Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:00 (2414633): wrapper (7.7.26015): starting
00:01:00 (2414633): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 00:01:00] Arguments: --nthreads 9
[2025-10-13 00:01:00] Threads: 9
[2025-10-13 00:01:00] Checking for CVMFS
[2025-10-13 00:01:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:01:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:01:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:01:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:01:03] 2.13.2.0 839487 139022 262988 151647 1 579 32208773 32935937 17474 16776704 0 102440240 99.692 85017904 29262 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 00:01:03] CVMFS is ok
[2025-10-13 00:01:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:01:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:01:03] Further information can be found at the LHC@home message board.
[2025-10-13 00:01:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:01:03] Checking for apptainer binary...
[2025-10-13 00:01:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:01:03] Running /usr/bin/apptainer --version
[2025-10-13 00:01:03] apptainer version 1.4.3-1.el9
[2025-10-13 00:01:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:01:03] c-6-3.aglt2.org
[2025-10-13 00:01:03] apptainer works
[2025-10-13 00:01:04] Set ATHENA_PROC_NUMBER=9
[2025-10-13 00:01:04] Set ATHENA_CORE_NUMBER=9
[2025-10-13 00:01:04] Starting ATLAS job with PandaID=6840961643
[2025-10-13 00:01:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 09:30:44]  *** The last 200 lines of the pilot log: ***
[2025-10-13 09:30:44] 2025-10-13 13:30:10,991 | INFO     | current chi2=0.5565566887324106 (change=45.09780461002009 %)
[2025-10-13 09:30:44] 2025-10-13 13:30:10,992 | INFO     | sum of square deviations: 47478929931.02802
[2025-10-13 09:30:44] 2025-10-13 13:30:11,006 | INFO     | sum of deviations: 119418987283.15881
[2025-10-13 09:30:44] 2025-10-13 13:30:11,006 | INFO     | mean x: 1760345860.6542056
[2025-10-13 09:30:44] 2025-10-13 13:30:11,007 | INFO     | mean y: 2467975.9738317756
[2025-10-13 09:30:44] 2025-10-13 13:30:11,007 | INFO     | -- intersect: -4425153292.087761
[2025-10-13 09:30:44] 2025-10-13 13:30:11,007 | INFO     | intersect: -4425153292.087761
[2025-10-13 09:30:44] 2025-10-13 13:30:11,008 | INFO     | chi2: 0.2962898579762292
[2025-10-13 09:30:44] 2025-10-13 13:30:11,008 | INFO     | current chi2=0.2962898579762292 (change=46.76375938432325 %)
[2025-10-13 09:30:44] 2025-10-13 13:30:11,009 | INFO     | sum of square deviations: 46159826117.38867
[2025-10-13 09:30:44] 2025-10-13 13:30:11,018 | INFO     | sum of deviations: 88940004560.39615
[2025-10-13 09:30:44] 2025-10-13 13:30:11,019 | INFO     | mean x: 1760346013.1660378
[2025-10-13 09:30:44] 2025-10-13 13:30:11,019 | INFO     | mean y: 2471496.1886792453
[2025-10-13 09:30:44] 2025-10-13 13:30:11,019 | INFO     | -- intersect: -3389334660.981475
[2025-10-13 09:30:44] 2025-10-13 13:30:11,019 | INFO     | intersect: -3389334660.981475
[2025-10-13 09:30:44] 2025-10-13 13:30:11,020 | INFO     | chi2: 0.19057647228521357
[2025-10-13 09:30:44] 2025-10-13 13:30:11,021 | INFO     | current chi2=0.19057647228521357 (change=35.67904295242425 %)
[2025-10-13 09:30:44] 2025-10-13 13:30:11,022 | INFO     | sum of square deviations: 44865471531.649666
[2025-10-13 09:30:44] 2025-10-13 13:30:11,030 | INFO     | sum of deviations: 63256212071.455246
[2025-10-13 09:30:44] 2025-10-13 13:30:11,031 | INFO     | mean x: 1760346165.672381
[2025-10-13 09:30:44] 2025-10-13 13:30:11,031 | INFO     | mean y: 2474522.4038095237
[2025-10-13 09:30:44] 2025-10-13 13:30:11,031 | INFO     | -- intersect: -2479452593.783815
[2025-10-13 09:30:44] 2025-10-13 13:30:11,031 | INFO     | intersect: -2479452593.783815
[2025-10-13 09:30:44] 2025-10-13 13:30:11,032 | INFO     | chi2: 0.11847055834335302
[2025-10-13 09:30:44] 2025-10-13 13:30:11,032 | INFO     | current chi2=0.11847055834335302 (change=37.83568510699896 %)
[2025-10-13 09:30:44] 2025-10-13 13:30:11,033 | INFO     | sum of square deviations: 43595631722.42311
[2025-10-13 09:30:44] 2025-10-13 13:30:11,042 | INFO     | sum of deviations: 40806880952.19227
[2025-10-13 09:30:44] 2025-10-13 13:30:11,043 | INFO     | mean x: 1760346318.1730769
[2025-10-13 09:30:44] 2025-10-13 13:30:11,043 | INFO     | mean y: 2477215.7423076923
[2025-10-13 09:30:44] 2025-10-13 13:30:11,043 | INFO     | -- intersect: -1645262243.5157464
[2025-10-13 09:30:44] 2025-10-13 13:30:11,043 | INFO     | intersect: -1645262243.5157464
[2025-10-13 09:30:44] 2025-10-13 13:30:11,044 | INFO     | chi2: 0.056547270509245066
[2025-10-13 09:30:44] 2025-10-13 13:30:11,045 | INFO     | current chi2=0.056547270509245066 (change=52.26892546132941 %)
[2025-10-13 09:30:44] 2025-10-13 13:30:11,046 | INFO     | sum of square deviations: 42349851651.774895
[2025-10-13 09:30:44] 2025-10-13 13:30:11,054 | INFO     | sum of deviations: 38490877901.57473
[2025-10-13 09:30:44] 2025-10-13 13:30:11,055 | INFO     | mean x: 1760346470.6815534
[2025-10-13 09:30:44] 2025-10-13 13:30:11,055 | INFO     | mean y: 2477498.881553398
[2025-10-13 09:30:44] 2025-10-13 13:30:11,055 | INFO     | -- intersect: -1597463904.0922146
[2025-10-13 09:30:44] 2025-10-13 13:30:11,056 | INFO     | intersect: -1597463904.0922146
[2025-10-13 09:30:44] 2025-10-13 13:30:11,057 | INFO     | chi2: 0.05632666276121828
[2025-10-13 09:30:44] 2025-10-13 13:30:11,057 | INFO     | current chi2=0.05632666276121828 (change=0.3901297905983212 %)
[2025-10-13 09:30:44] 2025-10-13 13:30:11,057 | INFO     | left removable region: 80
[2025-10-13 09:30:44] 2025-10-13 13:30:11,058 | INFO     | sum of square deviations: 31984749679.77408
[2025-10-13 09:30:44] 2025-10-13 13:30:11,065 | INFO     | sum of deviations: 53243551250.75691
[2025-10-13 09:30:44] 2025-10-13 13:30:11,065 | INFO     | mean x: 1760347507.6695096
[2025-10-13 09:30:44] 2025-10-13 13:30:11,066 | INFO     | mean y: 2479061.682302772
[2025-10-13 09:30:44] 2025-10-13 13:30:11,066 | INFO     | -- intersect: -2927890995.3643894
[2025-10-13 09:30:44] 2025-10-13 13:30:11,066 | INFO     | intersect: -2927890995.3643894
[2025-10-13 09:30:44] 2025-10-13 13:30:11,067 | INFO     | chi2: 0.004212123737926799
[2025-10-13 09:30:44] 2025-10-13 13:30:11,067 | INFO     | -- intersect: -2927890995.3643894
[2025-10-13 09:30:44] 2025-10-13 13:30:11,067 | INFO     | current memory leak: 1.66 B/s (using 469 data points, chi2=0.00)
[2025-10-13 09:30:44] 2025-10-13 13:30:11,068 | INFO     | could have reported an average CPU frequency of 2601 MHz (22 samples)
[2025-10-13 09:30:44] 2025-10-13 13:30:11,068 | INFO     | ..............................
[2025-10-13 09:30:44] 2025-10-13 13:30:11,069 | INFO     | . Timing measurements:
[2025-10-13 09:30:44] 2025-10-13 13:30:11,069 | INFO     | . get job = 0 s
[2025-10-13 09:30:44] 2025-10-13 13:30:11,069 | INFO     | . initial setup = 6 s
[2025-10-13 09:30:44] 2025-10-13 13:30:11,069 | INFO     | . payload setup = 64 s
[2025-10-13 09:30:44] 2025-10-13 13:30:11,069 | INFO     | . stage-in = 0 s
[2025-10-13 09:30:44] 2025-10-13 13:30:11,069 | INFO     | . payload execution = 33902 s
[2025-10-13 09:30:44] 2025-10-13 13:30:11,069 | INFO     | . stage-out = 2 s
[2025-10-13 09:30:44] 2025-10-13 13:30:11,069 | INFO     | . log creation = 0 s
[2025-10-13 09:30:44] 2025-10-13 13:30:11,070 | INFO     | ..............................
[2025-10-13 09:30:44] 2025-10-13 13:30:11,202 | INFO     | 
[2025-10-13 09:30:44] 2025-10-13 13:30:11,203 | INFO     | job summary report
[2025-10-13 09:30:44] 2025-10-13 13:30:11,203 | INFO     | --------------------------------------------------
[2025-10-13 09:30:44] 2025-10-13 13:30:11,203 | INFO     | PanDA job id: 6840961643
[2025-10-13 09:30:44] 2025-10-13 13:30:11,204 | INFO     | task id: 46676269
[2025-10-13 09:30:44] 2025-10-13 13:30:11,204 | INFO     | errors: (none)
[2025-10-13 09:30:44] 2025-10-13 13:30:11,204 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 09:30:44] 2025-10-13 13:30:11,205 | INFO     | pilot state: finished 
[2025-10-13 09:30:44] 2025-10-13 13:30:11,205 | INFO     | transexitcode: 0
[2025-10-13 09:30:44] 2025-10-13 13:30:11,205 | INFO     | exeerrorcode: 0
[2025-10-13 09:30:44] 2025-10-13 13:30:11,205 | INFO     | exeerrordiag: 
[2025-10-13 09:30:44] 2025-10-13 13:30:11,206 | INFO     | exitcode: 0
[2025-10-13 09:30:44] 2025-10-13 13:30:11,206 | INFO     | exitmsg: OK
[2025-10-13 09:30:44] 2025-10-13 13:30:11,206 | INFO     | cpuconsumptiontime: 51335 s
[2025-10-13 09:30:44] 2025-10-13 13:30:11,206 | INFO     | nevents: 400
[2025-10-13 09:30:44] 2025-10-13 13:30:11,207 | INFO     | neventsw: 0
[2025-10-13 09:30:44] 2025-10-13 13:30:11,207 | INFO     | pid: 2442739
[2025-10-13 09:30:44] 2025-10-13 13:30:11,207 | INFO     | pgrp: 2442739
[2025-10-13 09:30:44] 2025-10-13 13:30:11,207 | INFO     | corecount: 9
[2025-10-13 09:30:44] 2025-10-13 13:30:11,207 | INFO     | event service: False
[2025-10-13 09:30:44] 2025-10-13 13:30:11,208 | INFO     | sizes: {0: 2348028, 1: 2348713, 2: 2348912, 3: 2348912, 15: 2348940, 25: 2348968, 36: 2349124, 40: 2349414, 48: 2349442, 33970: 2388291, 33972: 2397289, 33974: 239
[2025-10-13 09:30:44] 2025-10-13 13:30:11,208 | INFO     | --------------------------------------------------
[2025-10-13 09:30:44] 2025-10-13 13:30:11,208 | INFO     | 
[2025-10-13 09:30:44] 2025-10-13 13:30:11,209 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-13 09:30:44] 2025-10-13 13:30:11,231 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 09:30:44] 2025-10-13 13:30:11,232 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 09:30:44] 2025-10-13 13:30:11,232 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 09:30:44] 2025-10-13 13:30:11,232 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 09:30:44] 2025-10-13 13:30:11,232 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 09:30:44] 2025-10-13 13:30:11,232 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 09:30:44] 2025-10-13 13:30:11,232 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 09:30:44] 2025-10-13 13:30:11,232 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 09:30:44] 2025-10-13 13:30:11,233 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 09:30:44] 2025-10-13 13:30:11,233 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 09:30:44] 2025-10-13 13:30:11,233 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 09:30:44] 2025-10-13 13:30:11,233 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 09:30:44] 2025-10-13 13:30:11,233 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 09:30:44] 2025-10-13 13:30:11,234 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 09:30:44] 2025-10-13 13:30:11,234 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 09:30:44] 2025-10-13 13:30:11,234 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 09:30:44] 2025-10-13 13:30:11,234 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 09:30:44] 2025-10-13 13:30:11,234 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 09:30:44] 2025-10-13 13:30:11,234 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 09:30:44] 2025-10-13 13:30:11,234 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 09:30:44] 2025-10-13 13:30:11,235 | INFO     | job 6840961643 has completed (purged errors)
[2025-10-13 09:30:44] 2025-10-13 13:30:11,235 | INFO     | overall cleanup function is called
[2025-10-13 09:30:44] 2025-10-13 13:30:11,629 | INFO     | PID=2422352 has CPU usage=12.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 09:30:44] 2025-10-13 13:30:11,629 | INFO     | .. there are 16 such processes running
[2025-10-13 09:30:44] 2025-10-13 13:30:12,247 | INFO     | --- collectZombieJob: --- 10, [2442739]
[2025-10-13 09:30:44] 2025-10-13 13:30:12,247 | INFO     | zombie collector waiting for pid 2442739
[2025-10-13 09:30:44] 2025-10-13 13:30:12,247 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 09:30:44] 2025-10-13 13:30:12,247 | INFO     | collected zombie processes
[2025-10-13 09:30:44] 2025-10-13 13:30:12,247 | INFO     | will attempt to kill all subprocesses of pid=2442739
[2025-10-13 09:30:44] 2025-10-13 13:30:12,556 | INFO     | process IDs to be killed: [2442739] (in reverse order)
[2025-10-13 09:30:44] 2025-10-13 13:30:12,642 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 09:30:44] 2025-10-13 13:30:12,642 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 09:30:44] 2025-10-13 13:30:12,654 | INFO     | did not find any defunct processes belonging to 2442739
[2025-10-13 09:30:44] 2025-10-13 13:30:12,666 | INFO     | did not find any defunct processes belonging to 2442739
[2025-10-13 09:30:44] 2025-10-13 13:30:12,666 | INFO     | ready for new job
[2025-10-13 09:30:44] 2025-10-13 13:30:12,667 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 09:30:44] 2025-10-13 13:30:12,670 | INFO     | ***************************************
[2025-10-13 09:30:44] 2025-10-13 13:30:12,670 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 09:30:44] 2025-10-13 13:30:12,670 | INFO     | ***************************************
[2025-10-13 09:30:44] 2025-10-13 13:30:12,670 | INFO     | 
[2025-10-13 09:30:44] 2025-10-13 13:30:12,684 | INFO     | architecture information:
[2025-10-13 09:30:44] 2025-10-13 13:30:12,684 | INFO     | executing command: cat /etc/os-release
[2025-10-13 09:30:44] 2025-10-13 13:30:12,699 | INFO     | cat /etc/os-release:
[2025-10-13 09:30:44] NAME="CentOS Linux"
[2025-10-13 09:30:44] VERSION="7 (Core)"
[2025-10-13 09:30:44] ID="centos"
[2025-10-13 09:30:44] ID_LIKE="rhel fedora"
[2025-10-13 09:30:44] VERSION_ID="7"
[2025-10-13 09:30:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 09:30:44] ANSI_COLOR="0;31"
[2025-10-13 09:30:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 09:30:44] HOME_URL="https://www.centos.org/"
[2025-10-13 09:30:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 09:30:44] 
[2025-10-13 09:30:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 09:30:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 09:30:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 09:30:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 09:30:44] 
[2025-10-13 09:30:44] 2025-10-13 13:30:12,700 | INFO     | ***************************************
[2025-10-13 09:30:44] 2025-10-13 13:30:13,202 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-13 09:30:44] 2025-10-13 13:30:13,220 | INFO     | sufficient remaining disk space (75871813632 B)
[2025-10-13 09:30:44] 2025-10-13 13:30:13,220 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 09:30:44] 2025-10-13 13:30:13,221 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 09:30:44] 2025-10-13 13:30:13,221 | INFO     | update_server=False
[2025-10-13 09:30:44] 2025-10-13 13:30:13,221 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 09:30:44] 2025-10-13 13:30:13,221 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 09:30:44] 2025-10-13 13:30:13,273 | INFO     | all data control threads have been joined
[2025-10-13 09:30:44] 2025-10-13 13:30:13,618 | INFO     | all job control threads have been joined
[2025-10-13 09:30:44] 2025-10-13 13:30:13,822 | INFO     | all payload control threads have been joined
[2025-10-13 09:30:44] 2025-10-13 13:30:14,015 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:30:44] 2025-10-13 13:30:14,016 | INFO     | aborting loop
[2025-10-13 09:30:44] 2025-10-13 13:30:14,227 | INFO     | [job] retrieve thread has finished
[2025-10-13 09:30:44] 2025-10-13 13:30:14,278 | INFO     | [data] control thread has finished
[2025-10-13 09:30:44] 2025-10-13 13:30:14,321 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 09:30:44] 2025-10-13 13:30:14,337 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 09:30:44] 2025-10-13 13:30:14,411 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 09:30:44] 2025-10-13 13:30:14,623 | INFO     | [job] control thread has finished
[2025-10-13 09:30:44] 2025-10-13 13:30:14,829 | INFO     | [payload] control thread has finished
[2025-10-13 09:30:44] 2025-10-13 13:30:15,021 | INFO     | [job] job monitor thread has finished
[2025-10-13 09:30:44] 2025-10-13 13:30:15,026 | INFO     | [data] copytool_in thread has finished
[2025-10-13 09:30:44] 2025-10-13 13:30:15,226 | INFO     | [data] copytool_out thread has finished
[2025-10-13 09:30:44] 2025-10-13 13:30:15,402 | INFO     | [payload] validate_post thread has finished
[2025-10-13 09:30:44] 2025-10-13 13:30:15,454 | INFO     | [job] validate thread has finished
[2025-10-13 09:30:44] 2025-10-13 13:30:15,486 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 09:30:44] 2025-10-13 13:30:15,736 | INFO     | [payload] failed_post thread has finished
[2025-10-13 09:30:44] 2025-10-13 13:30:16,215 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:30:44] 2025-10-13 13:30:17,220 | INFO     | [job] queue monitor thread has finished
[2025-10-13 09:30:44] 2025-10-13 13:30:18,351 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 09:30:44] 2025-10-13 13:30:23,520 | INFO     | job.realtimelogging is not enabled
[2025-10-13 09:30:44] 2025-10-13 13:30:24,525 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 09:30:44] 2025-10-13 13:30:36,503 | INFO     | [monitor] cgroup control has ended
[2025-10-13 09:30:44] 2025-10-13 13:30:38,082 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139640157439808)>', '<ExcThread(monitor, started 139639444727552)>']
[2025-10-13 09:30:44] 2025-10-13 13:30:43,107 | INFO     | all workflow threads have been joined
[2025-10-13 09:30:44] 2025-10-13 13:30:43,107 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 09:30:44] 2025-10-13 13:30:43,107 | INFO     | traces error code: 0
[2025-10-13 09:30:44] 2025-10-13 13:30:43,108 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 09:30:44] 2025-10-13 13:30:44,111 | INFO     | PID=2422352 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 09:30:44] 2025-10-13 13:30:44,111 | INFO     | .. there are 15 such processes running
[2025-10-13 09:30:44] 2025-10-13 13:30:44,112 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 09:30:44] 2025-10-13 13:30:44,112 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 09:30:44] 2025-10-13 13:30:44,112 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 09:30:44] 2025-10-13 13:30:44,112 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 09:30:44] 2025-10-13 13:30:44,112 | INFO     | [monitor] control thread has ended
[2025-10-13 09:30:44] 2025-10-13 13:30:44,307 [wrapper] ==== pilot stdout END ====
[2025-10-13 09:30:44] 2025-10-13 13:30:44,311 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 09:30:44] 2025-10-13 13:30:44,314 [wrapper] pilotpid: 2422352
[2025-10-13 09:30:44] 2025-10-13 13:30:44,318 [wrapper] Pilot exit status: 0
[2025-10-13 09:30:44] 2025-10-13 13:30:44,333 [wrapper] pandaids: 6840961643
[2025-10-13 09:30:44] 2025-10-13 13:30:44,393 [wrapper] cleanup supervisor_pilot 3774573 2422353
[2025-10-13 09:30:44] 2025-10-13 13:30:44,399 [wrapper] Test setup, not cleaning
[2025-10-13 09:30:44] 2025-10-13 13:30:44,404 [wrapper] apfmon messages muted
[2025-10-13 09:30:44] 2025-10-13 13:30:44,409 [wrapper] ==== wrapper stdout END ====
[2025-10-13 09:30:44] 2025-10-13 13:30:44,412 [wrapper] ==== wrapper stderr END ====
[2025-10-13 09:30:44]  *** Error codes and diagnostics ***
[2025-10-13 09:30:44]     "exeErrorCode": 0,
[2025-10-13 09:30:44]     "exeErrorDiag": "",
[2025-10-13 09:30:44]     "pilotErrorCode": 0,
[2025-10-13 09:30:44]     "pilotErrorDiag": "",
[2025-10-13 09:30:44]  *** Listing of results directory ***
[2025-10-13 09:30:44] total 419572
[2025-10-13 09:30:44] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 18:57 pilot3.tar.gz
[2025-10-13 09:30:44] -rwx------. 1 boincer umatlas     36292 Oct 12 19:10 runpilot2-wrapper.sh
[2025-10-13 09:30:44] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 19:10 queuedata.json
[2025-10-13 09:30:44] -rw-r--r--. 1 boincer umatlas       100 Oct 13 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 09:30:44] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 00:00 run_atlas
[2025-10-13 09:30:44] -rw-r--r--. 1 boincer umatlas       105 Oct 13 00:00 job.xml
[2025-10-13 09:30:44] -rw-r--r--. 2 boincer umatlas 221002967 Oct 13 00:01 EVNT.46676267._004647.pool.root.1
[2025-10-13 09:30:44] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:01 start_atlas.sh
[2025-10-13 09:30:44] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 00:01 shared
[2025-10-13 09:30:44] -rw-r--r--. 2 boincer umatlas    569675 Oct 13 00:01 input.tar.gz
[2025-10-13 09:30:44] -rw-r--r--. 1 boincer umatlas         0 Oct 13 00:01 boinc_lockfile
[2025-10-13 09:30:44] -rw-r--r--. 1 boincer umatlas      2549 Oct 13 00:01 pandaJob.out
[2025-10-13 09:30:44] -rw-------. 1 boincer umatlas    974373 Oct 13 00:02 agis_schedconf.cvmfs.json
[2025-10-13 09:30:44] drwx------. 5 boincer umatlas      4096 Oct 13 00:02 pilot3
[2025-10-13 09:30:44] -rw-r--r--. 1 boincer umatlas      6656 Oct 13 09:22 init_data.xml
[2025-10-13 09:30:44] -rw-------. 1 boincer umatlas 195487287 Oct 13 09:29 HITS.46676269._091929.pool.root.1
[2025-10-13 09:30:44] -rw-r--r--. 1 boincer umatlas       530 Oct 13 09:29 boinc_task_state.xml
[2025-10-13 09:30:44] -rw-------. 1 boincer umatlas      1040 Oct 13 09:29 memory_monitor_summary.json
[2025-10-13 09:30:44] -rw-------. 1 boincer umatlas        95 Oct 13 09:29 pilot_heartbeat.json
[2025-10-13 09:30:44] -rw-------. 1 boincer umatlas   1560580 Oct 13 09:30 agis_ddmendpoints.agis.ALL.json
[2025-10-13 09:30:44] -rw-------. 1 boincer umatlas    703068 Oct 13 09:30 log.46676269._091929.job.log.tgz.1
[2025-10-13 09:30:44] -rw-------. 1 boincer umatlas      7822 Oct 13 09:30 heartbeat.json
[2025-10-13 09:30:44] -rw-r--r--. 1 boincer umatlas        27 Oct 13 09:30 wrapper_checkpoint.txt
[2025-10-13 09:30:44] -rw-------. 1 boincer umatlas       823 Oct 13 09:30 pilotlog.txt
[2025-10-13 09:30:44] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 09:30 boinc_mmap_file
[2025-10-13 09:30:44] -rw-------. 1 boincer umatlas   3922369 Oct 13 09:30 log.46676269._091929.job.log.1
[2025-10-13 09:30:44] -rw-------. 1 boincer umatlas       357 Oct 13 09:30 output.list
[2025-10-13 09:30:44] -rw-r--r--. 1 boincer umatlas       620 Oct 13 09:30 runtime_log
[2025-10-13 09:30:44] -rw-------. 1 boincer umatlas   4648960 Oct 13 09:30 result.tar.gz
[2025-10-13 09:30:44] -rw-r--r--. 1 boincer umatlas      8689 Oct 13 09:30 runtime_log.err
[2025-10-13 09:30:44] -rw-------. 1 boincer umatlas       655 Oct 13 09:30 cwZNDmtNKS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm0FVMDmSIPa0m.diag
[2025-10-13 09:30:44] -rw-r--r--. 1 boincer umatlas     21228 Oct 13 09:30 stderr.txt
[2025-10-13 09:30:44] HITS file was successfully produced:
[2025-10-13 09:30:44] -rw-------. 1 boincer umatlas 195487287 Oct 13 09:29 shared/HITS.pool.root.1
[2025-10-13 09:30:44]  *** Contents of shared directory: ***
[2025-10-13 09:30:44] total 411856
[2025-10-13 09:30:44] -rw-r--r--. 2 boincer umatlas 221002967 Oct 13 00:01 ATLAS.root_0
[2025-10-13 09:30:44] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:01 start_atlas.sh
[2025-10-13 09:30:44] -rw-r--r--. 2 boincer umatlas    569675 Oct 13 00:01 input.tar.gz
[2025-10-13 09:30:44] -rw-------. 1 boincer umatlas 195487287 Oct 13 09:29 HITS.pool.root.1
[2025-10-13 09:30:44] -rw-------. 1 boincer umatlas   4648960 Oct 13 09:30 result.tar.gz
09:31:05 (2414633): run_atlas exited; CPU time 52266.301379
09:31:05 (2414633): called boinc_finish(0)

</stderr_txt>
]]>

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