Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:59:28 (1756510): wrapper (7.7.26015): starting
14:59:28 (1756510): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 14:59:28] Arguments: --nthreads 12
[2025-10-13 14:59:28] Threads: 12
[2025-10-13 14:59:28] Checking for CVMFS
[2025-10-13 14:59:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 14:59:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 14:59:29] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 14:59:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 14:59:30] 2.13.2.0 8216 26366 237964 151661 1 342 30153432 46080000 50922 130560 0 178357614 99.897 49078776 22762 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-13 14:59:30] CVMFS is ok
[2025-10-13 14:59:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 14:59:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 14:59:30] Further information can be found at the LHC@home message board.
[2025-10-13 14:59:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 14:59:30] Checking for apptainer binary...
[2025-10-13 14:59:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 14:59:30] Running /usr/bin/apptainer --version
[2025-10-13 14:59:30] apptainer version 1.4.2-1.el9
[2025-10-13 14:59:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 14:59:31] mff2103.farm.particle.cz
[2025-10-13 14:59:31] apptainer works
[2025-10-13 14:59:31] Set ATHENA_PROC_NUMBER=12
[2025-10-13 14:59:31] Set ATHENA_CORE_NUMBER=12
[2025-10-13 14:59:31] Starting ATLAS job with PandaID=6840969139
[2025-10-13 14:59:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 16:42:01]  *** The last 200 lines of the pilot log: ***
[2025-10-13 16:42:01]  storage_token=
[2025-10-13 16:42:01]  surl=/scratch/.boinc/slots/3/PanDA_Pilot-6840969139/log.46676269._092140.job.log.tgz.1
[2025-10-13 16:42:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/96/30/log.46676269._092140.job.log.tgz.1
[2025-10-13 16:42:01]  workdir=None
[2025-10-13 16:42:01] ]
[2025-10-13 16:42:01] 2025-10-13 14:38:32,086 | INFO     | transferring file log.46676269._092140.job.log.tgz.1 from /scratch/.boinc/slots/3/PanDA_Pilot-6840969139/log.46676269._092140.job.log.tgz.1 to /scratch/.boinc/slot
[2025-10-13 16:42:01] 2025-10-13 14:38:32,086 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/3/PanDA_Pilot-6840969139/log.46676269._092140.job.log.tgz.1 /scratch/.boinc/slots/3/log.46676269._092140.j
[2025-10-13 16:42:01] 2025-10-13 14:38:32,111 | INFO     | adding to output.list: log.46676269._092140.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/96/30/log.46676269._092140.job.log.tg
[2025-10-13 16:42:01] 2025-10-13 14:38:32,112 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 16:42:01] 2025-10-13 14:38:32,112 | INFO     | summary of transferred files:
[2025-10-13 16:42:01] 2025-10-13 14:38:32,112 | INFO     |  -- lfn=log.46676269._092140.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 16:42:01] 2025-10-13 14:38:32,113 | INFO     | stage-out finished correctly
[2025-10-13 16:42:01] 2025-10-13 14:38:32,865 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 16:42:01] 2025-10-13 14:38:32,946 | INFO     | job 6840969139 has state=finished
[2025-10-13 16:42:01] 2025-10-13 14:38:32,946 | INFO     | preparing for final server update for job 6840969139 in state='finished'
[2025-10-13 16:42:01] 2025-10-13 14:38:32,947 | INFO     | this job has now completed (state=finished)
[2025-10-13 16:42:01] 2025-10-13 14:38:32,947 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 16:42:01] 2025-10-13 14:38:32,947 | INFO     | log transfer has been attempted: DONE
[2025-10-13 16:42:01] 2025-10-13 14:38:32,947 | INFO     | job 6840969139 has finished - writing final server update
[2025-10-13 16:42:01] 2025-10-13 14:38:32,947 | INFO     | total number of processed events: 400 (read)
[2025-10-13 16:42:01] 2025-10-13 14:38:32,948 | INFO     | executing command: lscpu
[2025-10-13 16:42:01] 2025-10-13 14:38:33,024 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 16:42:01] 2025-10-13 14:38:33,599 | INFO     | time since job start (5858s) is within the limit (172800.0s)
[2025-10-13 16:42:01] 2025-10-13 14:38:34,487 | WARNING  | process 1802505 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 16:42:01] 2025-10-13 14:38:34,487 | INFO     | using path: /scratch/.boinc/slots/3/PanDA_Pilot-6840969139/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 16:42:01] 2025-10-13 14:38:35,050 | INFO     | number of running child processes to parent process 1802505: 1
[2025-10-13 16:42:01] 2025-10-13 14:38:35,051 | INFO     | maximum number of monitored processes: 7
[2025-10-13 16:42:01] 2025-10-13 14:38:35,604 | INFO     | time since job start (5860s) is within the limit (172800.0s)
[2025-10-13 16:42:01] 2025-10-13 14:38:37,387 | INFO     | PID=1765765 has CPU usage=18.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 16:42:01] 2025-10-13 14:38:37,388 | INFO     | .. there are 79 such processes running
[2025-10-13 16:42:01] 2025-10-13 14:38:37,615 | INFO     | monitor loop #418: job 0:6840969139 is in state 'finished'
[2025-10-13 16:42:01] 2025-10-13 14:38:37,615 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:42:01] 2025-10-13 14:38:38,389 | INFO     | time since job start (5863s) is within the limit (172800.0s)
[2025-10-13 16:42:01] 2025-10-13 14:38:40,058 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 16:42:01] 2025-10-13 14:38:40,071 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2984.6742499999987
[2025-10-13 16:42:01] 2025-10-13 14:38:40,087 | INFO     | using path: /scratch/.boinc/slots/3/PanDA_Pilot-6840969139/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 16:42:01] 2025-10-13 14:38:40,088 | INFO     | extracted standard info from prmon json
[2025-10-13 16:42:01] 2025-10-13 14:38:40,088 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 16:42:01] 2025-10-13 14:38:40,088 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 16:42:01] 2025-10-13 14:38:40,088 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 16:42:01] 2025-10-13 14:38:40,088 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 16:42:01] 2025-10-13 14:38:40,090 | INFO     | fitting pss+swap vs Time
[2025-10-13 16:42:01] 2025-10-13 14:38:40,090 | INFO     | sum of square deviations: 204163828.0
[2025-10-13 16:42:01] 2025-10-13 14:38:40,091 | INFO     | sum of deviations: 10578089544.000002
[2025-10-13 16:42:01] 2025-10-13 14:38:40,091 | INFO     | mean x: 1760363555.0
[2025-10-13 16:42:01] 2025-10-13 14:38:40,091 | INFO     | mean y: 2637439.471264368
[2025-10-13 16:42:01] 2025-10-13 14:38:40,091 | INFO     | -- intersect: -91204916304.0066
[2025-10-13 16:42:01] 2025-10-13 14:38:40,091 | INFO     | intersect: -91204916304.0066
[2025-10-13 16:42:01] 2025-10-13 14:38:40,091 | INFO     | chi2: 0.20039546877754869
[2025-10-13 16:42:01] 2025-10-13 14:38:40,091 | INFO     | -- intersect: -91204916304.0066
[2025-10-13 16:42:01] 2025-10-13 14:38:40,091 | INFO     | current memory leak: 51.81 B/s (using 87 data points, chi2=0.20)
[2025-10-13 16:42:01] 2025-10-13 14:38:40,091 | INFO     | could have reported an average CPU frequency of 2884 MHz (7 samples)
[2025-10-13 16:42:01] 2025-10-13 14:38:40,092 | INFO     | ..............................
[2025-10-13 16:42:01] 2025-10-13 14:38:40,092 | INFO     | . Timing measurements:
[2025-10-13 16:42:01] 2025-10-13 14:38:40,092 | INFO     | . get job = 0 s
[2025-10-13 16:42:01] 2025-10-13 14:38:40,092 | INFO     | . initial setup = 4 s
[2025-10-13 16:42:01] 2025-10-13 14:38:40,092 | INFO     | . payload setup = 50 s
[2025-10-13 16:42:01] 2025-10-13 14:38:40,092 | INFO     | . stage-in = 0 s
[2025-10-13 16:42:01] 2025-10-13 14:38:40,092 | INFO     | . payload execution = 5720 s
[2025-10-13 16:42:01] 2025-10-13 14:38:40,092 | INFO     | . stage-out = 0 s
[2025-10-13 16:42:01] 2025-10-13 14:38:40,092 | INFO     | . log creation = 0 s
[2025-10-13 16:42:01] 2025-10-13 14:38:40,092 | INFO     | ..............................
[2025-10-13 16:42:01] 2025-10-13 14:38:40,177 | INFO     | 
[2025-10-13 16:42:01] 2025-10-13 14:38:40,177 | INFO     | job summary report
[2025-10-13 16:42:01] 2025-10-13 14:38:40,177 | INFO     | --------------------------------------------------
[2025-10-13 16:42:01] 2025-10-13 14:38:40,177 | INFO     | PanDA job id: 6840969139
[2025-10-13 16:42:01] 2025-10-13 14:38:40,177 | INFO     | task id: 46676269
[2025-10-13 16:42:01] 2025-10-13 14:38:40,177 | INFO     | errors: (none)
[2025-10-13 16:42:01] 2025-10-13 14:38:40,177 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 16:42:01] 2025-10-13 14:38:40,177 | INFO     | pilot state: finished 
[2025-10-13 16:42:01] 2025-10-13 14:38:40,178 | INFO     | transexitcode: 0
[2025-10-13 16:42:01] 2025-10-13 14:38:40,178 | INFO     | exeerrorcode: 0
[2025-10-13 16:42:01] 2025-10-13 14:38:40,178 | INFO     | exeerrordiag: 
[2025-10-13 16:42:01] 2025-10-13 14:38:40,178 | INFO     | exitcode: 0
[2025-10-13 16:42:01] 2025-10-13 14:38:40,178 | INFO     | exitmsg: OK
[2025-10-13 16:42:01] 2025-10-13 14:38:40,178 | INFO     | cpuconsumptiontime: 39059 s
[2025-10-13 16:42:01] 2025-10-13 14:38:40,178 | INFO     | nevents: 400
[2025-10-13 16:42:01] 2025-10-13 14:38:40,178 | INFO     | neventsw: 0
[2025-10-13 16:42:01] 2025-10-13 14:38:40,178 | INFO     | pid: 1802505
[2025-10-13 16:42:01] 2025-10-13 14:38:40,178 | INFO     | pgrp: 1802505
[2025-10-13 16:42:01] 2025-10-13 14:38:40,178 | INFO     | corecount: 12
[2025-10-13 16:42:01] 2025-10-13 14:38:40,178 | INFO     | event service: False
[2025-10-13 16:42:01] 2025-10-13 14:38:40,178 | INFO     | sizes: {0: 2348858, 11: 2348858, 22: 2348886, 33: 2348914, 35: 2349232, 43: 2349260, 5773: 2376180, 5775: 2385180, 5776: 2385236, 5783: 2385430}
[2025-10-13 16:42:01] 2025-10-13 14:38:40,178 | INFO     | --------------------------------------------------
[2025-10-13 16:42:01] 2025-10-13 14:38:40,178 | INFO     | 
[2025-10-13 16:42:01] 2025-10-13 14:38:40,178 | INFO     | executing command: ls -lF /scratch/.boinc/slots/3
[2025-10-13 16:42:01] 2025-10-13 14:38:40,204 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:38:40,204 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:38:40,204 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:38:40,204 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:38:40,204 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:38:40,205 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:38:40,205 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:38:40,205 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:38:40,205 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:38:40,205 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:38:40,205 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:38:40,205 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:38:40,205 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:38:40,205 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:38:40,205 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:38:40,205 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:38:40,205 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:38:40,205 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 16:42:01] 2025-10-13 14:38:40,205 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:38:40,206 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 16:42:01] 2025-10-13 14:38:40,206 | INFO     | job 6840969139 has completed (purged errors)
[2025-10-13 16:42:01] 2025-10-13 14:38:40,206 | INFO     | overall cleanup function is called
[2025-10-13 16:42:01] 2025-10-13 14:38:41,215 | INFO     | --- collectZombieJob: --- 10, [1802505]
[2025-10-13 16:42:01] 2025-10-13 14:38:41,216 | INFO     | zombie collector waiting for pid 1802505
[2025-10-13 16:42:01] 2025-10-13 14:38:41,216 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 16:42:01] 2025-10-13 14:38:41,216 | INFO     | collected zombie processes
[2025-10-13 16:42:01] 2025-10-13 14:38:41,216 | INFO     | will attempt to kill all subprocesses of pid=1802505
[2025-10-13 16:42:01] 2025-10-13 14:38:41,788 | INFO     | process IDs to be killed: [1802505] (in reverse order)
[2025-10-13 16:42:01] 2025-10-13 14:38:41,992 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 16:42:01] 2025-10-13 14:38:41,993 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 16:42:01] 2025-10-13 14:38:42,018 | INFO     | did not find any defunct processes belonging to 1802505
[2025-10-13 16:42:01] 2025-10-13 14:38:42,044 | INFO     | did not find any defunct processes belonging to 1802505
[2025-10-13 16:42:01] 2025-10-13 14:38:42,044 | INFO     | ready for new job
[2025-10-13 16:42:01] 2025-10-13 14:38:42,044 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 16:42:01] 2025-10-13 14:38:42,046 | INFO     | ***************************************
[2025-10-13 16:42:01] 2025-10-13 14:38:42,046 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 16:42:01] 2025-10-13 14:38:42,046 | INFO     | ***************************************
[2025-10-13 16:42:01] 2025-10-13 14:38:42,046 | INFO     | 
[2025-10-13 16:42:01] 2025-10-13 14:38:42,052 | INFO     | architecture information:
[2025-10-13 16:42:01] 2025-10-13 14:38:42,052 | INFO     | executing command: cat /etc/os-release
[2025-10-13 16:42:01] 2025-10-13 14:38:42,074 | INFO     | cat /etc/os-release:
[2025-10-13 16:42:01] NAME="CentOS Linux"
[2025-10-13 16:42:01] VERSION="7 (Core)"
[2025-10-13 16:42:01] ID="centos"
[2025-10-13 16:42:01] ID_LIKE="rhel fedora"
[2025-10-13 16:42:01] VERSION_ID="7"
[2025-10-13 16:42:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 16:42:01] ANSI_COLOR="0;31"
[2025-10-13 16:42:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 16:42:01] HOME_URL="https://www.centos.org/"
[2025-10-13 16:42:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 16:42:01] 
[2025-10-13 16:42:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 16:42:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 16:42:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 16:42:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 16:42:01] 
[2025-10-13 16:42:01] 2025-10-13 14:38:42,074 | INFO     | ***************************************
[2025-10-13 16:42:01] 2025-10-13 14:38:42,577 | INFO     | executing command: df -mP /scratch/.boinc/slots/3
[2025-10-13 16:42:01] 2025-10-13 14:38:42,600 | INFO     | sufficient remaining disk space (1655954210816 B)
[2025-10-13 16:42:01] 2025-10-13 14:38:42,600 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 16:42:01] 2025-10-13 14:38:42,600 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 16:42:01] 2025-10-13 14:38:42,600 | INFO     | update_server=False
[2025-10-13 16:42:01] 2025-10-13 14:38:42,601 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 16:42:01] 2025-10-13 14:38:42,625 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 16:42:01] 2025-10-13 14:38:42,626 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 16:42:01] 2025-10-13 14:38:42,626 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:42:01] 2025-10-13 14:38:42,626 | INFO     | will abort loop
[2025-10-13 16:42:01] 2025-10-13 14:38:42,711 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 16:42:01] 2025-10-13 14:38:43,358 | INFO     | all data control threads have been joined
[2025-10-13 16:42:01] 2025-10-13 14:38:43,457 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 16:42:01] 2025-10-13 14:38:43,606 | INFO     | [job] retrieve thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:38:43,631 | INFO     | [job] job monitor thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:38:43,951 | INFO     | all payload control threads have been joined
[2025-10-13 16:42:01] 2025-10-13 14:38:44,170 | INFO     | all job control threads have been joined
[2025-10-13 16:42:01] 2025-10-13 14:38:44,351 | INFO     | [payload] validate_post thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:38:44,357 | INFO     | [payload] failed_post thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:38:44,364 | INFO     | [data] control thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:38:44,477 | INFO     | [job] validate thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:38:44,610 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:38:44,716 | INFO     | [data] copytool_out thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:38:44,814 | INFO     | [data] copytool_in thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:38:44,846 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:38:44,950 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:38:44,957 | INFO     | [payload] control thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:38:45,175 | INFO     | [job] control thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:38:45,185 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:42:01] 2025-10-13 14:38:46,191 | INFO     | [job] queue monitor thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:38:47,463 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:38:52,703 | INFO     | job.realtimelogging is not enabled
[2025-10-13 16:42:01] 2025-10-13 14:38:53,709 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 16:42:01] 2025-10-13 14:39:04,996 | INFO     | [monitor] cgroup control has ended
[2025-10-13 16:42:01] 2025-10-13 14:39:05,683 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139894062466880)>', '<ExcThread(monitor, started 139893544032000)>']
[2025-10-13 16:42:01] 2025-10-13 14:39:10,708 | INFO     | all workflow threads have been joined
[2025-10-13 16:42:01] 2025-10-13 14:39:10,709 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 16:42:01] 2025-10-13 14:39:10,709 | INFO     | traces error code: 0
[2025-10-13 16:42:01] 2025-10-13 14:39:10,709 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 16:42:01] 2025-10-13 14:39:12,169 | INFO     | PID=1765765 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 16:42:01] 2025-10-13 14:39:12,170 | INFO     | .. there are 79 such processes running
[2025-10-13 16:42:01] 2025-10-13 14:39:12,170 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 16:42:01] 2025-10-13 14:39:12,170 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 16:42:01] 2025-10-13 14:39:12,170 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 16:42:01] 2025-10-13 14:39:12,170 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 16:42:01] 2025-10-13 14:39:12,170 | INFO     | [monitor] control thread has ended
[2025-10-13 16:42:01] 2025-10-13 14:39:12,316 [wrapper] ==== pilot stdout END ====
[2025-10-13 16:42:01] 2025-10-13 14:39:12,321 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 16:42:01] 2025-10-13 14:39:12,325 [wrapper] pilotpid: 1765765
[2025-10-13 16:42:01] 2025-10-13 14:39:12,330 [wrapper] Pilot exit status: 0
[2025-10-13 16:42:01] 2025-10-13 14:39:12,347 [wrapper] pandaids: 6840969139
[2025-10-13 16:42:01] 2025-10-13 14:39:12,492 [wrapper] cleanup supervisor_pilot 1982303 1765766
[2025-10-13 16:42:01] 2025-10-13 14:39:12,497 [wrapper] Test setup, not cleaning
[2025-10-13 16:42:01] 2025-10-13 14:39:12,501 [wrapper] apfmon messages muted
[2025-10-13 16:42:01] 2025-10-13 14:39:12,505 [wrapper] ==== wrapper stdout END ====
[2025-10-13 16:42:01] 2025-10-13 14:39:12,509 [wrapper] ==== wrapper stderr END ====
[2025-10-13 16:42:01]  *** Error codes and diagnostics ***
[2025-10-13 16:42:01]     "exeErrorCode": 0,
[2025-10-13 16:42:01]     "exeErrorDiag": "",
[2025-10-13 16:42:01]     "pilotErrorCode": 0,
[2025-10-13 16:42:01]     "pilotErrorDiag": "",
[2025-10-13 16:42:01]  *** Listing of results directory ***
[2025-10-13 16:42:01] total 420020
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc    557409 Oct 13 01:11 pilot3.tar.gz
[2025-10-13 16:42:01] -rwx------ 1 boinc boinc     36292 Oct 13 01:23 runpilot2-wrapper.sh
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc      5112 Oct 13 01:23 queuedata.json
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc       100 Oct 13 14:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 16:42:01] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 14:59 run_atlas
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc       105 Oct 13 14:59 job.xml
[2025-10-13 16:42:01] -rw-r--r-- 2 boinc boinc 222443920 Oct 13 14:59 EVNT.46676267._004654.pool.root.1
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc      6665 Oct 13 14:59 init_data.xml
[2025-10-13 16:42:01] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:59 start_atlas.sh
[2025-10-13 16:42:01] drwxrwx--x 2 boinc boinc      4096 Oct 13 14:59 shared
[2025-10-13 16:42:01] -rw-r--r-- 2 boinc boinc    569679 Oct 13 14:59 input.tar.gz
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc         0 Oct 13 14:59 boinc_lockfile
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc      2550 Oct 13 14:59 pandaJob.out
[2025-10-13 16:42:01] -rw------- 1 boinc boinc    972497 Oct 13 15:00 agis_schedconf.cvmfs.json
[2025-10-13 16:42:01] -rw------- 1 boinc boinc   1560580 Oct 13 15:00 agis_ddmendpoints.agis.ALL.json
[2025-10-13 16:42:01] drwx------ 5 boinc boinc      4096 Oct 13 15:00 pilot3
[2025-10-13 16:42:01] -rw------- 1 boinc boinc 201278728 Oct 13 16:37 HITS.46676269._092140.pool.root.1
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc       528 Oct 13 16:38 boinc_task_state.xml
[2025-10-13 16:42:01] -rw------- 1 boinc boinc      1016 Oct 13 16:38 memory_monitor_summary.json
[2025-10-13 16:42:01] -rw------- 1 boinc boinc    414164 Oct 13 16:38 log.46676269._092140.job.log.tgz.1
[2025-10-13 16:42:01] -rw------- 1 boinc boinc        95 Oct 13 16:38 pilot_heartbeat.json
[2025-10-13 16:42:01] -rw------- 1 boinc boinc      7769 Oct 13 16:38 heartbeat.json
[2025-10-13 16:42:01] -rw------- 1 boinc boinc       823 Oct 13 16:39 pilotlog.txt
[2025-10-13 16:42:01] -rw------- 1 boinc boinc    822102 Oct 13 16:39 log.46676269._092140.job.log.1
[2025-10-13 16:42:01] -rw------- 1 boinc boinc       357 Oct 13 16:39 output.list
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc       620 Oct 13 16:39 runtime_log
[2025-10-13 16:42:01] -rw------- 1 boinc boinc   1259520 Oct 13 16:39 result.tar.gz
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc      8764 Oct 13 16:39 runtime_log.err
[2025-10-13 16:42:01] -rw------- 1 boinc boinc       663 Oct 13 16:39 hMRNDm1aKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmY2lNDmtoMJan.diag
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc        25 Oct 13 16:41 wrapper_checkpoint.txt
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc      8192 Oct 13 16:42 boinc_mmap_file
[2025-10-13 16:42:01] -rw-r--r-- 1 boinc boinc     22297 Oct 13 16:42 stderr.txt
[2025-10-13 16:42:01] HITS file was successfully produced:
[2025-10-13 16:42:01] -rw------- 1 boinc boinc 201278728 Oct 13 16:37 shared/HITS.pool.root.1
[2025-10-13 16:42:01]  *** Contents of shared directory: ***
[2025-10-13 16:42:01] total 415612
[2025-10-13 16:42:01] -rw-r--r-- 2 boinc boinc 222443920 Oct 13 14:59 ATLAS.root_0
[2025-10-13 16:42:01] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:59 start_atlas.sh
[2025-10-13 16:42:01] -rw-r--r-- 2 boinc boinc    569679 Oct 13 14:59 input.tar.gz
[2025-10-13 16:42:01] -rw------- 1 boinc boinc 201278728 Oct 13 16:37 HITS.pool.root.1
[2025-10-13 16:42:01] -rw------- 1 boinc boinc   1259520 Oct 13 16:39 result.tar.gz
16:42:03 (1756510): run_atlas exited; CPU time 39327.397726
16:42:03 (1756510): called boinc_finish(0)

</stderr_txt>
]]>

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