Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:58 (3846805): wrapper (7.7.26015): starting
00:01:58 (3846805): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 00:01:58] Arguments: --nthreads 8
[2025-10-13 00:01:58] Threads: 8
[2025-10-13 00:01:58] Checking for CVMFS
[2025-10-13 00:01:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:01:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:01:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:02:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:02:00] 2.13.2.0 2554489 130174 374976 151647 2 283 21463679 40960000 19554 16776704 0 324500605 99.733 234664189 22305 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 00:02:00] CVMFS is ok
[2025-10-13 00:02:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:02:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:02:00] Further information can be found at the LHC@home message board.
[2025-10-13 00:02:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:02:00] Checking for apptainer binary...
[2025-10-13 00:02:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:02:00] Running /usr/bin/apptainer --version
[2025-10-13 00:02:00] apptainer version 1.4.3-1.el9
[2025-10-13 00:02:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:02:01] c7-13-33.aglt2.org
[2025-10-13 00:02:01] apptainer works
[2025-10-13 00:02:01] Set ATHENA_PROC_NUMBER=8
[2025-10-13 00:02:01] Set ATHENA_CORE_NUMBER=8
[2025-10-13 00:02:01] Starting ATLAS job with PandaID=6840961611
[2025-10-13 00:02:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:27:32]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:27:32] 2025-10-13 09:26:31,352 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:27:32] 2025-10-13 09:26:31,353 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:27:32] 2025-10-13 09:26:31,353 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:27:32] 2025-10-13 09:26:31,358 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:27:32] 2025-10-13 09:26:31,358 | INFO     | sum of square deviations: 9970551848.028292
[2025-10-13 05:27:32] 2025-10-13 09:26:31,361 | INFO     | sum of deviations: 104812308628.03772
[2025-10-13 05:27:32] 2025-10-13 09:26:31,361 | INFO     | mean x: 1760337892.7830188
[2025-10-13 05:27:32] 2025-10-13 09:26:31,361 | INFO     | mean y: 2065940.7106918239
[2025-10-13 05:27:32] 2025-10-13 09:26:31,361 | INFO     | -- intersect: -18502935720.204372
[2025-10-13 05:27:32] 2025-10-13 09:26:31,361 | INFO     | intersect: -18502935720.204372
[2025-10-13 05:27:32] 2025-10-13 09:26:31,362 | INFO     | chi2: 2.316262138059359
[2025-10-13 05:27:32] 2025-10-13 09:26:31,362 | INFO     | sum of square deviations: 9507584570.121315
[2025-10-13 05:27:32] 2025-10-13 09:26:31,364 | INFO     | sum of deviations: 117353502554.55595
[2025-10-13 05:27:32] 2025-10-13 09:26:31,365 | INFO     | mean x: 1760337740.28754
[2025-10-13 05:27:32] 2025-10-13 09:26:31,365 | INFO     | mean y: 2069998.5271565495
[2025-10-13 05:27:32] 2025-10-13 09:26:31,365 | INFO     | -- intersect: -21726035387.032314
[2025-10-13 05:27:32] 2025-10-13 09:26:31,365 | INFO     | intersect: -21726035387.032314
[2025-10-13 05:27:32] 2025-10-13 09:26:31,365 | INFO     | chi2: 1.662176619032248
[2025-10-13 05:27:32] 2025-10-13 09:26:31,365 | INFO     | current chi2=1.662176619032248 (change=28.23883826789681 %)
[2025-10-13 05:27:32] 2025-10-13 09:26:31,366 | INFO     | sum of square deviations: 9059175704.701296
[2025-10-13 05:27:32] 2025-10-13 09:26:31,368 | INFO     | sum of deviations: 112158945362.1688
[2025-10-13 05:27:32] 2025-10-13 09:26:31,368 | INFO     | mean x: 1760337587.7922077
[2025-10-13 05:27:32] 2025-10-13 09:26:31,368 | INFO     | mean y: 2068230.737012987
[2025-10-13 05:27:32] 2025-10-13 09:26:31,368 | INFO     | -- intersect: -21792145035.895752
[2025-10-13 05:27:32] 2025-10-13 09:26:31,368 | INFO     | intersect: -21792145035.895752
[2025-10-13 05:27:32] 2025-10-13 09:26:31,368 | INFO     | chi2: 1.662167357293972
[2025-10-13 05:27:32] 2025-10-13 09:26:31,368 | INFO     | current chi2=1.662167357293972 (change=0.0005572054239026612 %)
[2025-10-13 05:27:32] 2025-10-13 09:26:31,368 | INFO     | right removable region: 307
[2025-10-13 05:27:32] 2025-10-13 09:26:31,369 | INFO     | sum of square deviations: 9507529670.121315
[2025-10-13 05:27:32] 2025-10-13 09:26:31,371 | INFO     | sum of deviations: 56912422412.42169
[2025-10-13 05:27:32] 2025-10-13 09:26:31,371 | INFO     | mean x: 1760338045.28754
[2025-10-13 05:27:32] 2025-10-13 09:26:31,371 | INFO     | mean y: 2081638.2619808307
[2025-10-13 05:27:32] 2025-10-13 09:26:31,371 | INFO     | -- intersect: -10535366668.305632
[2025-10-13 05:27:32] 2025-10-13 09:26:31,372 | INFO     | intersect: -10535366668.305632
[2025-10-13 05:27:32] 2025-10-13 09:26:31,372 | INFO     | chi2: 0.7961797594195011
[2025-10-13 05:27:32] 2025-10-13 09:26:31,372 | INFO     | current chi2=0.7961797594195011 (change=65.62652618901906 %)
[2025-10-13 05:27:32] 2025-10-13 09:26:31,372 | INFO     | sum of square deviations: 9059104211.857132
[2025-10-13 05:27:32] 2025-10-13 09:26:31,374 | INFO     | sum of deviations: 49181508879.14282
[2025-10-13 05:27:32] 2025-10-13 09:26:31,375 | INFO     | mean x: 1760338197.7857144
[2025-10-13 05:27:32] 2025-10-13 09:26:31,375 | INFO     | mean y: 2084261.8051948051
[2025-10-13 05:27:32] 2025-10-13 09:26:31,375 | INFO     | -- intersect: -9554720327.259592
[2025-10-13 05:27:32] 2025-10-13 09:26:31,375 | INFO     | intersect: -9554720327.259592
[2025-10-13 05:27:32] 2025-10-13 09:26:31,375 | INFO     | chi2: 0.7730871834110818
[2025-10-13 05:27:32] 2025-10-13 09:26:31,375 | INFO     | current chi2=0.7730871834110818 (change=2.900422390196934 %)
[2025-10-13 05:27:32] 2025-10-13 09:26:31,375 | INFO     | left removable region: 20
[2025-10-13 05:27:32] 2025-10-13 09:26:31,376 | INFO     | sum of square deviations: 7329515148.571418
[2025-10-13 05:27:32] 2025-10-13 09:26:31,377 | INFO     | sum of deviations: 48143849664.57141
[2025-10-13 05:27:32] 2025-10-13 09:26:31,378 | INFO     | mean x: 1760338167.2857144
[2025-10-13 05:27:32] 2025-10-13 09:26:31,378 | INFO     | mean y: 2090307.4808362368
[2025-10-13 05:27:32] 2025-10-13 09:26:31,378 | INFO     | -- intersect: -11560673990.936495
[2025-10-13 05:27:32] 2025-10-13 09:26:31,378 | INFO     | intersect: -11560673990.936495
[2025-10-13 05:27:32] 2025-10-13 09:26:31,378 | INFO     | chi2: 0.0989479193366526
[2025-10-13 05:27:32] 2025-10-13 09:26:31,378 | INFO     | -- intersect: -11560673990.936495
[2025-10-13 05:27:32] 2025-10-13 09:26:31,378 | INFO     | current memory leak: 6.57 B/s (using 287 data points, chi2=0.10)
[2025-10-13 05:27:32] 2025-10-13 09:26:31,379 | INFO     | could have reported an average CPU frequency of 3280 MHz (14 samples)
[2025-10-13 05:27:32] 2025-10-13 09:26:31,379 | INFO     | ..............................
[2025-10-13 05:27:32] 2025-10-13 09:26:31,379 | INFO     | . Timing measurements:
[2025-10-13 05:27:32] 2025-10-13 09:26:31,379 | INFO     | . get job = 0 s
[2025-10-13 05:27:32] 2025-10-13 09:26:31,379 | INFO     | . initial setup = 3 s
[2025-10-13 05:27:32] 2025-10-13 09:26:31,379 | INFO     | . payload setup = 17 s
[2025-10-13 05:27:32] 2025-10-13 09:26:31,379 | INFO     | . stage-in = 0 s
[2025-10-13 05:27:32] 2025-10-13 09:26:31,379 | INFO     | . payload execution = 19372 s
[2025-10-13 05:27:32] 2025-10-13 09:26:31,379 | INFO     | . stage-out = 2 s
[2025-10-13 05:27:32] 2025-10-13 09:26:31,379 | INFO     | . log creation = 0 s
[2025-10-13 05:27:32] 2025-10-13 09:26:31,379 | INFO     | ..............................
[2025-10-13 05:27:32] 2025-10-13 09:26:31,465 | INFO     | 
[2025-10-13 05:27:32] 2025-10-13 09:26:31,465 | INFO     | job summary report
[2025-10-13 05:27:32] 2025-10-13 09:26:31,465 | INFO     | --------------------------------------------------
[2025-10-13 05:27:32] 2025-10-13 09:26:31,465 | INFO     | PanDA job id: 6840961611
[2025-10-13 05:27:32] 2025-10-13 09:26:31,466 | INFO     | task id: 46676269
[2025-10-13 05:27:32] 2025-10-13 09:26:31,466 | INFO     | errors: (none)
[2025-10-13 05:27:32] 2025-10-13 09:26:31,466 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:27:32] 2025-10-13 09:26:31,466 | INFO     | pilot state: finished 
[2025-10-13 05:27:32] 2025-10-13 09:26:31,466 | INFO     | transexitcode: 0
[2025-10-13 05:27:32] 2025-10-13 09:26:31,466 | INFO     | exeerrorcode: 0
[2025-10-13 05:27:32] 2025-10-13 09:26:31,466 | INFO     | exeerrordiag: 
[2025-10-13 05:27:32] 2025-10-13 09:26:31,466 | INFO     | exitcode: 0
[2025-10-13 05:27:32] 2025-10-13 09:26:31,466 | INFO     | exitmsg: OK
[2025-10-13 05:27:32] 2025-10-13 09:26:31,466 | INFO     | cpuconsumptiontime: 32052 s
[2025-10-13 05:27:32] 2025-10-13 09:26:31,466 | INFO     | nevents: 400
[2025-10-13 05:27:32] 2025-10-13 09:26:31,466 | INFO     | neventsw: 0
[2025-10-13 05:27:32] 2025-10-13 09:26:31,466 | INFO     | pid: 3896131
[2025-10-13 05:27:32] 2025-10-13 09:26:31,466 | INFO     | pgrp: 3896131
[2025-10-13 05:27:32] 2025-10-13 09:26:31,466 | INFO     | corecount: 8
[2025-10-13 05:27:32] 2025-10-13 09:26:31,466 | INFO     | event service: False
[2025-10-13 05:27:32] 2025-10-13 09:26:31,466 | INFO     | sizes: {0: 2348684, 1: 2348883, 10: 2349145, 11: 2349173, 19393: 2382435, 19395: 2391617, 19401: 2391755}
[2025-10-13 05:27:32] 2025-10-13 09:26:31,467 | INFO     | --------------------------------------------------
[2025-10-13 05:27:32] 2025-10-13 09:26:31,467 | INFO     | 
[2025-10-13 05:27:32] 2025-10-13 09:26:31,467 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-13 05:27:32] 2025-10-13 09:26:31,498 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:27:32] 2025-10-13 09:26:31,498 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:27:32] 2025-10-13 09:26:31,498 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:27:32] 2025-10-13 09:26:31,498 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:27:32] 2025-10-13 09:26:31,498 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:27:32] 2025-10-13 09:26:31,498 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:27:32] 2025-10-13 09:26:31,498 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:27:32] 2025-10-13 09:26:31,499 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:27:32] 2025-10-13 09:26:31,499 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:27:32] 2025-10-13 09:26:31,499 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:27:32] 2025-10-13 09:26:31,499 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:27:32] 2025-10-13 09:26:31,499 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:27:32] 2025-10-13 09:26:31,499 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:27:32] 2025-10-13 09:26:31,499 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:27:32] 2025-10-13 09:26:31,499 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:27:32] 2025-10-13 09:26:31,499 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:27:32] 2025-10-13 09:26:31,499 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:27:32] 2025-10-13 09:26:31,499 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:27:32] 2025-10-13 09:26:31,499 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:27:32] 2025-10-13 09:26:31,499 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:27:32] 2025-10-13 09:26:31,499 | INFO     | job 6840961611 has completed (purged errors)
[2025-10-13 05:27:32] 2025-10-13 09:26:31,500 | INFO     | overall cleanup function is called
[2025-10-13 05:27:32] 2025-10-13 09:26:32,511 | INFO     | --- collectZombieJob: --- 10, [3896131]
[2025-10-13 05:27:32] 2025-10-13 09:26:32,511 | INFO     | zombie collector waiting for pid 3896131
[2025-10-13 05:27:32] 2025-10-13 09:26:32,511 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:27:32] 2025-10-13 09:26:32,511 | INFO     | collected zombie processes
[2025-10-13 05:27:32] 2025-10-13 09:26:32,511 | INFO     | will attempt to kill all subprocesses of pid=3896131
[2025-10-13 05:27:32] 2025-10-13 09:26:32,831 | INFO     | process IDs to be killed: [3896131] (in reverse order)
[2025-10-13 05:27:32] 2025-10-13 09:26:32,961 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:27:32] 2025-10-13 09:26:32,961 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:27:32] 2025-10-13 09:26:32,975 | INFO     | did not find any defunct processes belonging to 3896131
[2025-10-13 05:27:32] 2025-10-13 09:26:32,988 | INFO     | did not find any defunct processes belonging to 3896131
[2025-10-13 05:27:32] 2025-10-13 09:26:32,988 | INFO     | ready for new job
[2025-10-13 05:27:32] 2025-10-13 09:26:32,988 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:27:32] 2025-10-13 09:26:32,990 | INFO     | ***************************************
[2025-10-13 05:27:32] 2025-10-13 09:26:32,991 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:27:32] 2025-10-13 09:26:32,991 | INFO     | ***************************************
[2025-10-13 05:27:32] 2025-10-13 09:26:32,991 | INFO     | 
[2025-10-13 05:27:32] 2025-10-13 09:26:33,007 | INFO     | architecture information:
[2025-10-13 05:27:32] 2025-10-13 09:26:33,008 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:27:32] 2025-10-13 09:26:33,024 | INFO     | cat /etc/os-release:
[2025-10-13 05:27:32] NAME="CentOS Linux"
[2025-10-13 05:27:32] VERSION="7 (Core)"
[2025-10-13 05:27:32] ID="centos"
[2025-10-13 05:27:32] ID_LIKE="rhel fedora"
[2025-10-13 05:27:32] VERSION_ID="7"
[2025-10-13 05:27:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:27:32] ANSI_COLOR="0;31"
[2025-10-13 05:27:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:27:32] HOME_URL="https://www.centos.org/"
[2025-10-13 05:27:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:27:32] 
[2025-10-13 05:27:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:27:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:27:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:27:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:27:32] 
[2025-10-13 05:27:32] 2025-10-13 09:26:33,024 | INFO     | ***************************************
[2025-10-13 05:27:32] 2025-10-13 09:26:33,528 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-13 05:27:32] 2025-10-13 09:26:33,568 | INFO     | sufficient remaining disk space (84866498560 B)
[2025-10-13 05:27:32] 2025-10-13 09:26:33,568 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:27:32] 2025-10-13 09:26:33,568 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:27:32] 2025-10-13 09:26:33,568 | INFO     | update_server=False
[2025-10-13 05:27:32] 2025-10-13 09:26:33,568 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:27:32] 2025-10-13 09:26:33,569 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:27:32] 2025-10-13 09:26:33,569 | INFO     | aborting loop
[2025-10-13 05:27:32] 2025-10-13 09:26:33,569 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:27:32] 2025-10-13 09:26:34,556 | INFO     | all job control threads have been joined
[2025-10-13 05:27:32] 2025-10-13 09:26:34,575 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:27:32] 2025-10-13 09:26:34,576 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:27:32] 2025-10-13 09:26:34,600 | INFO     | all data control threads have been joined
[2025-10-13 05:27:32] 2025-10-13 09:26:34,696 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:27:32] 2025-10-13 09:26:34,728 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:27:32] 2025-10-13 09:26:34,819 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:27:32] 2025-10-13 09:26:35,009 | INFO     | all payload control threads have been joined
[2025-10-13 05:27:32] 2025-10-13 09:26:35,163 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:27:32] 2025-10-13 09:26:35,313 | INFO     | [job] validate thread has finished
[2025-10-13 05:27:32] 2025-10-13 09:26:35,319 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:27:32] 2025-10-13 09:26:35,505 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:27:32] 2025-10-13 09:26:35,561 | INFO     | [job] control thread has finished
[2025-10-13 05:27:32] 2025-10-13 09:26:35,575 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:27:32] 2025-10-13 09:26:35,605 | INFO     | [data] control thread has finished
[2025-10-13 05:27:32] 2025-10-13 09:26:35,939 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:27:32] 2025-10-13 09:26:35,977 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:27:32] 2025-10-13 09:26:36,015 | INFO     | [payload] control thread has finished
[2025-10-13 05:27:32] 2025-10-13 09:26:36,481 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:27:32] 2025-10-13 09:26:37,490 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:27:32] 2025-10-13 09:26:39,985 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:27:32] 2025-10-13 09:27:04,559 | INFO     | PID=3863361 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:27:32] 2025-10-13 09:27:04,559 | INFO     | .. there are 22 such processes running
[2025-10-13 05:27:32] 2025-10-13 09:27:04,560 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:27:32] 2025-10-13 09:27:04,560 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:27:32] 2025-10-13 09:27:04,560 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:27:32] 2025-10-13 09:27:25,409 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:27:32] 2025-10-13 09:27:27,254 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140663349425984)>', '<ExcThread(monitor, started 140662720685824)>']
[2025-10-13 05:27:32] 2025-10-13 09:27:27,689 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:27:32] 2025-10-13 09:27:27,689 | INFO     | [monitor] control thread has ended
[2025-10-13 05:27:32] 2025-10-13 09:27:32,280 | INFO     | all workflow threads have been joined
[2025-10-13 05:27:32] 2025-10-13 09:27:32,280 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:27:32] 2025-10-13 09:27:32,280 | INFO     | traces error code: 0
[2025-10-13 05:27:32] 2025-10-13 09:27:32,281 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:27:32] 2025-10-13 09:27:32,399 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:27:32] 2025-10-13 09:27:32,401 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:27:32] 2025-10-13 09:27:32,406 [wrapper] pilotpid: 3863361
[2025-10-13 05:27:32] 2025-10-13 09:27:32,408 [wrapper] Pilot exit status: 0
[2025-10-13 05:27:32] 2025-10-13 09:27:32,421 [wrapper] pandaids: 6840961611
[2025-10-13 05:27:32] 2025-10-13 09:27:32,507 [wrapper] cleanup supervisor_pilot  917800 3863362
[2025-10-13 05:27:32] 2025-10-13 09:27:32,511 [wrapper] Test setup, not cleaning
[2025-10-13 05:27:32] 2025-10-13 09:27:32,515 [wrapper] apfmon messages muted
[2025-10-13 05:27:32] 2025-10-13 09:27:32,518 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:27:32] 2025-10-13 09:27:32,520 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:27:32]  *** Error codes and diagnostics ***
[2025-10-13 05:27:32]     "exeErrorCode": 0,
[2025-10-13 05:27:32]     "exeErrorDiag": "",
[2025-10-13 05:27:32]     "pilotErrorCode": 0,
[2025-10-13 05:27:32]     "pilotErrorDiag": "",
[2025-10-13 05:27:32]  *** Listing of results directory ***
[2025-10-13 05:27:32] total 406564
[2025-10-13 05:27:32] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 19:11 pilot3.tar.gz
[2025-10-13 05:27:32] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 19:11 queuedata.json
[2025-10-13 05:27:32] -rwx------. 1 boincer umatlas     36292 Oct 12 19:12 runpilot2-wrapper.sh
[2025-10-13 05:27:32] -rw-r--r--. 1 boincer umatlas       100 Oct 13 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:27:32] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 00:01 run_atlas
[2025-10-13 05:27:32] -rw-r--r--. 1 boincer umatlas       105 Oct 13 00:01 job.xml
[2025-10-13 05:27:32] -rw-r--r--. 2 boincer umatlas 220336227 Oct 13 00:01 EVNT.46676267._004646.pool.root.1
[2025-10-13 05:27:32] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:01 start_atlas.sh
[2025-10-13 05:27:32] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 00:01 shared
[2025-10-13 05:27:32] -rw-r--r--. 2 boincer umatlas    569675 Oct 13 00:01 input.tar.gz
[2025-10-13 05:27:32] -rw-r--r--. 1 boincer umatlas         0 Oct 13 00:01 boinc_lockfile
[2025-10-13 05:27:32] -rw-r--r--. 1 boincer umatlas      2549 Oct 13 00:02 pandaJob.out
[2025-10-13 05:27:32] -rw-------. 1 boincer umatlas    974373 Oct 13 00:02 agis_schedconf.cvmfs.json
[2025-10-13 05:27:32] drwx------. 5 boincer umatlas      4096 Oct 13 00:02 pilot3
[2025-10-13 05:27:32] -rw-r--r--. 1 boincer umatlas      6899 Oct 13 05:18 init_data.xml
[2025-10-13 05:27:32] -rw-r--r--. 1 boincer umatlas       530 Oct 13 05:25 boinc_task_state.xml
[2025-10-13 05:27:32] -rw-------. 1 boincer umatlas 186370868 Oct 13 05:25 HITS.46676269._091897.pool.root.1
[2025-10-13 05:27:32] -rw-------. 1 boincer umatlas      1043 Oct 13 05:26 memory_monitor_summary.json
[2025-10-13 05:27:32] -rw-------. 1 boincer umatlas   1560580 Oct 13 05:26 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:27:32] -rw-------. 1 boincer umatlas    502607 Oct 13 05:26 log.46676269._091897.job.log.tgz.1
[2025-10-13 05:27:32] -rw-------. 1 boincer umatlas      7799 Oct 13 05:26 heartbeat.json
[2025-10-13 05:27:32] -rw-------. 1 boincer umatlas        95 Oct 13 05:27 pilot_heartbeat.json
[2025-10-13 05:27:32] -rw-r--r--. 1 boincer umatlas        28 Oct 13 05:27 wrapper_checkpoint.txt
[2025-10-13 05:27:32] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 05:27 boinc_mmap_file
[2025-10-13 05:27:32] -rw-------. 1 boincer umatlas      4824 Oct 13 05:27 pilotlog.txt
[2025-10-13 05:27:32] -rw-------. 1 boincer umatlas   2351170 Oct 13 05:27 log.46676269._091897.job.log.1
[2025-10-13 05:27:32] -rw-------. 1 boincer umatlas       357 Oct 13 05:27 output.list
[2025-10-13 05:27:32] -rw-r--r--. 1 boincer umatlas       620 Oct 13 05:27 runtime_log
[2025-10-13 05:27:32] -rw-------. 1 boincer umatlas   2877440 Oct 13 05:27 result.tar.gz
[2025-10-13 05:27:32] -rw-------. 1 boincer umatlas       658 Oct 13 05:27 WkHODmqPKS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmVGVMDmJqGqfm.diag
[2025-10-13 05:27:32] -rw-r--r--. 1 boincer umatlas      8704 Oct 13 05:27 runtime_log.err
[2025-10-13 05:27:32] -rw-r--r--. 1 boincer umatlas     20978 Oct 13 05:27 stderr.txt
[2025-10-13 05:27:32] HITS file was successfully produced:
[2025-10-13 05:27:32] -rw-------. 1 boincer umatlas 186370868 Oct 13 05:25 shared/HITS.pool.root.1
[2025-10-13 05:27:32]  *** Contents of shared directory: ***
[2025-10-13 05:27:32] total 400572
[2025-10-13 05:27:32] -rw-r--r--. 2 boincer umatlas 220336227 Oct 13 00:01 ATLAS.root_0
[2025-10-13 05:27:32] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:01 start_atlas.sh
[2025-10-13 05:27:32] -rw-r--r--. 2 boincer umatlas    569675 Oct 13 00:01 input.tar.gz
[2025-10-13 05:27:32] -rw-------. 1 boincer umatlas 186370868 Oct 13 05:25 HITS.pool.root.1
[2025-10-13 05:27:32] -rw-------. 1 boincer umatlas   2877440 Oct 13 05:27 result.tar.gz
05:27:34 (3846805): run_atlas exited; CPU time 32427.448307
05:27:34 (3846805): called boinc_finish(0)

</stderr_txt>
]]>

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