Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:20 (1392692): wrapper (7.7.26015): starting
00:02:20 (1392692): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 00:02:20] Arguments: --nthreads 12
[2025-10-13 00:02:20] Threads: 12
[2025-10-13 00:02:20] Checking for CVMFS
[2025-10-13 00:02:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:02:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:02:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:02:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:02:21] 2.13.2.0 128637 116910 205088 151647 3 89 28334429 39288833 9881 16776704 1 79891755 99.636 77626583 36536 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 00:02:21] CVMFS is ok
[2025-10-13 00:02:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:02:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:02:21] Further information can be found at the LHC@home message board.
[2025-10-13 00:02:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:02:21] Checking for apptainer binary...
[2025-10-13 00:02:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:02:21] Running /usr/bin/apptainer --version
[2025-10-13 00:02:21] apptainer version 1.4.3-1.el9
[2025-10-13 00:02:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:02:22] c-211-17.aglt2.org
[2025-10-13 00:02:22] apptainer works
[2025-10-13 00:02:22] Set ATHENA_PROC_NUMBER=12
[2025-10-13 00:02:22] Set ATHENA_CORE_NUMBER=12
[2025-10-13 00:02:22] Starting ATLAS job with PandaID=6840850811
[2025-10-13 00:02:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 12:01:03]  *** The last 200 lines of the pilot log: ***
[2025-10-13 12:01:03] 2025-10-13 16:00:15,796 | INFO     | -- intersect: -24939511776.983288
[2025-10-13 12:01:03] 2025-10-13 16:00:15,797 | INFO     | intersect: -24939511776.983288
[2025-10-13 12:01:03] 2025-10-13 16:00:15,798 | INFO     | chi2: 12.289896645883088
[2025-10-13 12:01:03] 2025-10-13 16:00:15,799 | INFO     | sum of square deviations: 105447108818.947
[2025-10-13 12:01:03] 2025-10-13 16:00:15,813 | INFO     | sum of deviations: 1560996773281.159
[2025-10-13 12:01:03] 2025-10-13 16:00:15,814 | INFO     | mean x: 1760349611.0931232
[2025-10-13 12:01:03] 2025-10-13 16:00:15,814 | INFO     | mean y: 2572126.3667621776
[2025-10-13 12:01:03] 2025-10-13 16:00:15,814 | INFO     | -- intersect: -26056938594.60768
[2025-10-13 12:01:03] 2025-10-13 16:00:15,814 | INFO     | intersect: -26056938594.60768
[2025-10-13 12:01:03] 2025-10-13 16:00:15,815 | INFO     | chi2: 11.57673066446724
[2025-10-13 12:01:03] 2025-10-13 16:00:15,815 | INFO     | current chi2=11.57673066446724 (change=5.802863945603212 %)
[2025-10-13 12:01:03] 2025-10-13 16:00:15,815 | INFO     | right removable region: 697
[2025-10-13 12:01:03] 2025-10-13 16:00:15,816 | INFO     | sum of square deviations: 105446430498.94707
[2025-10-13 12:01:03] 2025-10-13 16:00:15,829 | INFO     | sum of deviations: 1303341437361.6519
[2025-10-13 12:01:03] 2025-10-13 16:00:15,830 | INFO     | mean x: 1760349916.0931232
[2025-10-13 12:01:03] 2025-10-13 16:00:15,830 | INFO     | mean y: 2584727.9899713467
[2025-10-13 12:01:03] 2025-10-13 16:00:15,830 | INFO     | -- intersect: -21755733491.451176
[2025-10-13 12:01:03] 2025-10-13 16:00:15,830 | INFO     | intersect: -21755733491.451176
[2025-10-13 12:01:03] 2025-10-13 16:00:15,831 | INFO     | chi2: 8.854544556202889
[2025-10-13 12:01:03] 2025-10-13 16:00:15,831 | INFO     | current chi2=8.854544556202889 (change=27.95265239948934 %)
[2025-10-13 12:01:03] 2025-10-13 16:00:15,832 | INFO     | sum of square deviations: 103196221709.87299
[2025-10-13 12:01:03] 2025-10-13 16:00:15,845 | INFO     | sum of deviations: 1109067649346.1274
[2025-10-13 12:01:03] 2025-10-13 16:00:15,845 | INFO     | mean x: 1760350068.6031747
[2025-10-13 12:01:03] 2025-10-13 16:00:15,846 | INFO     | mean y: 2597893.124098124
[2025-10-13 12:01:03] 2025-10-13 16:00:15,846 | INFO     | -- intersect: -18916188863.43825
[2025-10-13 12:01:03] 2025-10-13 16:00:15,846 | INFO     | intersect: -18916188863.43825
[2025-10-13 12:01:03] 2025-10-13 16:00:15,847 | INFO     | chi2: 6.405443711600492
[2025-10-13 12:01:03] 2025-10-13 16:00:15,847 | INFO     | current chi2=6.405443711600492 (change=27.65925259122135 %)
[2025-10-13 12:01:03] 2025-10-13 16:00:15,848 | INFO     | sum of square deviations: 100978246449.15707
[2025-10-13 12:01:03] 2025-10-13 16:00:15,861 | INFO     | sum of deviations: 937614607712.6069
[2025-10-13 12:01:03] 2025-10-13 16:00:15,861 | INFO     | mean x: 1760350221.113372
[2025-10-13 12:01:03] 2025-10-13 16:00:15,861 | INFO     | mean y: 2609680.4665697673
[2025-10-13 12:01:03] 2025-10-13 16:00:15,861 | INFO     | -- intersect: -16342792820.032024
[2025-10-13 12:01:03] 2025-10-13 16:00:15,861 | INFO     | intersect: -16342792820.032024
[2025-10-13 12:01:03] 2025-10-13 16:00:15,862 | INFO     | chi2: 4.556370754437546
[2025-10-13 12:01:03] 2025-10-13 16:00:15,863 | INFO     | current chi2=4.556370754437546 (change=28.867211085068284 %)
[2025-10-13 12:01:03] 2025-10-13 16:00:15,864 | INFO     | sum of square deviations: 98792439543.26215
[2025-10-13 12:01:03] 2025-10-13 16:00:15,876 | INFO     | sum of deviations: 801940728865.6539
[2025-10-13 12:01:03] 2025-10-13 16:00:15,876 | INFO     | mean x: 1760350373.6178625
[2025-10-13 12:01:03] 2025-10-13 16:00:15,876 | INFO     | mean y: 2619142.159590044
[2025-10-13 12:01:03] 2025-10-13 16:00:15,877 | INFO     | -- intersect: -14286902082.385529
[2025-10-13 12:01:03] 2025-10-13 16:00:15,877 | INFO     | intersect: -14286902082.385529
[2025-10-13 12:01:03] 2025-10-13 16:00:15,878 | INFO     | chi2: 3.439933571334923
[2025-10-13 12:01:03] 2025-10-13 16:00:15,878 | INFO     | current chi2=3.439933571334923 (change=24.502773002291374 %)
[2025-10-13 12:01:03] 2025-10-13 16:00:15,878 | INFO     | left removable region: 40
[2025-10-13 12:01:03] 2025-10-13 16:00:15,879 | INFO     | sum of square deviations: 87933148730.0
[2025-10-13 12:01:03] 2025-10-13 16:00:15,891 | INFO     | sum of deviations: 516708605818.66656
[2025-10-13 12:01:03] 2025-10-13 16:00:15,891 | INFO     | mean x: 1760350800.6666667
[2025-10-13 12:01:03] 2025-10-13 16:00:15,891 | INFO     | mean y: 2645456.208523592
[2025-10-13 12:01:03] 2025-10-13 16:00:15,891 | INFO     | -- intersect: -10341444583.796198
[2025-10-13 12:01:03] 2025-10-13 16:00:15,891 | INFO     | intersect: -10341444583.796198
[2025-10-13 12:01:03] 2025-10-13 16:00:15,892 | INFO     | chi2: 1.2792651256416878
[2025-10-13 12:01:03] 2025-10-13 16:00:15,893 | INFO     | -- intersect: -10341444583.796198
[2025-10-13 12:01:03] 2025-10-13 16:00:15,893 | INFO     | current memory leak: 5.88 B/s (using 657 data points, chi2=1.28)
[2025-10-13 12:01:03] 2025-10-13 16:00:15,894 | INFO     | could have reported an average CPU frequency of 2600 MHz (27 samples)
[2025-10-13 12:01:03] 2025-10-13 16:00:15,894 | INFO     | ..............................
[2025-10-13 12:01:03] 2025-10-13 16:00:15,894 | INFO     | . Timing measurements:
[2025-10-13 12:01:03] 2025-10-13 16:00:15,894 | INFO     | . get job = 0 s
[2025-10-13 12:01:03] 2025-10-13 16:00:15,894 | INFO     | . initial setup = 5 s
[2025-10-13 12:01:03] 2025-10-13 16:00:15,894 | INFO     | . payload setup = 44 s
[2025-10-13 12:01:03] 2025-10-13 16:00:15,894 | INFO     | . stage-in = 0 s
[2025-10-13 12:01:03] 2025-10-13 16:00:15,895 | INFO     | . payload execution = 42883 s
[2025-10-13 12:01:03] 2025-10-13 16:00:15,895 | INFO     | . stage-out = 3 s
[2025-10-13 12:01:03] 2025-10-13 16:00:15,895 | INFO     | . log creation = 0 s
[2025-10-13 12:01:03] 2025-10-13 16:00:15,895 | INFO     | ..............................
[2025-10-13 12:01:03] 2025-10-13 16:00:16,009 | INFO     | 
[2025-10-13 12:01:03] 2025-10-13 16:00:16,009 | INFO     | job summary report
[2025-10-13 12:01:03] 2025-10-13 16:00:16,009 | INFO     | --------------------------------------------------
[2025-10-13 12:01:03] 2025-10-13 16:00:16,009 | INFO     | PanDA job id: 6840850811
[2025-10-13 12:01:03] 2025-10-13 16:00:16,009 | INFO     | task id: 46676269
[2025-10-13 12:01:03] 2025-10-13 16:00:16,009 | INFO     | errors: (none)
[2025-10-13 12:01:03] 2025-10-13 16:00:16,010 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 12:01:03] 2025-10-13 16:00:16,010 | INFO     | pilot state: finished 
[2025-10-13 12:01:03] 2025-10-13 16:00:16,010 | INFO     | transexitcode: 0
[2025-10-13 12:01:03] 2025-10-13 16:00:16,010 | INFO     | exeerrorcode: 0
[2025-10-13 12:01:03] 2025-10-13 16:00:16,010 | INFO     | exeerrordiag: 
[2025-10-13 12:01:03] 2025-10-13 16:00:16,010 | INFO     | exitcode: 0
[2025-10-13 12:01:03] 2025-10-13 16:00:16,010 | INFO     | exitmsg: OK
[2025-10-13 12:01:03] 2025-10-13 16:00:16,010 | INFO     | cpuconsumptiontime: 53469 s
[2025-10-13 12:01:03] 2025-10-13 16:00:16,010 | INFO     | nevents: 400
[2025-10-13 12:01:03] 2025-10-13 16:00:16,010 | INFO     | neventsw: 0
[2025-10-13 12:01:03] 2025-10-13 16:00:16,011 | INFO     | pid: 1407477
[2025-10-13 12:01:03] 2025-10-13 16:00:16,011 | INFO     | pgrp: 1407477
[2025-10-13 12:01:03] 2025-10-13 16:00:16,011 | INFO     | corecount: 12
[2025-10-13 12:01:03] 2025-10-13 16:00:16,011 | INFO     | event service: False
[2025-10-13 12:01:03] 2025-10-13 16:00:16,011 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 23: 2349203, 42932: 2392337, 42936: 2401335, 42938: 2401519, 42949: 2401713}
[2025-10-13 12:01:03] 2025-10-13 16:00:16,011 | INFO     | --------------------------------------------------
[2025-10-13 12:01:03] 2025-10-13 16:00:16,011 | INFO     | 
[2025-10-13 12:01:03] 2025-10-13 16:00:16,011 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-13 12:01:03] 2025-10-13 16:00:16,037 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 12:01:03] 2025-10-13 16:00:16,037 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 12:01:03] 2025-10-13 16:00:16,038 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 12:01:03] 2025-10-13 16:00:16,038 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 12:01:03] 2025-10-13 16:00:16,038 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 12:01:03] 2025-10-13 16:00:16,038 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 12:01:03] 2025-10-13 16:00:16,038 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 12:01:03] 2025-10-13 16:00:16,038 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 12:01:03] 2025-10-13 16:00:16,038 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 12:01:03] 2025-10-13 16:00:16,038 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 12:01:03] 2025-10-13 16:00:16,039 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 12:01:03] 2025-10-13 16:00:16,039 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 12:01:03] 2025-10-13 16:00:16,039 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 12:01:03] 2025-10-13 16:00:16,039 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 12:01:03] 2025-10-13 16:00:16,039 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 12:01:03] 2025-10-13 16:00:16,039 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 12:01:03] 2025-10-13 16:00:16,039 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 12:01:03] 2025-10-13 16:00:16,039 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 12:01:03] 2025-10-13 16:00:16,039 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 12:01:03] 2025-10-13 16:00:16,040 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 12:01:03] 2025-10-13 16:00:16,040 | INFO     | job 6840850811 has completed (purged errors)
[2025-10-13 12:01:03] 2025-10-13 16:00:16,040 | INFO     | overall cleanup function is called
[2025-10-13 12:01:03] 2025-10-13 16:00:17,050 | INFO     | --- collectZombieJob: --- 10, [1407477]
[2025-10-13 12:01:03] 2025-10-13 16:00:17,050 | INFO     | zombie collector waiting for pid 1407477
[2025-10-13 12:01:03] 2025-10-13 16:00:17,050 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 12:01:03] 2025-10-13 16:00:17,050 | INFO     | collected zombie processes
[2025-10-13 12:01:03] 2025-10-13 16:00:17,050 | INFO     | will attempt to kill all subprocesses of pid=1407477
[2025-10-13 12:01:03] 2025-10-13 16:00:17,305 | INFO     | process IDs to be killed: [1407477] (in reverse order)
[2025-10-13 12:01:03] 2025-10-13 16:00:17,378 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 12:01:03] 2025-10-13 16:00:17,378 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 12:01:03] 2025-10-13 16:00:17,387 | INFO     | did not find any defunct processes belonging to 1407477
[2025-10-13 12:01:03] 2025-10-13 16:00:17,395 | INFO     | did not find any defunct processes belonging to 1407477
[2025-10-13 12:01:03] 2025-10-13 16:00:17,395 | INFO     | ready for new job
[2025-10-13 12:01:03] 2025-10-13 16:00:17,395 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 12:01:03] 2025-10-13 16:00:17,399 | INFO     | ***************************************
[2025-10-13 12:01:03] 2025-10-13 16:00:17,399 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 12:01:03] 2025-10-13 16:00:17,400 | INFO     | ***************************************
[2025-10-13 12:01:03] 2025-10-13 16:00:17,400 | INFO     | 
[2025-10-13 12:01:03] 2025-10-13 16:00:17,402 | INFO     | architecture information:
[2025-10-13 12:01:03] 2025-10-13 16:00:17,402 | INFO     | executing command: cat /etc/os-release
[2025-10-13 12:01:03] 2025-10-13 16:00:17,417 | INFO     | cat /etc/os-release:
[2025-10-13 12:01:03] NAME="CentOS Linux"
[2025-10-13 12:01:03] VERSION="7 (Core)"
[2025-10-13 12:01:03] ID="centos"
[2025-10-13 12:01:03] ID_LIKE="rhel fedora"
[2025-10-13 12:01:03] VERSION_ID="7"
[2025-10-13 12:01:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 12:01:03] ANSI_COLOR="0;31"
[2025-10-13 12:01:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 12:01:03] HOME_URL="https://www.centos.org/"
[2025-10-13 12:01:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 12:01:03] 
[2025-10-13 12:01:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 12:01:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 12:01:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 12:01:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 12:01:03] 
[2025-10-13 12:01:03] 2025-10-13 16:00:17,418 | INFO     | ***************************************
[2025-10-13 12:01:03] 2025-10-13 16:00:17,920 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-13 12:01:03] 2025-10-13 16:00:17,940 | INFO     | sufficient remaining disk space (53347352576 B)
[2025-10-13 12:01:03] 2025-10-13 16:00:17,941 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 12:01:03] 2025-10-13 16:00:17,941 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 12:01:03] 2025-10-13 16:00:17,941 | INFO     | update_server=False
[2025-10-13 12:01:03] 2025-10-13 16:00:17,941 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 12:01:03] 2025-10-13 16:00:17,941 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:01:03] 2025-10-13 16:00:17,946 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:01:03] 2025-10-13 16:00:17,946 | INFO     | aborting loop
[2025-10-13 12:01:03] 2025-10-13 16:00:18,530 | INFO     | all data control threads have been joined
[2025-10-13 12:01:03] 2025-10-13 16:00:18,731 | INFO     | all payload control threads have been joined
[2025-10-13 12:01:03] 2025-10-13 16:00:18,895 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 12:01:03] 2025-10-13 16:00:18,946 | INFO     | [job] retrieve thread has finished
[2025-10-13 12:01:03] 2025-10-13 16:00:18,947 | INFO     | [job] queue monitor thread has finished
[2025-10-13 12:01:03] 2025-10-13 16:00:18,952 | INFO     | [job] job monitor thread has finished
[2025-10-13 12:01:03] 2025-10-13 16:00:19,041 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 12:01:03] 2025-10-13 16:00:19,055 | INFO     | all job control threads have been joined
[2025-10-13 12:01:03] 2025-10-13 16:00:19,459 | INFO     | [payload] validate_post thread has finished
[2025-10-13 12:01:03] 2025-10-13 16:00:19,536 | INFO     | [data] control thread has finished
[2025-10-13 12:01:03] 2025-10-13 16:00:19,573 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 12:01:03] 2025-10-13 16:00:19,597 | INFO     | [job] validate thread has finished
[2025-10-13 12:01:03] 2025-10-13 16:00:19,749 | INFO     | [payload] control thread has finished
[2025-10-13 12:01:03] 2025-10-13 16:00:19,855 | INFO     | [data] copytool_in thread has finished
[2025-10-13 12:01:03] 2025-10-13 16:00:19,855 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 12:01:03] 2025-10-13 16:00:20,061 | INFO     | [job] control thread has finished
[2025-10-13 12:01:03] 2025-10-13 16:00:20,086 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 12:01:03] 2025-10-13 16:00:20,254 | INFO     | [payload] failed_post thread has finished
[2025-10-13 12:01:03] 2025-10-13 16:00:20,597 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 12:01:03] 2025-10-13 16:00:20,902 | INFO     | [data] copytool_out thread has finished
[2025-10-13 12:01:03] 2025-10-13 16:00:24,606 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 12:01:03] 2025-10-13 16:00:48,471 | INFO     | PID=1398407 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 12:01:03] 2025-10-13 16:00:48,472 | INFO     | .. there are 7 such processes running
[2025-10-13 12:01:03] 2025-10-13 16:00:48,473 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 12:01:03] 2025-10-13 16:00:48,473 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 12:01:03] 2025-10-13 16:00:48,473 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 12:01:03] 2025-10-13 16:00:57,074 | INFO     | [monitor] cgroup control has ended
[2025-10-13 12:01:03] 2025-10-13 16:00:58,084 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140698192275264)>', '<ExcThread(monitor, started 140697919264512)>']
[2025-10-13 12:01:03] 2025-10-13 16:00:58,534 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 12:01:03] 2025-10-13 16:00:58,534 | INFO     | [monitor] control thread has ended
[2025-10-13 12:01:03] 2025-10-13 16:01:03,109 | INFO     | all workflow threads have been joined
[2025-10-13 12:01:03] 2025-10-13 16:01:03,110 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 12:01:03] 2025-10-13 16:01:03,110 | INFO     | traces error code: 0
[2025-10-13 12:01:03] 2025-10-13 16:01:03,110 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 12:01:03] 2025-10-13 16:01:03,308 [wrapper] ==== pilot stdout END ====
[2025-10-13 12:01:03] 2025-10-13 16:01:03,327 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 12:01:03] 2025-10-13 16:01:03,340 [wrapper] pilotpid: 1398407
[2025-10-13 12:01:03] 2025-10-13 16:01:03,371 [wrapper] Pilot exit status: 0
[2025-10-13 12:01:03] 2025-10-13 16:01:03,472 [wrapper] pandaids: 6840850811
[2025-10-13 12:01:03] 2025-10-13 16:01:03,562 [wrapper] cleanup supervisor_pilot 2457215 1398408
[2025-10-13 12:01:03] 2025-10-13 16:01:03,569 [wrapper] Test setup, not cleaning
[2025-10-13 12:01:03] 2025-10-13 16:01:03,573 [wrapper] apfmon messages muted
[2025-10-13 12:01:03] 2025-10-13 16:01:03,577 [wrapper] ==== wrapper stdout END ====
[2025-10-13 12:01:03] 2025-10-13 16:01:03,580 [wrapper] ==== wrapper stderr END ====
[2025-10-13 12:01:03]  *** Error codes and diagnostics ***
[2025-10-13 12:01:03]     "exeErrorCode": 0,
[2025-10-13 12:01:03]     "exeErrorDiag": "",
[2025-10-13 12:01:03]     "pilotErrorCode": 0,
[2025-10-13 12:01:03]     "pilotErrorDiag": "",
[2025-10-13 12:01:03]  *** Listing of results directory ***
[2025-10-13 12:01:03] total 422024
[2025-10-13 12:01:03] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-13 12:01:03] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 18:12 queuedata.json
[2025-10-13 12:01:03] -rwx------. 1 boincer umatlas     36292 Oct 12 18:12 runpilot2-wrapper.sh
[2025-10-13 12:01:03] -rw-r--r--. 1 boincer umatlas       100 Oct 13 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 12:01:03] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 00:02 run_atlas
[2025-10-13 12:01:03] -rw-r--r--. 1 boincer umatlas       105 Oct 13 00:02 job.xml
[2025-10-13 12:01:03] -rw-r--r--. 2 boincer umatlas 220622902 Oct 13 00:02 EVNT.46676267._004298.pool.root.1
[2025-10-13 12:01:03] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:02 start_atlas.sh
[2025-10-13 12:01:03] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 00:02 shared
[2025-10-13 12:01:03] -rw-r--r--. 2 boincer umatlas    569679 Oct 13 00:02 input.tar.gz
[2025-10-13 12:01:03] -rw-r--r--. 1 boincer umatlas         0 Oct 13 00:02 boinc_lockfile
[2025-10-13 12:01:03] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 00:02 pandaJob.out
[2025-10-13 12:01:03] -rw-------. 1 boincer umatlas    974373 Oct 13 00:03 agis_schedconf.cvmfs.json
[2025-10-13 12:01:03] drwx------. 5 boincer umatlas      4096 Oct 13 00:03 pilot3
[2025-10-13 12:01:03] -rw-r--r--. 1 boincer umatlas      6661 Oct 13 11:54 init_data.xml
[2025-10-13 12:01:03] -rw-------. 1 boincer umatlas 196007949 Oct 13 11:59 HITS.46676269._090759.pool.root.1
[2025-10-13 12:01:03] -rw-r--r--. 1 boincer umatlas       531 Oct 13 11:59 boinc_task_state.xml
[2025-10-13 12:01:03] -rw-------. 1 boincer umatlas      1041 Oct 13 11:59 memory_monitor_summary.json
[2025-10-13 12:01:03] -rw-------. 1 boincer umatlas   1560580 Oct 13 12:00 agis_ddmendpoints.agis.ALL.json
[2025-10-13 12:01:03] -rw-------. 1 boincer umatlas    852070 Oct 13 12:00 log.46676269._090759.job.log.tgz.1
[2025-10-13 12:01:03] -rw-------. 1 boincer umatlas      7827 Oct 13 12:00 heartbeat.json
[2025-10-13 12:01:03] -rw-------. 1 boincer umatlas        95 Oct 13 12:00 pilot_heartbeat.json
[2025-10-13 12:01:03] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 12:00 boinc_mmap_file
[2025-10-13 12:01:03] -rw-r--r--. 1 boincer umatlas        28 Oct 13 12:00 wrapper_checkpoint.txt
[2025-10-13 12:01:03] -rw-------. 1 boincer umatlas      4823 Oct 13 12:01 pilotlog.txt
[2025-10-13 12:01:03] -rw-------. 1 boincer umatlas   4952524 Oct 13 12:01 log.46676269._090759.job.log.1
[2025-10-13 12:01:03] -rw-------. 1 boincer umatlas       357 Oct 13 12:01 output.list
[2025-10-13 12:01:03] -rw-r--r--. 1 boincer umatlas       620 Oct 13 12:01 runtime_log
[2025-10-13 12:01:03] -rw-------. 1 boincer umatlas   5826560 Oct 13 12:01 result.tar.gz
[2025-10-13 12:01:03] -rw-r--r--. 1 boincer umatlas      8706 Oct 13 12:01 runtime_log.err
[2025-10-13 12:01:03] -rw-------. 1 boincer umatlas       658 Oct 13 12:01 6HwNDmjTJS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmz8UMDmncpQnn.diag
[2025-10-13 12:01:03] -rw-r--r--. 1 boincer umatlas     20987 Oct 13 12:01 stderr.txt
[2025-10-13 12:01:03] HITS file was successfully produced:
[2025-10-13 12:01:03] -rw-------. 1 boincer umatlas 196007949 Oct 13 11:59 shared/HITS.pool.root.1
[2025-10-13 12:01:03]  *** Contents of shared directory: ***
[2025-10-13 12:01:03] total 413148
[2025-10-13 12:01:03] -rw-r--r--. 2 boincer umatlas 220622902 Oct 13 00:02 ATLAS.root_0
[2025-10-13 12:01:03] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:02 start_atlas.sh
[2025-10-13 12:01:03] -rw-r--r--. 2 boincer umatlas    569679 Oct 13 00:02 input.tar.gz
[2025-10-13 12:01:03] -rw-------. 1 boincer umatlas 196007949 Oct 13 11:59 HITS.pool.root.1
[2025-10-13 12:01:03] -rw-------. 1 boincer umatlas   5826560 Oct 13 12:01 result.tar.gz
12:01:05 (1392692): run_atlas exited; CPU time 54603.826886
12:01:05 (1392692): called boinc_finish(0)

</stderr_txt>
]]>

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