boinc        95 Oct 13 16:17 pilot_heartbeat.json
[2025-10-13 16:18:01] -rw------- 1 boinc boinc      1014 Oct 13 16:17 memory_monitor_summary.json
[2025-10-13 16:18:01] -rw------- 1 boinc boinc    239613 Oct 13 16:17 log.46676269._092193.job.log.tgz.1
[2025-10-13 16:18:01] -rw------- 1 boinc boinc      7751 Oct 13 16:17 heartbeat.json
[2025-10-13 16:18:01] -rw-r--r-- 1 boinc boinc      8192 Oct 13 16:17 boinc_mmap_file
[2025-10-13 16:18:01] -rw-r--r-- 1 boinc boinc        27 Oct 13 16:17 wrapper_checkpoint.txt
[2025-10-13 16:18:01] -rw------- 1 boinc boinc      4628 Oct 13 16:18 pilotlog.txt
[2025-10-13 16:18:01] -rw------- 1 boinc boinc    752778 Oct 13 16:18 log.46676269._092193.job.log.1
[2025-10-13 16:18:01] -rw------- 1 boinc boinc       357 Oct 13 16:18 output.list
[2025-10-13 16:18:01] -rw-r--r-- 1 boinc boinc       620 Oct 13 16:18 runtime_log
[2025-10-13 16:18:01] -rw------- 1 boinc boinc   1013760 Oct 13 16:18 result.tar.gz
[2025-10-13 16:18:01] -rw------- 1 boinc boinc       659 Oct 13 16:18 ugdNDmhdKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmB3lNDm0G7PGo.diag
[2025-10-13 16:18:01] -rw-r--r-- 1 boinc boinc      8782 Oct 13 16:18 runtime_log.err
[2025-10-13 16:18:01] -rw-r--r-- 1 boinc boinc     11434 Oct 13 16:18 stderr.txt
[2025-10-13 16:18:01] HITS file was successfully produced:
[2025-10-13 16:18:01] -rw------- 1 boinc boinc 193500594 Oct 13 16:17 shared/HITS.pool.root.1
[2025-10-13 16:18:01]  *** Contents of shared directory: ***
[2025-10-13 16:18:01] total 407984
[2025-10-13 16:18:01] -rw-r--r-- 2 boinc boinc 222656356 Oct 13 14:51 ATLAS.root_0
[2025-10-13 16:18:01] -rw-r--r-- 2 boinc boinc    569676 Oct 13 14:51 input.tar.gz
[2025-10-13 16:18:01] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:51 start_atlas.sh
[2025-10-13 16:18:01] -rw------- 1 boinc boinc 193500594 Oct 13 16:17 HITS.pool.root.1
[2025-10-13 16:18:01] -rw------- 1 boinc boinc   1013760 Oct 13 16:18 result.tar.gz
16:18:02 (3514698): run_atlas exited; CPU time 14714.628669
16:18:02 (3514698): called boinc_finish(0)

</stderr_txt>
]]>

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