Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:39:51 (1672749): wrapper (7.7.26015): starting
14:39:51 (1672749): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 14:39:51] Arguments: --nthreads 12
[2025-10-13 14:39:51] Threads: 12
[2025-10-13 14:39:51] Checking for CVMFS
[2025-10-13 14:39:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 14:39:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 14:39:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 14:41:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 14:41:13] 2.13.2.0 8216 26347 236384 151661 0 78 30153432 46080000 51348 130560 0 178184357 99.897 49078773 22762 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-13 14:41:13] CVMFS is ok
[2025-10-13 14:41:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 14:41:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 14:41:13] Further information can be found at the LHC@home message board.
[2025-10-13 14:41:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 14:41:13] Checking for apptainer binary...
[2025-10-13 14:41:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 14:41:13] Running /usr/bin/apptainer --version
[2025-10-13 14:41:13] apptainer version 1.4.2-1.el9
[2025-10-13 14:41:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 14:41:14] mff2103.farm.particle.cz
[2025-10-13 14:41:14] apptainer works
[2025-10-13 14:41:14] Set ATHENA_PROC_NUMBER=12
[2025-10-13 14:41:14] Set ATHENA_CORE_NUMBER=12
[2025-10-13 14:41:14] Starting ATLAS job with PandaID=6840962050
[2025-10-13 14:41:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 16:42:01]  *** The last 200 lines of the pilot log: ***
[2025-10-13 16:42:01] 2025-10-13 14:16:43,452 | INFO     | total number of processed events: 400 (read)
[2025-10-13 16:42:01] 2025-10-13 14:16:43,453 | INFO     | executing command: lscpu
[2025-10-13 16:42:01] 2025-10-13 14:16:43,576 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 16:42:01] 2025-10-13 14:16:43,871 | INFO     | number of running child processes to parent process 1718639: 1
[2025-10-13 16:42:01] 2025-10-13 14:16:43,872 | INFO     | maximum number of monitored processes: 6
[2025-10-13 16:42:01] 2025-10-13 14:16:44,584 | INFO     | time since job start (5654s) is within the limit (172800.0s)
[2025-10-13 16:42:01] 2025-10-13 14:16:46,377 | INFO     | monitor loop #400: job 0:6840962050 is in state 'finished'
[2025-10-13 16:42:01] 2025-10-13 14:16:46,377 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:42:01] 2025-10-13 14:16:46,590 | INFO     | time since job start (5656s) is within the limit (172800.0s)
[2025-10-13 16:42:01] 2025-10-13 14:16:48,597 | INFO     | time since job start (5658s) is within the limit (172800.0s)
[2025-10-13 16:42:01] 2025-10-13 14:16:48,881 | INFO     | monitor loop #401: job 0:6840962050 is in state 'finished'
[2025-10-13 16:42:01] 2025-10-13 14:16:48,882 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:42:01] 2025-10-13 14:16:50,604 | INFO     | time since job start (5660s) is within the limit (172800.0s)
[2025-10-13 16:42:01] 2025-10-13 14:16:51,387 | INFO     | monitor loop #402: job 0:6840962050 is in state 'finished'
[2025-10-13 16:42:01] 2025-10-13 14:16:51,387 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:42:01] 2025-10-13 14:16:52,611 | INFO     | time since job start (5662s) is within the limit (172800.0s)
[2025-10-13 16:42:01] 2025-10-13 14:16:53,891 | INFO     | monitor loop #403: job 0:6840962050 is in state 'finished'
[2025-10-13 16:42:01] 2025-10-13 14:16:53,891 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:42:01] 2025-10-13 14:16:54,618 | INFO     | time since job start (5664s) is within the limit (172800.0s)
[2025-10-13 16:42:01] 2025-10-13 14:16:56,398 | INFO     | monitor loop #404: job 0:6840962050 is in state 'finished'
[2025-10-13 16:42:01] 2025-10-13 14:16:56,399 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:42:01] 2025-10-13 14:16:56,625 | INFO     | time since job start (5666s) is within the limit (172800.0s)
[2025-10-13 16:42:01] 2025-10-13 14:16:58,631 | INFO     | time since job start (5668s) is within the limit (172800.0s)
[2025-10-13 16:42:01] 2025-10-13 14:16:58,904 | INFO     | monitor loop #405: job 0:6840962050 is in state 'finished'
[2025-10-13 16:42:01] 2025-10-13 14:16:58,904 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:42:01] 2025-10-13 14:17:00,483 | INFO     | PID=1690700 has CPU usage=12.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 16:42:01] 2025-10-13 14:17:00,483 | INFO     | .. there are 82 such processes running
[2025-10-13 16:42:01] 2025-10-13 14:17:01,407 | INFO     | monitor loop #406: job 0:6840962050 is in state 'finished'
[2025-10-13 16:42:01] 2025-10-13 14:17:01,407 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:42:01] 2025-10-13 14:17:01,485 | INFO     | time since job start (5671s) is within the limit (172800.0s)
[2025-10-13 16:42:01] 2025-10-13 14:17:03,491 | INFO     | time since job start (5673s) is within the limit (172800.0s)
[2025-10-13 16:42:01] 2025-10-13 14:17:03,913 | INFO     | monitor loop #407: job 0:6840962050 is in state 'finished'
[2025-10-13 16:42:01] 2025-10-13 14:17:03,913 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:42:01] 2025-10-13 14:17:05,498 | INFO     | time since job start (5675s) is within the limit (172800.0s)
[2025-10-13 16:42:01] 2025-10-13 14:17:05,550 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 16:42:01] 2025-10-13 14:17:05,563 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2905.5422083333337
[2025-10-13 16:42:01] 2025-10-13 14:17:05,580 | INFO     | using path: /scratch/.boinc/slots/0/PanDA_Pilot-6840962050/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 16:42:01] 2025-10-13 14:17:05,581 | INFO     | extracted standard info from prmon json
[2025-10-13 16:42:01] 2025-10-13 14:17:05,581 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 16:42:01] 2025-10-13 14:17:05,581 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 16:42:01] 2025-10-13 14:17:05,581 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 16:42:01] 2025-10-13 14:17:05,581 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 16:42:01] 2025-10-13 14:17:05,583 | INFO     | fitting pss+swap vs Time
[2025-10-13 16:42:01] 2025-10-13 14:17:05,583 | INFO     | sum of square deviations: 177275882.0
[2025-10-13 16:42:01] 2025-10-13 14:17:05,584 | INFO     | sum of deviations: 1251226692.9999993
[2025-10-13 16:42:01] 2025-10-13 14:17:05,584 | INFO     | mean x: 1760362328.0
[2025-10-13 16:42:01] 2025-10-13 14:17:05,584 | INFO     | mean y: 2683309.493975904
[2025-10-13 16:42:01] 2025-10-13 14:17:05,584 | INFO     | -- intersect: -12422088234.698483
[2025-10-13 16:42:01] 2025-10-13 14:17:05,584 | INFO     | intersect: -12422088234.698483
[2025-10-13 16:42:01] 2025-10-13 14:17:05,584 | INFO     | chi2: 0.11997010817585096
[2025-10-13 16:42:01] 2025-10-13 14:17:05,584 | INFO     | -- intersect: -12422088234.698483
[2025-10-13 16:42:01] 2025-10-13 14:17:05,584 | INFO     | current memory leak: 7.06 B/s (using 83 data points, chi2=0.12)
[2025-10-13 16:42:01] 2025-10-13 14:17:05,585 | INFO     | could have reported an average CPU frequency of 2876 MHz (7 samples)
[2025-10-13 16:42:01] 2025-10-13 14:17:05,585 | INFO     | ..............................
[2025-10-13 16:42:01] 2025-10-13 14:17:05,585 | INFO     | . Timing measurements:
[2025-10-13 16:42:01] 2025-10-13 14:17:05,585 | INFO     | . get job = 0 s
[2025-10-13 16:42:01] 2025-10-13 14:17:05,585 | INFO     | . initial setup = 3 s
[2025-10-13 16:42:01] 2025-10-13 14:17:05,585 | INFO     | . payload setup = 48 s
[2025-10-13 16:42:01] 2025-10-13 14:17:05,585 | INFO     | . stage-in = 0 s
[2025-10-13 16:42:01] 2025-10-13 14:17:05,585 | INFO     | . payload execution = 5514 s
[2025-10-13 16:42:01] 2025-10-13 14:17:05,585 | INFO     | . stage-out = 1 s
[2025-10-13 16:42:01] 2025-10-13 14:17:05,585 | INFO     | . log creation = 0 s
[2025-10-13 16:42:01] 2025-10-13 14:17:05,586 | INFO     | ..............................
[2025-10-13 16:42:01] 2025-10-13 14:17:05,676 | INFO     | 
[2025-10-13 16:42:01] 2025-10-13 14:17:05,677 | INFO     | job summary report
[2025-10-13 16:42:01] 2025-10-13 14:17:05,677 | INFO     | --------------------------------------------------
[2025-10-13 16:42:01] 2025-10-13 14:17:05,677 | INFO     | PanDA job id: 6840962050
[2025-10-13 16:42:01] 2025-10-13 14:17:05,677 | INFO     | task id: 46676269
[2025-10-13 16:42:01] 2025-10-13 14:17:05,677 | INFO     | errors: (none)
[2025-10-13 16:42:01] 2025-10-13 14:17:05,677 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 16:42:01] 2025-10-13 14:17:05,677 | INFO     | pilot state: finished 
[2025-10-13 16:42:01] 2025-10-13 14:17:05,677 | INFO     | transexitcode: 0
[2025-10-13 16:42:01] 2025-10-13 14:17:05,677 | INFO     | exeerrorcode: 0
[2025-10-13 16:42:01] 2025-10-13 14:17:05,677 | INFO     | exeerrordiag: 
[2025-10-13 16:42:01] 2025-10-13 14:17:05,677 | INFO     | exitcode: 0
[2025-10-13 16:42:01] 2025-10-13 14:17:05,677 | INFO     | exitmsg: OK
[2025-10-13 16:42:01] 2025-10-13 14:17:05,677 | INFO     | cpuconsumptiontime: 36073 s
[2025-10-13 16:42:01] 2025-10-13 14:17:05,677 | INFO     | nevents: 400
[2025-10-13 16:42:01] 2025-10-13 14:17:05,678 | INFO     | neventsw: 0
[2025-10-13 16:42:01] 2025-10-13 14:17:05,678 | INFO     | pid: 1718639
[2025-10-13 16:42:01] 2025-10-13 14:17:05,678 | INFO     | pgrp: 1718639
[2025-10-13 16:42:01] 2025-10-13 14:17:05,680 | INFO     | corecount: 12
[2025-10-13 16:42:01] 2025-10-13 14:17:05,680 | INFO     | event service: False
[2025-10-13 16:42:01] 2025-10-13 14:17:05,680 | INFO     | sizes: {0: 2348686, 1: 2348885, 2: 2348885, 12: 2348913, 23: 2348941, 34: 2348969, 36: 2349387, 44: 2349415, 5566: 2376159, 5568: 2385159, 5570: 2385215, 5595: 238
[2025-10-13 16:42:01] 2025-10-13 14:17:05,680 | INFO     | --------------------------------------------------
[2025-10-13 16:42:01] 2025-10-13 14:17:05,680 | INFO     | 
[2025-10-13 16:42:01] 2025-10-13 14:17:05,680 | INFO     | executing command: ls -lF /scratch/.boinc/slots/0
[2025-10-13 16:42:01] 2025-10-13 14:17:05,718 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:17:05,718 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:17:05,718 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:17:05,719 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:17:05,719 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:17:05,719 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:17:05,719 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:17:05,719 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:17:05,719 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:17:05,719 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:17:05,719 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:17:05,719 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:17:05,719 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:17:05,719 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:17:05,719 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:17:05,719 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:17:05,719 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:17:05,719 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 16:42:01] 2025-10-13 14:17:05,719 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:17:05,720 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:17:05,720 | INFO     | job 6840962050 has completed (purged errors)
[2025-10-13 16:42:01] 2025-10-13 14:17:05,720 | INFO     | overall cleanup function is called
[2025-10-13 16:42:01] 2025-10-13 14:17:06,730 | INFO     | --- collectZombieJob: --- 10, [1718639]
[2025-10-13 16:42:01] 2025-10-13 14:17:06,731 | INFO     | zombie collector waiting for pid 1718639
[2025-10-13 16:42:01] 2025-10-13 14:17:06,731 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 16:42:01] 2025-10-13 14:17:06,731 | INFO     | collected zombie processes
[2025-10-13 16:42:01] 2025-10-13 14:17:06,731 | INFO     | will attempt to kill all subprocesses of pid=1718639
[2025-10-13 16:42:01] 2025-10-13 14:17:07,336 | INFO     | process IDs to be killed: [1718639] (in reverse order)
[2025-10-13 16:42:01] 2025-10-13 14:17:07,721 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 16:42:01] 2025-10-13 14:17:07,721 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 16:42:01] 2025-10-13 14:17:07,747 | INFO     | did not find any defunct processes belonging to 1718639
[2025-10-13 16:42:01] 2025-10-13 14:17:07,773 | INFO     | did not find any defunct processes belonging to 1718639
[2025-10-13 16:42:01] 2025-10-13 14:17:07,773 | INFO     | ready for new job
[2025-10-13 16:42:01] 2025-10-13 14:17:07,773 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 16:42:01] 2025-10-13 14:17:07,775 | INFO     | ***************************************
[2025-10-13 16:42:01] 2025-10-13 14:17:07,775 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 16:42:01] 2025-10-13 14:17:07,775 | INFO     | ***************************************
[2025-10-13 16:42:01] 2025-10-13 14:17:07,775 | INFO     | 
[2025-10-13 16:42:01] 2025-10-13 14:17:07,781 | INFO     | architecture information:
[2025-10-13 16:42:01] 2025-10-13 14:17:07,781 | INFO     | executing command: cat /etc/os-release
[2025-10-13 16:42:01] 2025-10-13 14:17:07,818 | INFO     | cat /etc/os-release:
[2025-10-13 16:42:01] NAME="CentOS Linux"
[2025-10-13 16:42:01] VERSION="7 (Core)"
[2025-10-13 16:42:01] ID="centos"
[2025-10-13 16:42:01] ID_LIKE="rhel fedora"
[2025-10-13 16:42:01] VERSION_ID="7"
[2025-10-13 16:42:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 16:42:01] ANSI_COLOR="0;31"
[2025-10-13 16:42:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 16:42:01] HOME_URL="https://www.centos.org/"
[2025-10-13 16:42:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 16:42:01] 
[2025-10-13 16:42:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 16:42:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 16:42:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 16:42:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 16:42:01] 
[2025-10-13 16:42:01] 2025-10-13 14:17:07,818 | INFO     | ***************************************
[2025-10-13 16:42:01] 2025-10-13 14:17:08,322 | INFO     | executing command: df -mP /scratch/.boinc/slots/0
[2025-10-13 16:42:01] 2025-10-13 14:17:08,453 | INFO     | sufficient remaining disk space (1656426070016 B)
[2025-10-13 16:42:01] 2025-10-13 14:17:08,453 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 16:42:01] 2025-10-13 14:17:08,453 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 16:42:01] 2025-10-13 14:17:08,453 | INFO     | update_server=False
[2025-10-13 16:42:01] 2025-10-13 14:17:08,453 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 16:42:01] 2025-10-13 14:17:08,927 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 16:42:01] 2025-10-13 14:17:08,928 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 16:42:01] 2025-10-13 14:17:08,928 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:42:01] 2025-10-13 14:17:08,928 | INFO     | will abort loop
[2025-10-13 16:42:01] 2025-10-13 14:17:09,162 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 16:42:01] 2025-10-13 14:17:09,242 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 16:42:01] 2025-10-13 14:17:09,387 | INFO     | all data control threads have been joined
[2025-10-13 16:42:01] 2025-10-13 14:17:09,460 | INFO     | [job] retrieve thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:17:09,491 | INFO     | all payload control threads have been joined
[2025-10-13 16:42:01] 2025-10-13 14:17:09,547 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:17:09,934 | INFO     | [job] job monitor thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:17:10,020 | INFO     | [data] copytool_in thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:17:10,090 | INFO     | [job] validate thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:17:10,119 | INFO     | all job control threads have been joined
[2025-10-13 16:42:01] 2025-10-13 14:17:10,164 | INFO     | [payload] failed_post thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:17:10,229 | INFO     | [payload] validate_post thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:17:10,394 | INFO     | [data] control thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:17:10,495 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:17:10,499 | INFO     | [payload] control thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:17:10,525 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:17:10,691 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:42:01] 2025-10-13 14:17:10,866 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:17:11,126 | INFO     | [job] control thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:17:11,248 | INFO     | [data] copytool_out thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:17:11,698 | INFO     | [job] queue monitor thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:17:13,172 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:17:39,099 | INFO     | [monitor] cgroup control has ended
[2025-10-13 16:42:01] 2025-10-13 14:17:39,398 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140177694652224)>', '<ExcThread(monitor, started 140177045444352)>']
[2025-10-13 16:42:01] 2025-10-13 14:17:39,442 | INFO     | PID=1690700 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 16:42:01] 2025-10-13 14:17:39,443 | INFO     | .. there are 82 such processes running
[2025-10-13 16:42:01] 2025-10-13 14:17:39,443 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 16:42:01] 2025-10-13 14:17:39,443 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 16:42:01] 2025-10-13 14:17:39,443 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 16:42:01] 2025-10-13 14:17:39,443 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 16:42:01] 2025-10-13 14:17:39,443 | INFO     | [monitor] control thread has ended
[2025-10-13 16:42:01] 2025-10-13 14:17:44,424 | INFO     | all workflow threads have been joined
[2025-10-13 16:42:01] 2025-10-13 14:17:44,424 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 16:42:01] 2025-10-13 14:17:44,424 | INFO     | traces error code: 0
[2025-10-13 16:42:01] 2025-10-13 14:17:44,424 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 16:42:01] 2025-10-13 14:17:44,654 [wrapper] ==== pilot stdout END ====
[2025-10-13 16:42:01] 2025-10-13 14:17:44,683 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 16:42:01] 2025-10-13 14:17:44,710 [wrapper] pilotpid: 1690700
[2025-10-13 16:42:01] 2025-10-13 14:17:44,729 [wrapper] Pilot exit status: 0
[2025-10-13 16:42:01] 2025-10-13 14:17:44,799 [wrapper] pandaids: 6840962050
[2025-10-13 16:42:01] 2025-10-13 14:17:44,992 [wrapper] cleanup supervisor_pilot 1959027 1690701
[2025-10-13 16:42:01] 2025-10-13 14:17:45,000 [wrapper] Test setup, not cleaning
[2025-10-13 16:42:01] 2025-10-13 14:17:45,023 [wrapper] apfmon messages muted
[2025-10-13 16:42:01] 2025-10-13 14:17:45,057 [wrapper] ==== wrapper stdout END ====
[2025-10-13 16:42:01] 2025-10-13 14:17:45,061 [wrapper] ==== wrapper stderr END ====
[2025-10-13 16:42:01]  *** Error codes and diagnostics ***
[2025-10-13 16:42:01]     "exeErrorCode": 0,
[2025-10-13 16:42:01]     "exeErrorDiag": "",
[2025-10-13 16:42:01]     "pilotErrorCode": 0,
[2025-10-13 16:42:01]     "pilotErrorDiag": "",
[2025-10-13 16:42:01]  *** Listing of results directory ***
[2025-10-13 16:42:01] total 405660
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc    557409 Oct 13 01:11 pilot3.tar.gz
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc      5112 Oct 13 01:15 queuedata.json
[2025-10-13 16:42:01] -rwx------ 1 boinc boinc     36292 Oct 13 01:16 runpilot2-wrapper.sh
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc       100 Oct 13 14:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 16:42:01] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 14:39 run_atlas
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc       105 Oct 13 14:39 job.xml
[2025-10-13 16:42:01] -rw-r--r-- 2 boinc boinc 222205582 Oct 13 14:39 EVNT.46676267._004651.pool.root.1
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc      6665 Oct 13 14:39 init_data.xml
[2025-10-13 16:42:01] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:39 start_atlas.sh
[2025-10-13 16:42:01] drwxrwx--x 2 boinc boinc      4096 Oct 13 14:39 shared
[2025-10-13 16:42:01] -rw-r--r-- 2 boinc boinc    569679 Oct 13 14:39 input.tar.gz
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc         0 Oct 13 14:39 boinc_lockfile
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc      2549 Oct 13 14:41 pandaJob.out
[2025-10-13 16:42:01] -rw------- 1 boinc boinc    972497 Oct 13 14:42 agis_schedconf.cvmfs.json
[2025-10-13 16:42:01] -rw------- 1 boinc boinc   1560580 Oct 13 14:42 agis_ddmendpoints.agis.ALL.json
[2025-10-13 16:42:01] drwx------ 5 boinc boinc      4096 Oct 13 14:42 pilot3
[2025-10-13 16:42:01] -rw------- 1 boinc boinc 186886278 Oct 13 16:15 HITS.46676269._092037.pool.root.1
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc       528 Oct 13 16:16 boinc_task_state.xml
[2025-10-13 16:42:01] -rw------- 1 boinc boinc      1018 Oct 13 16:16 memory_monitor_summary.json
[2025-10-13 16:42:01] -rw------- 1 boinc boinc    404382 Oct 13 16:16 log.46676269._092037.job.log.tgz.1
[2025-10-13 16:42:01] -rw------- 1 boinc boinc        95 Oct 13 16:16 pilot_heartbeat.json
[2025-10-13 16:42:01] -rw------- 1 boinc boinc      7789 Oct 13 16:17 heartbeat.json
[2025-10-13 16:42:01] -rw------- 1 boinc boinc      5013 Oct 13 16:17 pilotlog.txt
[2025-10-13 16:42:01] -rw------- 1 boinc boinc    795360 Oct 13 16:17 log.46676269._092037.job.log.1
[2025-10-13 16:42:01] -rw------- 1 boinc boinc       357 Oct 13 16:17 output.list
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc       620 Oct 13 16:17 runtime_log
[2025-10-13 16:42:01] -rw------- 1 boinc boinc   1218560 Oct 13 16:17 result.tar.gz
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc      8764 Oct 13 16:17 runtime_log.err
[2025-10-13 16:42:01] -rw------- 1 boinc boinc       663 Oct 13 16:17 GCgKDmlTKS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmkGVMDmwGVncm.diag
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc        25 Oct 13 16:41 wrapper_checkpoint.txt
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc      8192 Oct 13 16:42 boinc_mmap_file
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc     22365 Oct 13 16:42 stderr.txt
[2025-10-13 16:42:01] HITS file was successfully produced:
[2025-10-13 16:42:01] -rw------- 1 boinc boinc 186886278 Oct 13 16:15 shared/HITS.pool.root.1
[2025-10-13 16:42:01]  *** Contents of shared directory: ***
[2025-10-13 16:42:01] total 401284
[2025-10-13 16:42:01] -rw-r--r-- 2 boinc boinc 222205582 Oct 13 14:39 ATLAS.root_0
[2025-10-13 16:42:01] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:39 start_atlas.sh
[2025-10-13 16:42:01] -rw-r--r-- 2 boinc boinc    569679 Oct 13 14:39 input.tar.gz
[2025-10-13 16:42:01] -rw------- 1 boinc boinc 186886278 Oct 13 16:15 HITS.pool.root.1
[2025-10-13 16:42:01] -rw------- 1 boinc boinc   1218560 Oct 13 16:17 result.tar.gz
16:42:03 (1672749): run_atlas exited; CPU time 36347.406174
16:42:03 (1672749): called boinc_finish(0)

</stderr_txt>
]]>

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