Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:16 (4034378): wrapper (7.7.26015): starting
00:01:16 (4034378): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 00:01:16] Arguments: --nthreads 8
[2025-10-13 00:01:16] Threads: 8
[2025-10-13 00:01:16] Checking for CVMFS
[2025-10-13 00:01:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:01:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:01:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:01:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:01:19] 2.13.2.0 3657063 130176 492432 151647 2 1001 20826003 32935937 28597 16776704 0 189790454 99.586 217018093 30599 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 00:01:19] CVMFS is ok
[2025-10-13 00:01:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:01:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:01:19] Further information can be found at the LHC@home message board.
[2025-10-13 00:01:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:01:19] Checking for apptainer binary...
[2025-10-13 00:01:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:01:19] Running /usr/bin/apptainer --version
[2025-10-13 00:01:20] apptainer version 1.4.3-1.el9
[2025-10-13 00:01:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:01:20] c6-6-39-4.aglt2.org
[2025-10-13 00:01:20] apptainer works
[2025-10-13 00:01:20] Set ATHENA_PROC_NUMBER=8
[2025-10-13 00:01:20] Set ATHENA_CORE_NUMBER=8
[2025-10-13 00:01:21] Starting ATLAS job with PandaID=6840961520
[2025-10-13 00:01:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 09:53:14]  *** The last 200 lines of the pilot log: ***
[2025-10-13 09:53:14] 2025-10-13 13:52:32,773 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 09:53:14] 2025-10-13 13:52:32,802 | INFO     | fitting pss+swap vs Time
[2025-10-13 09:53:14] 2025-10-13 13:52:32,803 | INFO     | sum of square deviations: 59256722289.555565
[2025-10-13 09:53:14] 2025-10-13 13:52:32,818 | INFO     | sum of deviations: 314301478739.861
[2025-10-13 09:53:14] 2025-10-13 13:52:32,818 | INFO     | mean x: 1760345920.0277777
[2025-10-13 09:53:14] 2025-10-13 13:52:32,819 | INFO     | mean y: 2200568.6961805555
[2025-10-13 09:53:14] 2025-10-13 13:52:32,819 | INFO     | -- intersect: -9334787782.681656
[2025-10-13 09:53:14] 2025-10-13 13:52:32,819 | INFO     | intersect: -9334787782.681656
[2025-10-13 09:53:14] 2025-10-13 13:52:32,826 | INFO     | chi2: 4.854521471419646
[2025-10-13 09:53:14] 2025-10-13 13:52:32,827 | INFO     | sum of square deviations: 57727000278.15045
[2025-10-13 09:53:14] 2025-10-13 13:52:32,841 | INFO     | sum of deviations: 350546560358.9528
[2025-10-13 09:53:14] 2025-10-13 13:52:32,841 | INFO     | mean x: 1760345767.5323994
[2025-10-13 09:53:14] 2025-10-13 13:52:32,841 | INFO     | mean y: 2204157.7863397547
[2025-10-13 09:53:14] 2025-10-13 13:52:32,842 | INFO     | -- intersect: -10687475729.919312
[2025-10-13 09:53:14] 2025-10-13 13:52:32,842 | INFO     | intersect: -10687475729.919312
[2025-10-13 09:53:14] 2025-10-13 13:52:32,842 | INFO     | chi2: 4.04443716436405
[2025-10-13 09:53:14] 2025-10-13 13:52:32,842 | INFO     | current chi2=4.04443716436405 (change=16.687212361194824 %)
[2025-10-13 09:53:14] 2025-10-13 13:52:32,842 | INFO     | right removable region: 570
[2025-10-13 09:53:14] 2025-10-13 13:52:32,847 | INFO     | sum of square deviations: 57726849852.21369
[2025-10-13 09:53:14] 2025-10-13 13:52:32,884 | INFO     | sum of deviations: 167605151994.01764
[2025-10-13 09:53:14] 2025-10-13 13:52:32,884 | INFO     | mean x: 1760346072.530648
[2025-10-13 09:53:14] 2025-10-13 13:52:32,884 | INFO     | mean y: 2215178.1418563924
[2025-10-13 09:53:14] 2025-10-13 13:52:32,884 | INFO     | -- intersect: -5108804595.22028
[2025-10-13 09:53:14] 2025-10-13 13:52:32,884 | INFO     | intersect: -5108804595.22028
[2025-10-13 09:53:14] 2025-10-13 13:52:32,885 | INFO     | chi2: 1.8316933468464707
[2025-10-13 09:53:14] 2025-10-13 13:52:32,885 | INFO     | current chi2=1.8316933468464707 (change=62.268302702329706 %)
[2025-10-13 09:53:14] 2025-10-13 13:52:32,886 | INFO     | sum of square deviations: 56223536052.36211
[2025-10-13 09:53:14] 2025-10-13 13:52:32,913 | INFO     | sum of deviations: 106551602000.41345
[2025-10-13 09:53:14] 2025-10-13 13:52:32,913 | INFO     | mean x: 1760346225.0335689
[2025-10-13 09:53:14] 2025-10-13 13:52:32,914 | INFO     | mean y: 2221370.3992932863
[2025-10-13 09:53:14] 2025-10-13 13:52:32,914 | INFO     | -- intersect: -3333885241.2165523
[2025-10-13 09:53:14] 2025-10-13 13:52:32,914 | INFO     | intersect: -3333885241.2165523
[2025-10-13 09:53:14] 2025-10-13 13:52:32,914 | INFO     | chi2: 1.3629548026173315
[2025-10-13 09:53:14] 2025-10-13 13:52:32,915 | INFO     | current chi2=1.3629548026173315 (change=25.5904485887958 %)
[2025-10-13 09:53:14] 2025-10-13 13:52:32,915 | INFO     | sum of square deviations: 54746583097.57225
[2025-10-13 09:53:14] 2025-10-13 13:52:32,930 | INFO     | sum of deviations: 72293642887.25108
[2025-10-13 09:53:14] 2025-10-13 13:52:32,930 | INFO     | mean x: 1760346377.5347593
[2025-10-13 09:53:14] 2025-10-13 13:52:32,934 | INFO     | mean y: 2224903.6024955437
[2025-10-13 09:53:14] 2025-10-13 13:52:32,934 | INFO     | -- intersect: -2322337565.4113455
[2025-10-13 09:53:14] 2025-10-13 13:52:32,934 | INFO     | intersect: -2322337565.4113455
[2025-10-13 09:53:14] 2025-10-13 13:52:32,935 | INFO     | chi2: 1.2073605876687767
[2025-10-13 09:53:14] 2025-10-13 13:52:32,935 | INFO     | current chi2=1.2073605876687767 (change=11.415948250797571 %)
[2025-10-13 09:53:14] 2025-10-13 13:52:32,936 | INFO     | left removable region: 30
[2025-10-13 09:53:14] 2025-10-13 13:52:32,936 | INFO     | sum of square deviations: 48825948279.40021
[2025-10-13 09:53:14] 2025-10-13 13:52:32,958 | INFO     | sum of deviations: 31537787015.76666
[2025-10-13 09:53:14] 2025-10-13 13:52:32,958 | INFO     | mean x: 1760346652.0333333
[2025-10-13 09:53:14] 2025-10-13 13:52:32,959 | INFO     | mean y: 2237382.4574074075
[2025-10-13 09:53:14] 2025-10-13 13:52:32,959 | INFO     | -- intersect: -1134810432.1196647
[2025-10-13 09:53:14] 2025-10-13 13:52:32,959 | INFO     | intersect: -1134810432.1196647
[2025-10-13 09:53:14] 2025-10-13 13:52:32,959 | INFO     | chi2: 0.11113170727731309
[2025-10-13 09:53:14] 2025-10-13 13:52:32,960 | INFO     | -- intersect: -1134810432.1196647
[2025-10-13 09:53:14] 2025-10-13 13:52:32,960 | INFO     | current memory leak: 0.65 B/s (using 540 data points, chi2=0.11)
[2025-10-13 09:53:14] 2025-10-13 13:52:32,961 | INFO     | could have reported an average CPU frequency of 2826 MHz (23 samples)
[2025-10-13 09:53:14] 2025-10-13 13:52:32,961 | INFO     | ..............................
[2025-10-13 09:53:14] 2025-10-13 13:52:32,961 | INFO     | . Timing measurements:
[2025-10-13 09:53:14] 2025-10-13 13:52:32,963 | INFO     | . get job = 0 s
[2025-10-13 09:53:14] 2025-10-13 13:52:32,963 | INFO     | . initial setup = 6 s
[2025-10-13 09:53:14] 2025-10-13 13:52:32,963 | INFO     | . payload setup = 56 s
[2025-10-13 09:53:14] 2025-10-13 13:52:32,963 | INFO     | . stage-in = 1 s
[2025-10-13 09:53:14] 2025-10-13 13:52:32,963 | INFO     | . payload execution = 35178 s
[2025-10-13 09:53:14] 2025-10-13 13:52:32,964 | INFO     | . stage-out = 5 s
[2025-10-13 09:53:14] 2025-10-13 13:52:32,964 | INFO     | . log creation = 1 s
[2025-10-13 09:53:14] 2025-10-13 13:52:32,964 | INFO     | ..............................
[2025-10-13 09:53:14] 2025-10-13 13:52:33,357 | INFO     | PID=4049544 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 09:53:14] 2025-10-13 13:52:33,358 | INFO     | .. there are 24 such processes running
[2025-10-13 09:53:14] 2025-10-13 13:52:33,416 | INFO     | 
[2025-10-13 09:53:14] 2025-10-13 13:52:33,416 | INFO     | job summary report
[2025-10-13 09:53:14] 2025-10-13 13:52:33,416 | INFO     | --------------------------------------------------
[2025-10-13 09:53:14] 2025-10-13 13:52:33,416 | INFO     | PanDA job id: 6840961520
[2025-10-13 09:53:14] 2025-10-13 13:52:33,416 | INFO     | task id: 46676269
[2025-10-13 09:53:14] 2025-10-13 13:52:33,417 | INFO     | errors: (none)
[2025-10-13 09:53:14] 2025-10-13 13:52:33,417 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 09:53:14] 2025-10-13 13:52:33,417 | INFO     | pilot state: finished 
[2025-10-13 09:53:14] 2025-10-13 13:52:33,417 | INFO     | transexitcode: 0
[2025-10-13 09:53:14] 2025-10-13 13:52:33,417 | INFO     | exeerrorcode: 0
[2025-10-13 09:53:14] 2025-10-13 13:52:33,417 | INFO     | exeerrordiag: 
[2025-10-13 09:53:14] 2025-10-13 13:52:33,417 | INFO     | exitcode: 0
[2025-10-13 09:53:14] 2025-10-13 13:52:33,417 | INFO     | exitmsg: OK
[2025-10-13 09:53:14] 2025-10-13 13:52:33,417 | INFO     | cpuconsumptiontime: 43304 s
[2025-10-13 09:53:14] 2025-10-13 13:52:33,417 | INFO     | nevents: 400
[2025-10-13 09:53:14] 2025-10-13 13:52:33,417 | INFO     | neventsw: 0
[2025-10-13 09:53:14] 2025-10-13 13:52:33,417 | INFO     | pid: 4086448
[2025-10-13 09:53:14] 2025-10-13 13:52:33,417 | INFO     | pgrp: 4086448
[2025-10-13 09:53:14] 2025-10-13 13:52:33,417 | INFO     | corecount: 8
[2025-10-13 09:53:14] 2025-10-13 13:52:33,417 | INFO     | event service: False
[2025-10-13 09:53:14] 2025-10-13 13:52:33,417 | INFO     | sizes: {0: 2348029, 1: 2348714, 2: 2348913, 3: 2348913, 14: 2348941, 25: 2348969, 36: 2349125, 47: 2349153, 50: 2349471, 58: 2349499, 35239: 2389606, 35245: 239860
[2025-10-13 09:53:14] 2025-10-13 13:52:33,417 | INFO     | --------------------------------------------------
[2025-10-13 09:53:14] 2025-10-13 13:52:33,418 | INFO     | 
[2025-10-13 09:53:14] 2025-10-13 13:52:33,418 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-13 09:53:14] 2025-10-13 13:52:33,508 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 09:53:14] 2025-10-13 13:52:33,508 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 09:53:14] 2025-10-13 13:52:33,508 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 09:53:14] 2025-10-13 13:52:33,508 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 09:53:14] 2025-10-13 13:52:33,508 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 09:53:14] 2025-10-13 13:52:33,508 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 09:53:14] 2025-10-13 13:52:33,508 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 09:53:14] 2025-10-13 13:52:33,508 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 09:53:14] 2025-10-13 13:52:33,509 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 09:53:14] 2025-10-13 13:52:33,509 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 09:53:14] 2025-10-13 13:52:33,509 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 09:53:14] 2025-10-13 13:52:33,509 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 09:53:14] 2025-10-13 13:52:33,509 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 09:53:14] 2025-10-13 13:52:33,509 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 09:53:14] 2025-10-13 13:52:33,509 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 09:53:14] 2025-10-13 13:52:33,509 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 09:53:14] 2025-10-13 13:52:33,509 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 09:53:14] 2025-10-13 13:52:33,509 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 09:53:14] 2025-10-13 13:52:33,509 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 09:53:14] 2025-10-13 13:52:33,509 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 09:53:14] 2025-10-13 13:52:33,509 | INFO     | job 6840961520 has completed (purged errors)
[2025-10-13 09:53:14] 2025-10-13 13:52:33,510 | INFO     | overall cleanup function is called
[2025-10-13 09:53:14] 2025-10-13 13:52:34,521 | INFO     | --- collectZombieJob: --- 10, [4086448]
[2025-10-13 09:53:14] 2025-10-13 13:52:34,521 | INFO     | zombie collector waiting for pid 4086448
[2025-10-13 09:53:14] 2025-10-13 13:52:34,522 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 09:53:14] 2025-10-13 13:52:34,522 | INFO     | collected zombie processes
[2025-10-13 09:53:14] 2025-10-13 13:52:34,522 | INFO     | will attempt to kill all subprocesses of pid=4086448
[2025-10-13 09:53:14] 2025-10-13 13:52:35,595 | INFO     | process IDs to be killed: [4086448] (in reverse order)
[2025-10-13 09:53:14] 2025-10-13 13:52:35,827 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 09:53:14] 2025-10-13 13:52:35,828 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 09:53:14] 2025-10-13 13:52:35,861 | INFO     | did not find any defunct processes belonging to 4086448
[2025-10-13 09:53:14] 2025-10-13 13:52:35,964 | INFO     | did not find any defunct processes belonging to 4086448
[2025-10-13 09:53:14] 2025-10-13 13:52:35,964 | INFO     | ready for new job
[2025-10-13 09:53:14] 2025-10-13 13:52:35,965 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 09:53:14] 2025-10-13 13:52:35,989 | INFO     | ***************************************
[2025-10-13 09:53:14] 2025-10-13 13:52:35,989 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 09:53:14] 2025-10-13 13:52:35,989 | INFO     | ***************************************
[2025-10-13 09:53:14] 2025-10-13 13:52:35,989 | INFO     | 
[2025-10-13 09:53:14] 2025-10-13 13:52:36,016 | INFO     | architecture information:
[2025-10-13 09:53:14] 2025-10-13 13:52:36,016 | INFO     | executing command: cat /etc/os-release
[2025-10-13 09:53:14] 2025-10-13 13:52:36,083 | INFO     | cat /etc/os-release:
[2025-10-13 09:53:14] NAME="CentOS Linux"
[2025-10-13 09:53:14] VERSION="7 (Core)"
[2025-10-13 09:53:14] ID="centos"
[2025-10-13 09:53:14] ID_LIKE="rhel fedora"
[2025-10-13 09:53:14] VERSION_ID="7"
[2025-10-13 09:53:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 09:53:14] ANSI_COLOR="0;31"
[2025-10-13 09:53:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 09:53:14] HOME_URL="https://www.centos.org/"
[2025-10-13 09:53:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 09:53:14] 
[2025-10-13 09:53:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 09:53:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 09:53:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 09:53:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 09:53:14] 
[2025-10-13 09:53:14] 2025-10-13 13:52:36,084 | INFO     | ***************************************
[2025-10-13 09:53:14] 2025-10-13 13:52:36,596 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-13 09:53:14] 2025-10-13 13:52:36,652 | INFO     | sufficient remaining disk space (74582065152 B)
[2025-10-13 09:53:14] 2025-10-13 13:52:36,652 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 09:53:14] 2025-10-13 13:52:36,652 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 09:53:14] 2025-10-13 13:52:36,652 | INFO     | update_server=False
[2025-10-13 09:53:14] 2025-10-13 13:52:36,652 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 09:53:14] 2025-10-13 13:52:36,653 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 09:53:14] 2025-10-13 13:52:36,653 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:53:14] 2025-10-13 13:52:36,653 | INFO     | aborting loop
[2025-10-13 09:53:14] 2025-10-13 13:52:36,902 | INFO     | all data control threads have been joined
[2025-10-13 09:53:14] 2025-10-13 13:52:37,008 | INFO     | all job control threads have been joined
[2025-10-13 09:53:14] 2025-10-13 13:52:37,118 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 09:53:14] 2025-10-13 13:52:37,658 | INFO     | [job] retrieve thread has finished
[2025-10-13 09:53:14] 2025-10-13 13:52:37,659 | INFO     | [job] job monitor thread has finished
[2025-10-13 09:53:14] 2025-10-13 13:52:37,738 | INFO     | [payload] failed_post thread has finished
[2025-10-13 09:53:14] 2025-10-13 13:52:37,791 | INFO     | [data] copytool_in thread has finished
[2025-10-13 09:53:14] 2025-10-13 13:52:37,907 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 09:53:14] 2025-10-13 13:52:37,908 | INFO     | [data] control thread has finished
[2025-10-13 09:53:14] 2025-10-13 13:52:38,004 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 09:53:14] 2025-10-13 13:52:38,015 | INFO     | [job] control thread has finished
[2025-10-13 09:53:14] 2025-10-13 13:52:38,025 | INFO     | [job] validate thread has finished
[2025-10-13 09:53:14] 2025-10-13 13:52:38,095 | INFO     | all payload control threads have been joined
[2025-10-13 09:53:14] 2025-10-13 13:52:38,185 | INFO     | [payload] validate_post thread has finished
[2025-10-13 09:53:14] 2025-10-13 13:52:38,519 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:53:14] 2025-10-13 13:52:38,842 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 09:53:14] 2025-10-13 13:52:38,853 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 09:53:14] 2025-10-13 13:52:39,107 | INFO     | [payload] control thread has finished
[2025-10-13 09:53:14] 2025-10-13 13:52:39,144 | INFO     | [data] copytool_out thread has finished
[2025-10-13 09:53:14] 2025-10-13 13:52:39,525 | INFO     | [job] queue monitor thread has finished
[2025-10-13 09:53:14] 2025-10-13 13:52:40,665 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 09:53:14] 2025-10-13 13:53:05,761 | INFO     | PID=4049544 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 09:53:14] 2025-10-13 13:53:05,762 | INFO     | .. there are 24 such processes running
[2025-10-13 09:53:14] 2025-10-13 13:53:05,763 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 09:53:14] 2025-10-13 13:53:05,763 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 09:53:14] 2025-10-13 13:53:05,763 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 09:53:14] 2025-10-13 13:53:08,228 | INFO     | [monitor] cgroup control has ended
[2025-10-13 09:53:14] 2025-10-13 13:53:08,848 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140349459760960)>', '<ExcThread(monitor, started 140348944783104)>']
[2025-10-13 09:53:14] 2025-10-13 13:53:09,784 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 09:53:14] 2025-10-13 13:53:09,784 | INFO     | [monitor] control thread has ended
[2025-10-13 09:53:14] 2025-10-13 13:53:13,873 | INFO     | all workflow threads have been joined
[2025-10-13 09:53:14] 2025-10-13 13:53:13,874 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 09:53:14] 2025-10-13 13:53:13,875 | INFO     | traces error code: 0
[2025-10-13 09:53:14] 2025-10-13 13:53:13,875 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 09:53:14] 2025-10-13 13:53:14,019 [wrapper] ==== pilot stdout END ====
[2025-10-13 09:53:14] 2025-10-13 13:53:14,021 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 09:53:14] 2025-10-13 13:53:14,024 [wrapper] pilotpid: 4049544
[2025-10-13 09:53:14] 2025-10-13 13:53:14,026 [wrapper] Pilot exit status: 0
[2025-10-13 09:53:14] 2025-10-13 13:53:14,038 [wrapper] pandaids: 6840961520
[2025-10-13 09:53:14] 2025-10-13 13:53:14,109 [wrapper] cleanup supervisor_pilot 1746119 4049545
[2025-10-13 09:53:14] 2025-10-13 13:53:14,112 [wrapper] Test setup, not cleaning
[2025-10-13 09:53:14] 2025-10-13 13:53:14,115 [wrapper] apfmon messages muted
[2025-10-13 09:53:14] 2025-10-13 13:53:14,118 [wrapper] ==== wrapper stdout END ====
[2025-10-13 09:53:14] 2025-10-13 13:53:14,121 [wrapper] ==== wrapper stderr END ====
[2025-10-13 09:53:14]  *** Error codes and diagnostics ***
[2025-10-13 09:53:14]     "exeErrorCode": 0,
[2025-10-13 09:53:14]     "exeErrorDiag": "",
[2025-10-13 09:53:14]     "pilotErrorCode": 0,
[2025-10-13 09:53:14]     "pilotErrorDiag": "",
[2025-10-13 09:53:14]  *** Listing of results directory ***
[2025-10-13 09:53:14] total 414316
[2025-10-13 09:53:14] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 18:57 pilot3.tar.gz
[2025-10-13 09:53:14] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 19:03 queuedata.json
[2025-10-13 09:53:14] -rwx------. 1 boincer umatlas     36292 Oct 12 19:05 runpilot2-wrapper.sh
[2025-10-13 09:53:14] -rw-r--r--. 1 boincer umatlas       100 Oct 13 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 09:53:14] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 00:01 run_atlas
[2025-10-13 09:53:14] -rw-r--r--. 1 boincer umatlas       105 Oct 13 00:01 job.xml
[2025-10-13 09:53:14] -rw-r--r--. 2 boincer umatlas 221370243 Oct 13 00:01 EVNT.46676267._004642.pool.root.1
[2025-10-13 09:53:14] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:01 start_atlas.sh
[2025-10-13 09:53:14] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 00:01 shared
[2025-10-13 09:53:14] -rw-r--r--. 2 boincer umatlas    569681 Oct 13 00:01 input.tar.gz
[2025-10-13 09:53:14] -rw-r--r--. 1 boincer umatlas         0 Oct 13 00:01 boinc_lockfile
[2025-10-13 09:53:14] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 00:01 pandaJob.out
[2025-10-13 09:53:14] -rw-------. 1 boincer umatlas    974373 Oct 13 00:02 agis_schedconf.cvmfs.json
[2025-10-13 09:53:14] drwx------. 5 boincer umatlas      4096 Oct 13 00:02 pilot3
[2025-10-13 09:53:14] -rw-r--r--. 1 boincer umatlas      6841 Oct 13 09:49 init_data.xml
[2025-10-13 09:53:14] -rw-------. 1 boincer umatlas 189522528 Oct 13 09:50 HITS.46676269._091819.pool.root.1
[2025-10-13 09:53:14] -rw-r--r--. 1 boincer umatlas       530 Oct 13 09:50 boinc_task_state.xml
[2025-10-13 09:53:14] -rw-------. 1 boincer umatlas      1044 Oct 13 09:51 memory_monitor_summary.json
[2025-10-13 09:53:14] -rw-------. 1 boincer umatlas   1560580 Oct 13 09:51 agis_ddmendpoints.agis.ALL.json
[2025-10-13 09:53:14] -rw-------. 1 boincer umatlas    720534 Oct 13 09:52 log.46676269._091819.job.log.tgz.1
[2025-10-13 09:53:14] -rw-------. 1 boincer umatlas      7831 Oct 13 09:52 heartbeat.json
[2025-10-13 09:53:14] -rw-------. 1 boincer umatlas        95 Oct 13 09:53 pilot_heartbeat.json
[2025-10-13 09:53:14] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 09:53 boinc_mmap_file
[2025-10-13 09:53:14] -rw-r--r--. 1 boincer umatlas        27 Oct 13 09:53 wrapper_checkpoint.txt
[2025-10-13 09:53:14] -rw-------. 1 boincer umatlas      4824 Oct 13 09:53 pilotlog.txt
[2025-10-13 09:53:14] -rw-------. 1 boincer umatlas   4011962 Oct 13 09:53 log.46676269._091819.job.log.1
[2025-10-13 09:53:14] -rw-------. 1 boincer umatlas       357 Oct 13 09:53 output.list
[2025-10-13 09:53:14] -rw-r--r--. 1 boincer umatlas       620 Oct 13 09:53 runtime_log
[2025-10-13 09:53:14] -rw-------. 1 boincer umatlas   4751360 Oct 13 09:53 result.tar.gz
[2025-10-13 09:53:14] -rw-r--r--. 1 boincer umatlas      8709 Oct 13 09:53 runtime_log.err
[2025-10-13 09:53:14] -rw-------. 1 boincer umatlas       660 Oct 13 09:53 4wlNDmqIKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmRzlNDmshSq0m.diag
[2025-10-13 09:53:14] -rw-r--r--. 1 boincer umatlas     21158 Oct 13 09:53 stderr.txt
[2025-10-13 09:53:14] HITS file was successfully produced:
[2025-10-13 09:53:14] -rw-------. 1 boincer umatlas 189522528 Oct 13 09:50 shared/HITS.pool.root.1
[2025-10-13 09:53:14]  *** Contents of shared directory: ***
[2025-10-13 09:53:14] total 406492
[2025-10-13 09:53:14] -rw-r--r--. 2 boincer umatlas 221370243 Oct 13 00:01 ATLAS.root_0
[2025-10-13 09:53:14] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:01 start_atlas.sh
[2025-10-13 09:53:14] -rw-r--r--. 2 boincer umatlas    569681 Oct 13 00:01 input.tar.gz
[2025-10-13 09:53:14] -rw-------. 1 boincer umatlas 189522528 Oct 13 09:50 HITS.pool.root.1
[2025-10-13 09:53:14] -rw-------. 1 boincer umatlas   4751360 Oct 13 09:53 result.tar.gz
09:53:15 (4034378): run_atlas exited; CPU time 44449.706102
09:53:15 (4034378): called boinc_finish(0)

</stderr_txt>
]]>

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