Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:32 (585315): wrapper (7.7.26015): starting
00:01:32 (585315): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 00:01:32] Arguments: --nthreads 12
[2025-10-13 00:01:32] Threads: 12
[2025-10-13 00:01:32] Checking for CVMFS
[2025-10-13 00:01:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:01:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:01:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:01:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:01:37] 2.13.2.0 1140251 23881 271172 151647 2 449 22275387 40960000 23615 16776704 0 30974053 99.732 24197313 8347 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 00:01:37] CVMFS is ok
[2025-10-13 00:01:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:01:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:01:37] Further information can be found at the LHC@home message board.
[2025-10-13 00:01:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:01:37] Checking for apptainer binary...
[2025-10-13 00:01:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:01:37] Running /usr/bin/apptainer --version
[2025-10-13 00:01:38] apptainer version 1.4.3-1.el9
[2025-10-13 00:01:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:01:40] c7-10-13.aglt2.org
[2025-10-13 00:01:40] apptainer works
[2025-10-13 00:01:40] Set ATHENA_PROC_NUMBER=12
[2025-10-13 00:01:40] Set ATHENA_CORE_NUMBER=12
[2025-10-13 00:01:41] Starting ATLAS job with PandaID=6840961734
[2025-10-13 00:01:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:49:09 (1908040): wrapper (7.7.26015): starting
12:49:09 (1908040): wrapper: running run_atlas (--nthreads 10)
[2025-10-13 12:49:09] Arguments: --nthreads 10
[2025-10-13 12:49:09] Threads: 10
[2025-10-13 12:49:09] This job has been restarted, cleaning up previous attempt
[2025-10-13 12:49:09] Checking for CVMFS
[2025-10-13 12:49:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 12:49:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 12:49:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 12:49:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 12:49:11] 2.13.2.0 1140251 24649 265632 151667 1 282 25754981 40960000 18995 16776704 0 32036737 99.738 24623115 8326 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 12:49:11] CVMFS is ok
[2025-10-13 12:49:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 12:49:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 12:49:11] Further information can be found at the LHC@home message board.
[2025-10-13 12:49:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 12:49:11] Checking for apptainer binary...
[2025-10-13 12:49:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 12:49:11] Running /usr/bin/apptainer --version
[2025-10-13 12:49:11] apptainer version 1.4.3-1.el9
[2025-10-13 12:49:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 12:49:12] c7-10-13.aglt2.org
[2025-10-13 12:49:12] apptainer works
[2025-10-13 12:49:12] Set ATHENA_PROC_NUMBER=10
[2025-10-13 12:49:12] Set ATHENA_CORE_NUMBER=10
[2025-10-13 12:49:12] Starting ATLAS job with PandaID=6840961734
[2025-10-13 12:49:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 05:23:00]  *** The last 200 lines of the pilot log: ***
[2025-10-14 05:23:00] 2025-10-14 09:21:48,765 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 05:23:00] 2025-10-14 09:21:48,765 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 05:23:00] 2025-10-14 09:21:48,809 | INFO     | fitting pss+swap vs Time
[2025-10-14 05:23:00] 2025-10-14 09:21:48,813 | INFO     | sum of square deviations: 286507638628.92474
[2025-10-14 05:23:00] 2025-10-14 09:21:48,923 | INFO     | sum of deviations: 600583511560.2781
[2025-10-14 05:23:00] 2025-10-14 09:21:48,923 | INFO     | mean x: 1760403991.0646818
[2025-10-14 05:23:00] 2025-10-14 09:21:48,924 | INFO     | mean y: 2139134.2813141686
[2025-10-14 05:23:00] 2025-10-14 09:21:48,928 | INFO     | -- intersect: -3688057803.496305
[2025-10-14 05:23:00] 2025-10-14 09:21:48,928 | INFO     | intersect: -3688057803.496305
[2025-10-14 05:23:00] 2025-10-14 09:21:48,931 | INFO     | chi2: 5.3620029249311765
[2025-10-14 05:23:00] 2025-10-14 09:21:48,939 | INFO     | sum of square deviations: 282118426452.524
[2025-10-14 05:23:00] 2025-10-14 09:21:49,051 | INFO     | sum of deviations: 721661921467.6031
[2025-10-14 05:23:00] 2025-10-14 09:21:49,052 | INFO     | mean x: 1760403838.5768833
[2025-10-14 05:23:00] 2025-10-14 09:21:49,052 | INFO     | mean y: 2143329.669762642
[2025-10-14 05:23:00] 2025-10-14 09:21:49,053 | INFO     | -- intersect: -4500988325.646373
[2025-10-14 05:23:00] 2025-10-14 09:21:49,053 | INFO     | intersect: -4500988325.646373
[2025-10-14 05:23:00] 2025-10-14 09:21:49,056 | INFO     | chi2: 3.8582262315109457
[2025-10-14 05:23:00] 2025-10-14 09:21:49,056 | INFO     | current chi2=3.8582262315109457 (change=28.045055447998145 %)
[2025-10-14 05:23:00] 2025-10-14 09:21:49,059 | INFO     | sum of square deviations: 277774048225.02466
[2025-10-14 05:23:00] 2025-10-14 09:21:49,153 | INFO     | sum of deviations: 722795214129.5457
[2025-10-14 05:23:00] 2025-10-14 09:21:49,154 | INFO     | mean x: 1760403686.0850623
[2025-10-14 05:23:00] 2025-10-14 09:21:49,154 | INFO     | mean y: 2143369.3226141077
[2025-10-14 05:23:00] 2025-10-14 09:21:49,154 | INFO     | -- intersect: -4578599026.768738
[2025-10-14 05:23:00] 2025-10-14 09:21:49,154 | INFO     | intersect: -4578599026.768738
[2025-10-14 05:23:00] 2025-10-14 09:21:49,159 | INFO     | chi2: 3.8525995881460364
[2025-10-14 05:23:00] 2025-10-14 09:21:49,160 | INFO     | current chi2=3.8525995881460364 (change=0.14583497771476633 %)
[2025-10-14 05:23:00] 2025-10-14 09:21:49,160 | INFO     | right removable region: 963
[2025-10-14 05:23:00] 2025-10-14 09:21:49,168 | INFO     | sum of square deviations: 282116961838.367
[2025-10-14 05:23:00] 2025-10-14 09:21:49,287 | INFO     | sum of deviations: 383078577576.9867
[2025-10-14 05:23:00] 2025-10-14 09:21:49,288 | INFO     | mean x: 1760404143.5779154
[2025-10-14 05:23:00] 2025-10-14 09:21:49,288 | INFO     | mean y: 2146683.9339525285
[2025-10-14 05:23:00] 2025-10-14 09:21:49,288 | INFO     | -- intersect: -2388255902.596202
[2025-10-14 05:23:00] 2025-10-14 09:21:49,288 | INFO     | intersect: -2388255902.596202
[2025-10-14 05:23:00] 2025-10-14 09:21:49,296 | INFO     | chi2: 2.8585163603351718
[2025-10-14 05:23:00] 2025-10-14 09:21:49,296 | INFO     | current chi2=2.8585163603351718 (change=46.689391998571836 %)
[2025-10-14 05:23:00] 2025-10-14 09:21:49,303 | INFO     | sum of square deviations: 277771414529.149
[2025-10-14 05:23:00] 2025-10-14 09:21:49,437 | INFO     | sum of deviations: 263931331330.02475
[2025-10-14 05:23:00] 2025-10-14 09:21:49,437 | INFO     | mean x: 1760404296.090249
[2025-10-14 05:23:00] 2025-10-14 09:21:49,437 | INFO     | mean y: 2150864.8962655603
[2025-10-14 05:23:00] 2025-10-14 09:21:49,437 | INFO     | -- intersect: -1670540510.9740088
[2025-10-14 05:23:00] 2025-10-14 09:21:49,438 | INFO     | intersect: -1670540510.9740088
[2025-10-14 05:23:00] 2025-10-14 09:21:49,445 | INFO     | chi2: 2.1860698674070336
[2025-10-14 05:23:00] 2025-10-14 09:21:49,445 | INFO     | current chi2=2.1860698674070336 (change=23.524318498190837 %)
[2025-10-14 05:23:00] 2025-10-14 09:21:49,445 | INFO     | left removable region: 20
[2025-10-14 05:23:00] 2025-10-14 09:21:49,448 | INFO     | sum of square deviations: 260010142159.04742
[2025-10-14 05:23:00] 2025-10-14 09:21:49,547 | INFO     | sum of deviations: 304058876756.4497
[2025-10-14 05:23:00] 2025-10-14 09:21:49,547 | INFO     | mean x: 1760404265.633086
[2025-10-14 05:23:00] 2025-10-14 09:21:49,547 | INFO     | mean y: 2158368.498409332
[2025-10-14 05:23:00] 2025-10-14 09:21:49,547 | INFO     | -- intersect: -2056478803.1171422
[2025-10-14 05:23:00] 2025-10-14 09:21:49,548 | INFO     | intersect: -2056478803.1171422
[2025-10-14 05:23:00] 2025-10-14 09:21:49,551 | INFO     | chi2: 0.41584510157823285
[2025-10-14 05:23:00] 2025-10-14 09:21:49,551 | INFO     | -- intersect: -2056478803.1171422
[2025-10-14 05:23:00] 2025-10-14 09:21:49,551 | INFO     | current memory leak: 1.17 B/s (using 943 data points, chi2=0.42)
[2025-10-14 05:23:00] 2025-10-14 09:21:49,553 | INFO     | could have reported an average CPU frequency of 3291 MHz (35 samples)
[2025-10-14 05:23:00] 2025-10-14 09:21:49,553 | INFO     | ..............................
[2025-10-14 05:23:00] 2025-10-14 09:21:49,553 | INFO     | . Timing measurements:
[2025-10-14 05:23:00] 2025-10-14 09:21:49,554 | INFO     | . get job = 0 s
[2025-10-14 05:23:00] 2025-10-14 09:21:49,554 | INFO     | . initial setup = 5 s
[2025-10-14 05:23:00] 2025-10-14 09:21:49,554 | INFO     | . payload setup = 31 s
[2025-10-14 05:23:00] 2025-10-14 09:21:49,554 | INFO     | . stage-in = 0 s
[2025-10-14 05:23:00] 2025-10-14 09:21:49,554 | INFO     | . payload execution = 59396 s
[2025-10-14 05:23:00] 2025-10-14 09:21:49,554 | INFO     | . stage-out = 4 s
[2025-10-14 05:23:00] 2025-10-14 09:21:49,554 | INFO     | . log creation = 1 s
[2025-10-14 05:23:00] 2025-10-14 09:21:49,555 | INFO     | ..............................
[2025-10-14 05:23:00] 2025-10-14 09:21:49,870 | INFO     | time since job start (59507s) is within the limit (172800.0s)
[2025-10-14 05:23:00] 2025-10-14 09:21:49,965 | INFO     | 
[2025-10-14 05:23:00] 2025-10-14 09:21:49,966 | INFO     | job summary report
[2025-10-14 05:23:00] 2025-10-14 09:21:49,967 | INFO     | --------------------------------------------------
[2025-10-14 05:23:00] 2025-10-14 09:21:49,967 | INFO     | PanDA job id: 6840961734
[2025-10-14 05:23:00] 2025-10-14 09:21:49,967 | INFO     | task id: 46676269
[2025-10-14 05:23:00] 2025-10-14 09:21:49,967 | INFO     | errors: (none)
[2025-10-14 05:23:00] 2025-10-14 09:21:49,971 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 05:23:00] 2025-10-14 09:21:49,972 | INFO     | pilot state: finished 
[2025-10-14 05:23:00] 2025-10-14 09:21:49,972 | INFO     | transexitcode: 0
[2025-10-14 05:23:00] 2025-10-14 09:21:49,972 | INFO     | exeerrorcode: 0
[2025-10-14 05:23:00] 2025-10-14 09:21:49,972 | INFO     | exeerrordiag: 
[2025-10-14 05:23:00] 2025-10-14 09:21:49,972 | INFO     | exitcode: 0
[2025-10-14 05:23:00] 2025-10-14 09:21:49,972 | INFO     | exitmsg: OK
[2025-10-14 05:23:00] 2025-10-14 09:21:49,973 | INFO     | cpuconsumptiontime: 105389 s
[2025-10-14 05:23:00] 2025-10-14 09:21:49,973 | INFO     | nevents: 400
[2025-10-14 05:23:00] 2025-10-14 09:21:49,973 | INFO     | neventsw: 0
[2025-10-14 05:23:00] 2025-10-14 09:21:49,973 | INFO     | pid: 1940344
[2025-10-14 05:23:00] 2025-10-14 09:21:49,973 | INFO     | pgrp: 1940344
[2025-10-14 05:23:00] 2025-10-14 09:21:49,973 | INFO     | corecount: 10
[2025-10-14 05:23:00] 2025-10-14 09:21:49,974 | INFO     | event service: False
[2025-10-14 05:23:00] 2025-10-14 09:21:49,974 | INFO     | sizes: {0: 2348029, 1: 2348714, 2: 2348913, 3: 2348941, 14: 2348941, 24: 2349231, 25: 2349387, 59428: 2399517, 59429: 2399516, 59433: 2408570, 59436: 2408626, 5945
[2025-10-14 05:23:00] 2025-10-14 09:21:49,974 | INFO     | --------------------------------------------------
[2025-10-14 05:23:00] 2025-10-14 09:21:49,974 | INFO     | 
[2025-10-14 05:23:00] 2025-10-14 09:21:49,974 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-10-14 05:23:00] 2025-10-14 09:21:50,024 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 05:23:00] 2025-10-14 09:21:50,025 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 05:23:00] 2025-10-14 09:21:50,025 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 05:23:00] 2025-10-14 09:21:50,025 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 05:23:00] 2025-10-14 09:21:50,025 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 05:23:00] 2025-10-14 09:21:50,026 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 05:23:00] 2025-10-14 09:21:50,026 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 05:23:00] 2025-10-14 09:21:50,026 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 05:23:00] 2025-10-14 09:21:50,026 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 05:23:00] 2025-10-14 09:21:50,026 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 05:23:00] 2025-10-14 09:21:50,026 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 05:23:00] 2025-10-14 09:21:50,026 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 05:23:00] 2025-10-14 09:21:50,027 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 05:23:00] 2025-10-14 09:21:50,027 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 05:23:00] 2025-10-14 09:21:50,027 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 05:23:00] 2025-10-14 09:21:50,027 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 05:23:00] 2025-10-14 09:21:50,027 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 05:23:00] 2025-10-14 09:21:50,028 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 05:23:00] 2025-10-14 09:21:50,028 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 05:23:00] 2025-10-14 09:21:50,028 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 05:23:00] 2025-10-14 09:21:50,029 | INFO     | job 6840961734 has completed (purged errors)
[2025-10-14 05:23:00] 2025-10-14 09:21:50,029 | INFO     | overall cleanup function is called
[2025-10-14 05:23:00] 2025-10-14 09:21:51,047 | INFO     | --- collectZombieJob: --- 10, [1940344]
[2025-10-14 05:23:00] 2025-10-14 09:21:51,047 | INFO     | zombie collector waiting for pid 1940344
[2025-10-14 05:23:00] 2025-10-14 09:21:51,047 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 05:23:00] 2025-10-14 09:21:51,048 | INFO     | collected zombie processes
[2025-10-14 05:23:00] 2025-10-14 09:21:51,048 | INFO     | will attempt to kill all subprocesses of pid=1940344
[2025-10-14 05:23:00] 2025-10-14 09:21:51,873 | INFO     | process IDs to be killed: [1940344] (in reverse order)
[2025-10-14 05:23:00] 2025-10-14 09:21:52,179 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 05:23:00] 2025-10-14 09:21:52,179 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 05:23:00] 2025-10-14 09:21:52,218 | INFO     | did not find any defunct processes belonging to 1940344
[2025-10-14 05:23:00] 2025-10-14 09:21:52,259 | INFO     | did not find any defunct processes belonging to 1940344
[2025-10-14 05:23:00] 2025-10-14 09:21:52,259 | INFO     | ready for new job
[2025-10-14 05:23:00] 2025-10-14 09:21:52,260 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 05:23:00] 2025-10-14 09:21:52,268 | INFO     | ***************************************
[2025-10-14 05:23:00] 2025-10-14 09:21:52,268 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 05:23:00] 2025-10-14 09:21:52,269 | INFO     | ***************************************
[2025-10-14 05:23:00] 2025-10-14 09:21:52,269 | INFO     | 
[2025-10-14 05:23:00] 2025-10-14 09:21:52,305 | INFO     | architecture information:
[2025-10-14 05:23:00] 2025-10-14 09:21:52,310 | INFO     | executing command: cat /etc/os-release
[2025-10-14 05:23:00] 2025-10-14 09:21:52,469 | INFO     | cat /etc/os-release:
[2025-10-14 05:23:00] NAME="CentOS Linux"
[2025-10-14 05:23:00] VERSION="7 (Core)"
[2025-10-14 05:23:00] ID="centos"
[2025-10-14 05:23:00] ID_LIKE="rhel fedora"
[2025-10-14 05:23:00] VERSION_ID="7"
[2025-10-14 05:23:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 05:23:00] ANSI_COLOR="0;31"
[2025-10-14 05:23:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 05:23:00] HOME_URL="https://www.centos.org/"
[2025-10-14 05:23:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 05:23:00] 
[2025-10-14 05:23:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 05:23:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 05:23:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 05:23:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 05:23:00] 
[2025-10-14 05:23:00] 2025-10-14 09:21:52,469 | INFO     | ***************************************
[2025-10-14 05:23:00] 2025-10-14 09:21:52,972 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-14 05:23:00] 2025-10-14 09:21:53,016 | INFO     | sufficient remaining disk space (86467674112 B)
[2025-10-14 05:23:00] 2025-10-14 09:21:53,016 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 05:23:00] 2025-10-14 09:21:53,017 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 05:23:00] 2025-10-14 09:21:53,017 | INFO     | update_server=False
[2025-10-14 05:23:00] 2025-10-14 09:21:53,017 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 05:23:00] 2025-10-14 09:21:53,081 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 05:23:00] 2025-10-14 09:21:53,750 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 05:23:00] 2025-10-14 09:21:53,751 | INFO     | aborting loop
[2025-10-14 05:23:00] 2025-10-14 09:21:53,997 | INFO     | all data control threads have been joined
[2025-10-14 05:23:00] 2025-10-14 09:21:54,022 | INFO     | [job] retrieve thread has finished
[2025-10-14 05:23:00] 2025-10-14 09:21:54,127 | INFO     | all payload control threads have been joined
[2025-10-14 05:23:00] 2025-10-14 09:21:54,208 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 05:23:00] 2025-10-14 09:21:54,226 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 05:23:00] 2025-10-14 09:21:54,269 | INFO     | all job control threads have been joined
[2025-10-14 05:23:00] 2025-10-14 09:21:54,304 | INFO     | [job] validate thread has finished
[2025-10-14 05:23:00] 2025-10-14 09:21:54,415 | INFO     | [data] copytool_in thread has finished
[2025-10-14 05:23:00] 2025-10-14 09:21:54,713 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 05:23:00] 2025-10-14 09:21:54,756 | INFO     | [job] job monitor thread has finished
[2025-10-14 05:23:00] 2025-10-14 09:21:54,889 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 05:23:00] 2025-10-14 09:21:54,978 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 05:23:00] 2025-10-14 09:21:55,003 | INFO     | [data] control thread has finished
[2025-10-14 05:23:00] 2025-10-14 09:21:55,020 | INFO     | [payload] failed_post thread has finished
[2025-10-14 05:23:00] 2025-10-14 09:21:55,090 | INFO     | [data] copytool_out thread has finished
[2025-10-14 05:23:00] 2025-10-14 09:21:55,134 | INFO     | [payload] control thread has finished
[2025-10-14 05:23:00] 2025-10-14 09:21:55,161 | INFO     | [payload] validate_post thread has finished
[2025-10-14 05:23:00] 2025-10-14 09:21:55,276 | INFO     | [job] control thread has finished
[2025-10-14 05:23:00] 2025-10-14 09:21:55,887 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 05:23:00] 2025-10-14 09:21:55,985 | INFO     | [job] queue monitor thread has finished
[2025-10-14 05:23:00] 2025-10-14 09:21:59,898 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 05:23:00] 2025-10-14 09:22:23,801 | INFO     | PID=1919166 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 05:23:00] 2025-10-14 09:22:23,802 | INFO     | .. there are 22 such processes running
[2025-10-14 05:23:00] 2025-10-14 09:22:23,802 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 05:23:00] 2025-10-14 09:22:23,802 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 05:23:00] 2025-10-14 09:22:23,802 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 05:23:00] 2025-10-14 09:22:52,050 | INFO     | [monitor] cgroup control has ended
[2025-10-14 05:23:00] 2025-10-14 09:22:53,498 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140546055595840)>', '<ExcThread(monitor, started 140545280173824)>']
[2025-10-14 05:23:00] 2025-10-14 09:22:53,986 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 05:23:00] 2025-10-14 09:22:53,986 | INFO     | [monitor] control thread has ended
[2025-10-14 05:23:00] 2025-10-14 09:22:58,524 | INFO     | all workflow threads have been joined
[2025-10-14 05:23:00] 2025-10-14 09:22:58,525 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 05:23:00] 2025-10-14 09:22:58,527 | INFO     | traces error code: 0
[2025-10-14 05:23:00] 2025-10-14 09:22:58,527 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 05:23:00] 2025-10-14 09:22:59,074 [wrapper] ==== pilot stdout END ====
[2025-10-14 05:23:00] 2025-10-14 09:22:59,092 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 05:23:00] 2025-10-14 09:22:59,101 [wrapper] pilotpid: 1919166
[2025-10-14 05:23:00] 2025-10-14 09:22:59,108 [wrapper] Pilot exit status: 0
[2025-10-14 05:23:00] 2025-10-14 09:22:59,296 [wrapper] pandaids: 6840961734 6840961734
[2025-10-14 05:23:00] 2025-10-14 09:22:59,629 [wrapper] cleanup supervisor_pilot 3627527 1919167
[2025-10-14 05:23:00] 2025-10-14 09:22:59,637 [wrapper] Test setup, not cleaning
[2025-10-14 05:23:00] 2025-10-14 09:22:59,648 [wrapper] apfmon messages muted
[2025-10-14 05:23:00] 2025-10-14 09:22:59,654 [wrapper] ==== wrapper stdout END ====
[2025-10-14 05:23:00] 2025-10-14 09:22:59,664 [wrapper] ==== wrapper stderr END ====
[2025-10-14 05:23:00]  *** Error codes and diagnostics ***
[2025-10-14 05:23:00]     "exeErrorCode": 0,
[2025-10-14 05:23:00]     "exeErrorDiag": "",
[2025-10-14 05:23:00]     "pilotErrorCode": 0,
[2025-10-14 05:23:00]     "pilotErrorDiag": "",
[2025-10-14 05:23:00]  *** Listing of results directory ***
[2025-10-14 05:23:00] total 638204
[2025-10-14 05:23:00] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-14 05:23:00] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 19:11 pilot3.tar.gz
[2025-10-14 05:23:00] -rwx------. 1 boincer umatlas     36292 Oct 12 19:13 runpilot2-wrapper.sh
[2025-10-14 05:23:00] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 19:13 queuedata.json
[2025-10-14 05:23:00] -rw-r--r--. 1 boincer umatlas       100 Oct 13 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 05:23:00] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 00:01 run_atlas
[2025-10-14 05:23:00] -rw-r--r--. 1 boincer umatlas       105 Oct 13 00:01 job.xml
[2025-10-14 05:23:00] -rw-r--r--. 3 boincer umatlas 219689448 Oct 13 00:01 EVNT.46676267._004649.pool.root.1
[2025-10-14 05:23:00] -rw-r--r--. 3 boincer umatlas 219689448 Oct 13 00:01 ATLAS.root_0
[2025-10-14 05:23:00] -rw-r--r--. 2 boincer umatlas    569676 Oct 13 00:01 input.tar.gz
[2025-10-14 05:23:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:01 start_atlas.sh
[2025-10-14 05:23:00] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 00:01 shared
[2025-10-14 05:23:00] -rw-r--r--. 1 boincer umatlas         0 Oct 13 00:01 boinc_lockfile
[2025-10-14 05:23:00] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 12:49 pandaJob.out
[2025-10-14 05:23:00] -rw-------. 1 boincer umatlas    972783 Oct 13 12:49 agis_schedconf.cvmfs.json
[2025-10-14 05:23:00] -rw-r--r--. 1 boincer umatlas      6899 Oct 14 05:19 init_data.xml
[2025-10-14 05:23:00] -rw-------. 1 boincer umatlas 195251797 Oct 14 05:19 HITS.46676269._091993.pool.root.1
[2025-10-14 05:23:00] -rw-r--r--. 1 boincer umatlas       532 Oct 14 05:19 boinc_task_state.xml
[2025-10-14 05:23:00] -rw-------. 1 boincer umatlas      1044 Oct 14 05:21 memory_monitor_summary.json
[2025-10-14 05:23:00] -rw-------. 1 boincer umatlas   1560580 Oct 14 05:21 agis_ddmendpoints.agis.ALL.json
[2025-10-14 05:23:00] -rw-------. 1 boincer umatlas   1018791 Oct 14 05:21 log.46676269._091993.job.log.tgz.1
[2025-10-14 05:23:00] -rw-------. 1 boincer umatlas        96 Oct 14 05:21 pilot_heartbeat.json
[2025-10-14 05:23:00] -rw-------. 1 boincer umatlas      7784 Oct 14 05:21 heartbeat.json
[2025-10-14 05:23:00] -rw-------. 1 boincer umatlas      4824 Oct 14 05:22 pilotlog.txt
[2025-10-14 05:23:00] -rw-r--r--. 1 boincer umatlas      8192 Oct 14 05:22 boinc_mmap_file
[2025-10-14 05:23:00] -rw-r--r--. 1 boincer umatlas        29 Oct 14 05:22 wrapper_checkpoint.txt
[2025-10-14 05:23:00] -rw-------. 1 boincer umatlas   6472558 Oct 14 05:22 log.46676269._091993.job.log.1
[2025-10-14 05:23:00] -rw-------. 1 boincer umatlas       357 Oct 14 05:22 output.list
[2025-10-14 05:23:00] -rw-r--r--. 1 boincer umatlas       620 Oct 14 05:23 runtime_log
[2025-10-14 05:23:00] -rw-------. 1 boincer umatlas   7505920 Oct 14 05:23 result.tar.gz
[2025-10-14 05:23:00] -rw-r--r--. 1 boincer umatlas      8791 Oct 14 05:23 runtime_log.err
[2025-10-14 05:23:00] -rw-------. 1 boincer umatlas       785 Oct 14 05:23 nzQODmFRKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmU0lNDmDjRKrn.diag
[2025-10-14 05:23:00] -rw-r--r--. 1 boincer umatlas     23231 Oct 14 05:23 stderr.txt
[2025-10-14 05:23:00] HITS file was successfully produced:
[2025-10-14 05:23:00] -rw-------. 1 boincer umatlas 195251797 Oct 14 05:19 shared/HITS.pool.root.1
[2025-10-14 05:23:00]  *** Contents of shared directory: ***
[2025-10-14 05:23:00] total 413136
[2025-10-14 05:23:00] -rw-r--r--. 3 boincer umatlas 219689448 Oct 13 00:01 ATLAS.root_0
[2025-10-14 05:23:00] -rw-r--r--. 2 boincer umatlas    569676 Oct 13 00:01 input.tar.gz
[2025-10-14 05:23:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:01 start_atlas.sh
[2025-10-14 05:23:00] -rw-------. 1 boincer umatlas 195251797 Oct 14 05:19 HITS.pool.root.1
[2025-10-14 05:23:00] -rw-------. 1 boincer umatlas   7505920 Oct 14 05:23 result.tar.gz
05:23:02 (1908040): run_atlas exited; CPU time 107558.590566
05:23:02 (1908040): called boinc_finish(0)

</stderr_txt>
]]>

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