Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:49 (1472763): wrapper (7.7.26015): starting
00:01:49 (1472763): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 00:01:49] Arguments: --nthreads 12
[2025-10-13 00:01:49] Threads: 12
[2025-10-13 00:01:49] Checking for CVMFS
[2025-10-13 00:01:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:01:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:01:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:01:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:01:51] 2.13.2.0 125410 125975 408880 151647 1 196 16501837 32935936 36360 16776704 0 261374545 99.644 242098110 20886 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 00:01:51] CVMFS is ok
[2025-10-13 00:01:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:01:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:01:51] Further information can be found at the LHC@home message board.
[2025-10-13 00:01:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:01:51] Checking for apptainer binary...
[2025-10-13 00:01:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:01:51] Running /usr/bin/apptainer --version
[2025-10-13 00:01:51] apptainer version 1.4.3-1.el9
[2025-10-13 00:01:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:01:51] c6-12-27-1.aglt2.org
[2025-10-13 00:01:51] apptainer works
[2025-10-13 00:01:52] Set ATHENA_PROC_NUMBER=12
[2025-10-13 00:01:52] Set ATHENA_CORE_NUMBER=12
[2025-10-13 00:01:52] Starting ATLAS job with PandaID=6840969118
[2025-10-13 00:01:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 07:19:08]  *** The last 200 lines of the pilot log: ***
[2025-10-13 07:19:08] 2025-10-13 11:18:14,026 | INFO     | sum of deviations: 211010667806.50372
[2025-10-13 07:19:08] 2025-10-13 11:18:14,027 | INFO     | mean x: 1760341297.312941
[2025-10-13 07:19:08] 2025-10-13 11:18:14,027 | INFO     | mean y: 2374255.9811764704
[2025-10-13 07:19:08] 2025-10-13 11:18:14,027 | INFO     | -- intersect: -15602363741.975285
[2025-10-13 07:19:08] 2025-10-13 11:18:14,027 | INFO     | intersect: -15602363741.975285
[2025-10-13 07:19:08] 2025-10-13 11:18:14,028 | INFO     | chi2: 5.771187312630783
[2025-10-13 07:19:08] 2025-10-13 11:18:14,029 | INFO     | sum of square deviations: 22973473866.883358
[2025-10-13 07:19:08] 2025-10-13 11:18:14,034 | INFO     | sum of deviations: 264453160236.1835
[2025-10-13 07:19:08] 2025-10-13 11:18:14,034 | INFO     | mean x: 1760341144.8166666
[2025-10-13 07:19:08] 2025-10-13 11:18:14,034 | INFO     | mean y: 2383999.5738095236
[2025-10-13 07:19:08] 2025-10-13 11:18:14,034 | INFO     | -- intersect: -20261324551.33954
[2025-10-13 07:19:08] 2025-10-13 11:18:14,034 | INFO     | intersect: -20261324551.33954
[2025-10-13 07:19:08] 2025-10-13 11:18:14,035 | INFO     | chi2: 4.210428284254197
[2025-10-13 07:19:08] 2025-10-13 11:18:14,037 | INFO     | current chi2=4.210428284254197 (change=27.04398495194773 %)
[2025-10-13 07:19:08] 2025-10-13 11:18:14,038 | INFO     | sum of square deviations: 22162687607.277252
[2025-10-13 07:19:08] 2025-10-13 11:18:14,043 | INFO     | sum of deviations: 260668303804.3736
[2025-10-13 07:19:08] 2025-10-13 11:18:14,044 | INFO     | mean x: 1760340992.313253
[2025-10-13 07:19:08] 2025-10-13 11:18:14,044 | INFO     | mean y: 2383287.004819277
[2025-10-13 07:19:08] 2025-10-13 11:18:14,044 | INFO     | -- intersect: -20702014515.0439
[2025-10-13 07:19:08] 2025-10-13 11:18:14,044 | INFO     | intersect: -20702014515.0439
[2025-10-13 07:19:08] 2025-10-13 11:18:14,045 | INFO     | chi2: 4.2095465810684844
[2025-10-13 07:19:08] 2025-10-13 11:18:14,045 | INFO     | current chi2=4.2095465810684844 (change=0.02094093821785826 %)
[2025-10-13 07:19:08] 2025-10-13 11:18:14,045 | INFO     | right removable region: 414
[2025-10-13 07:19:08] 2025-10-13 11:18:14,046 | INFO     | sum of square deviations: 22973392736.883354
[2025-10-13 07:19:08] 2025-10-13 11:18:14,050 | INFO     | sum of deviations: 91743987588.18329
[2025-10-13 07:19:08] 2025-10-13 11:18:14,051 | INFO     | mean x: 1760341449.8166666
[2025-10-13 07:19:08] 2025-10-13 11:18:14,051 | INFO     | mean y: 2396136.8595238095
[2025-10-13 07:19:08] 2025-10-13 11:18:14,051 | INFO     | -- intersect: -7027507803.43478
[2025-10-13 07:19:08] 2025-10-13 11:18:14,051 | INFO     | intersect: -7027507803.43478
[2025-10-13 07:19:08] 2025-10-13 11:18:14,052 | INFO     | chi2: 2.621220814413011
[2025-10-13 07:19:08] 2025-10-13 11:18:14,052 | INFO     | current chi2=2.621220814413011 (change=54.58090905009747 %)
[2025-10-13 07:19:08] 2025-10-13 11:18:14,053 | INFO     | sum of square deviations: 22162653691.648228
[2025-10-13 07:19:08] 2025-10-13 11:18:14,058 | INFO     | sum of deviations: 36620377345.68439
[2025-10-13 07:19:08] 2025-10-13 11:18:14,058 | INFO     | mean x: 1760341602.3156626
[2025-10-13 07:19:08] 2025-10-13 11:18:14,058 | INFO     | mean y: 2406502.0024096384
[2025-10-13 07:19:08] 2025-10-13 11:18:14,058 | INFO     | -- intersect: -2906287313.774669
[2025-10-13 07:19:08] 2025-10-13 11:18:14,059 | INFO     | intersect: -2906287313.774669
[2025-10-13 07:19:08] 2025-10-13 11:18:14,059 | INFO     | chi2: 2.006331350075281
[2025-10-13 07:19:08] 2025-10-13 11:18:14,059 | INFO     | current chi2=2.006331350075281 (change=23.458132979743887 %)
[2025-10-13 07:19:08] 2025-10-13 11:18:14,060 | INFO     | left removable region: 20
[2025-10-13 07:19:08] 2025-10-13 11:18:14,060 | INFO     | sum of square deviations: 18965514520.205616
[2025-10-13 07:19:08] 2025-10-13 11:18:14,067 | INFO     | sum of deviations: 30352369797.149754
[2025-10-13 07:19:08] 2025-10-13 11:18:14,068 | INFO     | mean x: 1760341571.819797
[2025-10-13 07:19:08] 2025-10-13 11:18:14,068 | INFO     | mean y: 2428454.621827411
[2025-10-13 07:19:08] 2025-10-13 11:18:14,068 | INFO     | -- intersect: -2814818517.520485
[2025-10-13 07:19:08] 2025-10-13 11:18:14,068 | INFO     | intersect: -2814818517.520485
[2025-10-13 07:19:08] 2025-10-13 11:18:14,069 | INFO     | chi2: 0.030994848267488027
[2025-10-13 07:19:08] 2025-10-13 11:18:14,069 | INFO     | -- intersect: -2814818517.520485
[2025-10-13 07:19:08] 2025-10-13 11:18:14,069 | INFO     | current memory leak: 1.60 B/s (using 394 data points, chi2=0.03)
[2025-10-13 07:19:08] 2025-10-13 11:18:14,075 | INFO     | could have reported an average CPU frequency of 2589 MHz (18 samples)
[2025-10-13 07:19:08] 2025-10-13 11:18:14,075 | INFO     | ..............................
[2025-10-13 07:19:08] 2025-10-13 11:18:14,075 | INFO     | . Timing measurements:
[2025-10-13 07:19:08] 2025-10-13 11:18:14,075 | INFO     | . get job = 0 s
[2025-10-13 07:19:08] 2025-10-13 11:18:14,076 | INFO     | . initial setup = 7 s
[2025-10-13 07:19:08] 2025-10-13 11:18:14,076 | INFO     | . payload setup = 46 s
[2025-10-13 07:19:08] 2025-10-13 11:18:14,076 | INFO     | . stage-in = 0 s
[2025-10-13 07:19:08] 2025-10-13 11:18:14,076 | INFO     | . payload execution = 25920 s
[2025-10-13 07:19:08] 2025-10-13 11:18:14,076 | INFO     | . stage-out = 5 s
[2025-10-13 07:19:08] 2025-10-13 11:18:14,076 | INFO     | . log creation = 0 s
[2025-10-13 07:19:08] 2025-10-13 11:18:14,076 | INFO     | ..............................
[2025-10-13 07:19:08] 2025-10-13 11:18:14,538 | INFO     | 
[2025-10-13 07:19:08] 2025-10-13 11:18:14,539 | INFO     | job summary report
[2025-10-13 07:19:08] 2025-10-13 11:18:14,539 | INFO     | --------------------------------------------------
[2025-10-13 07:19:08] 2025-10-13 11:18:14,539 | INFO     | PanDA job id: 6840969118
[2025-10-13 07:19:08] 2025-10-13 11:18:14,539 | INFO     | task id: 46676269
[2025-10-13 07:19:08] 2025-10-13 11:18:14,539 | INFO     | errors: (none)
[2025-10-13 07:19:08] 2025-10-13 11:18:14,539 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 07:19:08] 2025-10-13 11:18:14,539 | INFO     | pilot state: finished 
[2025-10-13 07:19:08] 2025-10-13 11:18:14,539 | INFO     | transexitcode: 0
[2025-10-13 07:19:08] 2025-10-13 11:18:14,539 | INFO     | exeerrorcode: 0
[2025-10-13 07:19:08] 2025-10-13 11:18:14,539 | INFO     | exeerrordiag: 
[2025-10-13 07:19:08] 2025-10-13 11:18:14,539 | INFO     | exitcode: 0
[2025-10-13 07:19:08] 2025-10-13 11:18:14,539 | INFO     | exitmsg: OK
[2025-10-13 07:19:08] 2025-10-13 11:18:14,540 | INFO     | cpuconsumptiontime: 49566 s
[2025-10-13 07:19:08] 2025-10-13 11:18:14,540 | INFO     | nevents: 400
[2025-10-13 07:19:08] 2025-10-13 11:18:14,540 | INFO     | neventsw: 0
[2025-10-13 07:19:08] 2025-10-13 11:18:14,540 | INFO     | pid: 1511367
[2025-10-13 07:19:08] 2025-10-13 11:18:14,540 | INFO     | pgrp: 1511367
[2025-10-13 07:19:08] 2025-10-13 11:18:14,540 | INFO     | corecount: 12
[2025-10-13 07:19:08] 2025-10-13 11:18:14,540 | INFO     | event service: False
[2025-10-13 07:19:08] 2025-10-13 11:18:14,540 | INFO     | sizes: {0: 2348027, 1: 2348628, 2: 2348712, 3: 2348740, 4: 2348939, 5: 2348967, 6: 2349151, 17: 2349179, 28: 2349207, 39: 2349291, 40: 2349525, 50: 2349833, 25970:
[2025-10-13 07:19:08] 2025-10-13 11:18:14,540 | INFO     | --------------------------------------------------
[2025-10-13 07:19:08] 2025-10-13 11:18:14,540 | INFO     | 
[2025-10-13 07:19:08] 2025-10-13 11:18:14,540 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-10-13 07:19:08] 2025-10-13 11:18:14,660 | INFO     | time since job start (26100s) is within the limit (172800.0s)
[2025-10-13 07:19:08] 2025-10-13 11:18:14,707 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 07:19:08] 2025-10-13 11:18:14,708 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 07:19:08] 2025-10-13 11:18:14,708 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 07:19:08] 2025-10-13 11:18:14,708 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 07:19:08] 2025-10-13 11:18:14,708 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 07:19:08] 2025-10-13 11:18:14,708 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 07:19:08] 2025-10-13 11:18:14,708 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 07:19:08] 2025-10-13 11:18:14,708 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 07:19:08] 2025-10-13 11:18:14,708 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 07:19:08] 2025-10-13 11:18:14,708 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 07:19:08] 2025-10-13 11:18:14,708 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 07:19:08] 2025-10-13 11:18:14,709 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 07:19:08] 2025-10-13 11:18:14,709 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 07:19:08] 2025-10-13 11:18:14,709 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 07:19:08] 2025-10-13 11:18:14,709 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 07:19:08] 2025-10-13 11:18:14,709 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 07:19:08] 2025-10-13 11:18:14,709 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 07:19:08] 2025-10-13 11:18:14,709 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 07:19:08] 2025-10-13 11:18:14,709 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 07:19:08] 2025-10-13 11:18:14,709 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 07:19:08] 2025-10-13 11:18:14,709 | INFO     | job 6840969118 has completed (purged errors)
[2025-10-13 07:19:08] 2025-10-13 11:18:14,710 | INFO     | overall cleanup function is called
[2025-10-13 07:19:08] 2025-10-13 11:18:15,753 | INFO     | --- collectZombieJob: --- 10, [1511367]
[2025-10-13 07:19:08] 2025-10-13 11:18:15,754 | INFO     | zombie collector waiting for pid 1511367
[2025-10-13 07:19:08] 2025-10-13 11:18:15,754 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 07:19:08] 2025-10-13 11:18:15,754 | INFO     | collected zombie processes
[2025-10-13 07:19:08] 2025-10-13 11:18:15,754 | INFO     | will attempt to kill all subprocesses of pid=1511367
[2025-10-13 07:19:08] 2025-10-13 11:18:18,569 | INFO     | PID=1483239 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 07:19:08] 2025-10-13 11:18:18,570 | INFO     | .. there are 41 such processes running
[2025-10-13 07:19:08] 2025-10-13 11:18:18,638 | INFO     | process IDs to be killed: [1511367] (in reverse order)
[2025-10-13 07:19:08] 2025-10-13 11:18:19,019 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 07:19:08] 2025-10-13 11:18:19,020 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 07:19:08] 2025-10-13 11:18:19,109 | INFO     | did not find any defunct processes belonging to 1511367
[2025-10-13 07:19:08] 2025-10-13 11:18:19,216 | INFO     | did not find any defunct processes belonging to 1511367
[2025-10-13 07:19:08] 2025-10-13 11:18:19,217 | INFO     | ready for new job
[2025-10-13 07:19:08] 2025-10-13 11:18:19,217 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 07:19:08] 2025-10-13 11:18:19,220 | INFO     | ***************************************
[2025-10-13 07:19:08] 2025-10-13 11:18:19,220 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 07:19:08] 2025-10-13 11:18:19,220 | INFO     | ***************************************
[2025-10-13 07:19:08] 2025-10-13 11:18:19,220 | INFO     | 
[2025-10-13 07:19:08] 2025-10-13 11:18:19,239 | INFO     | architecture information:
[2025-10-13 07:19:08] 2025-10-13 11:18:19,240 | INFO     | executing command: cat /etc/os-release
[2025-10-13 07:19:08] 2025-10-13 11:18:19,314 | INFO     | cat /etc/os-release:
[2025-10-13 07:19:08] NAME="CentOS Linux"
[2025-10-13 07:19:08] VERSION="7 (Core)"
[2025-10-13 07:19:08] ID="centos"
[2025-10-13 07:19:08] ID_LIKE="rhel fedora"
[2025-10-13 07:19:08] VERSION_ID="7"
[2025-10-13 07:19:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 07:19:08] ANSI_COLOR="0;31"
[2025-10-13 07:19:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 07:19:08] HOME_URL="https://www.centos.org/"
[2025-10-13 07:19:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 07:19:08] 
[2025-10-13 07:19:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 07:19:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 07:19:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 07:19:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 07:19:08] 
[2025-10-13 07:19:08] 2025-10-13 11:18:19,315 | INFO     | ***************************************
[2025-10-13 07:19:08] 2025-10-13 11:18:19,817 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-10-13 07:19:08] 2025-10-13 11:18:19,873 | INFO     | sufficient remaining disk space (94407491584 B)
[2025-10-13 07:19:08] 2025-10-13 11:18:19,873 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 07:19:08] 2025-10-13 11:18:19,874 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 07:19:08] 2025-10-13 11:18:19,874 | INFO     | update_server=False
[2025-10-13 07:19:08] 2025-10-13 11:18:19,874 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 07:19:08] 2025-10-13 11:18:19,874 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 07:19:08] 2025-10-13 11:18:19,885 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:19:08] 2025-10-13 11:18:19,886 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 07:19:08] 2025-10-13 11:18:20,119 | INFO     | all data control threads have been joined
[2025-10-13 07:19:08] 2025-10-13 11:18:20,167 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 07:19:08] 2025-10-13 11:18:20,168 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 07:19:08] 2025-10-13 11:18:20,171 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:19:08] 2025-10-13 11:18:20,172 | INFO     | will abort loop
[2025-10-13 07:19:08] 2025-10-13 11:18:20,573 | INFO     | all payload control threads have been joined
[2025-10-13 07:19:08] 2025-10-13 11:18:20,880 | INFO     | [job] retrieve thread has finished
[2025-10-13 07:19:08] 2025-10-13 11:18:20,891 | INFO     | [job] queue monitor thread has finished
[2025-10-13 07:19:08] 2025-10-13 11:18:20,996 | INFO     | all job control threads have been joined
[2025-10-13 07:19:08] 2025-10-13 11:18:21,125 | INFO     | [data] control thread has finished
[2025-10-13 07:19:08] 2025-10-13 11:18:21,177 | INFO     | [job] job monitor thread has finished
[2025-10-13 07:19:08] 2025-10-13 11:18:21,285 | INFO     | [payload] failed_post thread has finished
[2025-10-13 07:19:08] 2025-10-13 11:18:21,418 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 07:19:08] 2025-10-13 11:18:21,419 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 07:19:08] 2025-10-13 11:18:21,579 | INFO     | [payload] control thread has finished
[2025-10-13 07:19:08] 2025-10-13 11:18:21,793 | INFO     | [payload] validate_post thread has finished
[2025-10-13 07:19:08] 2025-10-13 11:18:21,860 | INFO     | [data] copytool_in thread has finished
[2025-10-13 07:19:08] 2025-10-13 11:18:21,893 | INFO     | [data] copytool_out thread has finished
[2025-10-13 07:19:08] 2025-10-13 11:18:21,948 | INFO     | [job] validate thread has finished
[2025-10-13 07:19:08] 2025-10-13 11:18:22,002 | INFO     | [job] control thread has finished
[2025-10-13 07:19:08] 2025-10-13 11:18:22,098 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 07:19:08] 2025-10-13 11:18:22,174 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 07:19:08] 2025-10-13 11:18:23,892 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 07:19:08] 2025-10-13 11:18:51,489 | INFO     | PID=1483239 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 07:19:08] 2025-10-13 11:18:51,490 | INFO     | .. there are 41 such processes running
[2025-10-13 07:19:08] 2025-10-13 11:18:51,490 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 07:19:08] 2025-10-13 11:18:51,490 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 07:19:08] 2025-10-13 11:18:51,490 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 07:19:08] 2025-10-13 11:19:00,623 | INFO     | [monitor] cgroup control has ended
[2025-10-13 07:19:08] 2025-10-13 11:19:00,738 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139737889797952)>', '<ExcThread(monitor, started 139737163626240)>']
[2025-10-13 07:19:08] 2025-10-13 11:19:01,549 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 07:19:08] 2025-10-13 11:19:01,549 | INFO     | [monitor] control thread has ended
[2025-10-13 07:19:08] 2025-10-13 11:19:05,764 | INFO     | all workflow threads have been joined
[2025-10-13 07:19:08] 2025-10-13 11:19:05,764 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 07:19:08] 2025-10-13 11:19:05,765 | INFO     | traces error code: 0
[2025-10-13 07:19:08] 2025-10-13 11:19:05,765 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 07:19:08] 2025-10-13 11:19:06,692 [wrapper] ==== pilot stdout END ====
[2025-10-13 07:19:08] 2025-10-13 11:19:06,695 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 07:19:08] 2025-10-13 11:19:06,699 [wrapper] pilotpid: 1483239
[2025-10-13 07:19:08] 2025-10-13 11:19:06,702 [wrapper] Pilot exit status: 0
[2025-10-13 07:19:08] 2025-10-13 11:19:06,772 [wrapper] pandaids: 6840969118
[2025-10-13 07:19:08] 2025-10-13 11:19:07,247 [wrapper] cleanup supervisor_pilot 3083787 1483240
[2025-10-13 07:19:08] 2025-10-13 11:19:07,262 [wrapper] Test setup, not cleaning
[2025-10-13 07:19:08] 2025-10-13 11:19:07,289 [wrapper] apfmon messages muted
[2025-10-13 07:19:08] 2025-10-13 11:19:07,348 [wrapper] ==== wrapper stdout END ====
[2025-10-13 07:19:08] 2025-10-13 11:19:07,384 [wrapper] ==== wrapper stderr END ====
[2025-10-13 07:19:08]  *** Error codes and diagnostics ***
[2025-10-13 07:19:08]     "exeErrorCode": 0,
[2025-10-13 07:19:08]     "exeErrorDiag": "",
[2025-10-13 07:19:08]     "pilotErrorCode": 0,
[2025-10-13 07:19:08]     "pilotErrorDiag": "",
[2025-10-13 07:19:08]  *** Listing of results directory ***
[2025-10-13 07:19:08] total 417584
[2025-10-13 07:19:08] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 19:11 pilot3.tar.gz
[2025-10-13 07:19:08] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 19:23 queuedata.json
[2025-10-13 07:19:08] -rwx------. 1 boincer umatlas     36292 Oct 12 19:24 runpilot2-wrapper.sh
[2025-10-13 07:19:08] -rw-r--r--. 1 boincer umatlas       100 Oct 13 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 07:19:08] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 00:01 run_atlas
[2025-10-13 07:19:08] -rw-r--r--. 1 boincer umatlas       105 Oct 13 00:01 job.xml
[2025-10-13 07:19:08] -rw-r--r--. 2 boincer umatlas 222443920 Oct 13 00:01 EVNT.46676267._004654.pool.root.1
[2025-10-13 07:19:08] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:01 start_atlas.sh
[2025-10-13 07:19:08] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 00:01 shared
[2025-10-13 07:19:08] -rw-r--r--. 2 boincer umatlas    569678 Oct 13 00:01 input.tar.gz
[2025-10-13 07:19:08] -rw-r--r--. 1 boincer umatlas         0 Oct 13 00:01 boinc_lockfile
[2025-10-13 07:19:08] -rw-r--r--. 1 boincer umatlas      2549 Oct 13 00:01 pandaJob.out
[2025-10-13 07:19:08] -rw-------. 1 boincer umatlas    974373 Oct 13 00:03 agis_schedconf.cvmfs.json
[2025-10-13 07:19:08] drwx------. 5 boincer umatlas      4096 Oct 13 00:03 pilot3
[2025-10-13 07:19:08] -rw-r--r--. 1 boincer umatlas      6860 Oct 13 07:09 init_data.xml
[2025-10-13 07:19:08] -rw-------. 1 boincer umatlas 193823969 Oct 13 07:15 HITS.46676269._092119.pool.root.1
[2025-10-13 07:19:08] -rw-r--r--. 1 boincer umatlas       530 Oct 13 07:15 boinc_task_state.xml
[2025-10-13 07:19:08] -rw-------. 1 boincer umatlas      1057 Oct 13 07:17 memory_monitor_summary.json
[2025-10-13 07:19:08] -rw-------. 1 boincer umatlas   1560580 Oct 13 07:17 agis_ddmendpoints.agis.ALL.json
[2025-10-13 07:19:08] -rw-------. 1 boincer umatlas    644921 Oct 13 07:17 log.46676269._092119.job.log.tgz.1
[2025-10-13 07:19:08] -rw-------. 1 boincer umatlas        95 Oct 13 07:18 pilot_heartbeat.json
[2025-10-13 07:19:08] -rw-------. 1 boincer umatlas      7848 Oct 13 07:18 heartbeat.json
[2025-10-13 07:19:08] -rw-------. 1 boincer umatlas      5010 Oct 13 07:19 pilotlog.txt
[2025-10-13 07:19:08] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 07:19 boinc_mmap_file
[2025-10-13 07:19:08] -rw-r--r--. 1 boincer umatlas        27 Oct 13 07:19 wrapper_checkpoint.txt
[2025-10-13 07:19:08] -rw-------. 1 boincer umatlas   3069416 Oct 13 07:19 log.46676269._092119.job.log.1
[2025-10-13 07:19:08] -rw-------. 1 boincer umatlas       357 Oct 13 07:19 output.list
[2025-10-13 07:19:08] -rw-r--r--. 1 boincer umatlas       620 Oct 13 07:19 runtime_log
[2025-10-13 07:19:08] -rw-------. 1 boincer umatlas   3737600 Oct 13 07:19 result.tar.gz
[2025-10-13 07:19:08] -rw-------. 1 boincer umatlas       665 Oct 13 07:19 UGmLDmkbKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmc2lNDm502MXm.diag
[2025-10-13 07:19:08] -rw-r--r--. 1 boincer umatlas      8716 Oct 13 07:19 runtime_log.err
[2025-10-13 07:19:08] -rw-r--r--. 1 boincer umatlas     21218 Oct 13 07:19 stderr.txt
[2025-10-13 07:19:08] HITS file was successfully produced:
[2025-10-13 07:19:08] -rw-------. 1 boincer umatlas 193823969 Oct 13 07:15 shared/HITS.pool.root.1
[2025-10-13 07:19:08]  *** Contents of shared directory: ***
[2025-10-13 07:19:08] total 410752
[2025-10-13 07:19:08] -rw-r--r--. 2 boincer umatlas 222443920 Oct 13 00:01 ATLAS.root_0
[2025-10-13 07:19:08] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:01 start_atlas.sh
[2025-10-13 07:19:08] -rw-r--r--. 2 boincer umatlas    569678 Oct 13 00:01 input.tar.gz
[2025-10-13 07:19:08] -rw-------. 1 boincer umatlas 193823969 Oct 13 07:15 HITS.pool.root.1
[2025-10-13 07:19:08] -rw-------. 1 boincer umatlas   3737600 Oct 13 07:19 result.tar.gz
07:19:10 (1472763): run_atlas exited; CPU time 50996.316290
07:19:10 (1472763): called boinc_finish(0)

</stderr_txt>
]]>

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