Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:59 (2124623): wrapper (7.7.26015): starting
00:00:59 (2124623): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 00:00:59] Arguments: --nthreads 12
[2025-10-13 00:00:59] Threads: 12
[2025-10-13 00:00:59] Checking for CVMFS
[2025-10-13 00:01:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:01:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:01:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:01:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:01:03] 2.13.2.0 2984399 27701 131844 151647 0 65 40020220 40960001 12258 16776704 0 33898337 99.764 20021116 31107 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 00:01:03] CVMFS is ok
[2025-10-13 00:01:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:01:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:01:03] Further information can be found at the LHC@home message board.
[2025-10-13 00:01:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:01:03] Checking for apptainer binary...
[2025-10-13 00:01:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:01:03] Running /usr/bin/apptainer --version
[2025-10-13 00:01:03] apptainer version 1.4.3-1.el9
[2025-10-13 00:01:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:01:04] c-211-10.aglt2.org
[2025-10-13 00:01:04] apptainer works
[2025-10-13 00:01:04] Set ATHENA_PROC_NUMBER=12
[2025-10-13 00:01:04] Set ATHENA_CORE_NUMBER=12
[2025-10-13 00:01:04] Starting ATLAS job with PandaID=6840961548
[2025-10-13 00:01:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:55:54]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:55:54] 2025-10-13 07:55:19,259 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 03:55:54] 2025-10-13 07:55:19,974 | INFO     | time since job start (13975s) is within the limit (172800.0s)
[2025-10-13 03:55:54] 2025-10-13 07:55:20,328 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 03:55:54] 2025-10-13 07:55:20,355 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2360.1243750000003
[2025-10-13 03:55:54] 2025-10-13 07:55:20,374 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6840961548/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 03:55:54] 2025-10-13 07:55:20,375 | INFO     | extracted standard info from prmon json
[2025-10-13 03:55:54] 2025-10-13 07:55:20,376 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 03:55:54] 2025-10-13 07:55:20,376 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 03:55:54] 2025-10-13 07:55:20,376 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 03:55:54] 2025-10-13 07:55:20,376 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 03:55:54] 2025-10-13 07:55:20,382 | INFO     | fitting pss+swap vs Time
[2025-10-13 03:55:54] 2025-10-13 07:55:20,383 | INFO     | sum of square deviations: 3627299627.5154266
[2025-10-13 03:55:54] 2025-10-13 07:55:20,385 | INFO     | sum of deviations: 190740541888.51114
[2025-10-13 03:55:54] 2025-10-13 07:55:20,385 | INFO     | mean x: 1760335174.277533
[2025-10-13 03:55:54] 2025-10-13 07:55:20,386 | INFO     | mean y: 2517482.1982378853
[2025-10-13 03:55:54] 2025-10-13 07:55:20,386 | INFO     | -- intersect: -92564217975.7965
[2025-10-13 03:55:54] 2025-10-13 07:55:20,386 | INFO     | intersect: -92564217975.7965
[2025-10-13 03:55:54] 2025-10-13 07:55:20,386 | INFO     | chi2: 5.897299485616332
[2025-10-13 03:55:54] 2025-10-13 07:55:20,387 | INFO     | sum of square deviations: 3392955766.6711774
[2025-10-13 03:55:54] 2025-10-13 07:55:20,389 | INFO     | sum of deviations: 201984636760.8243
[2025-10-13 03:55:54] 2025-10-13 07:55:20,390 | INFO     | mean x: 1760335021.8063064
[2025-10-13 03:55:54] 2025-10-13 07:55:20,390 | INFO     | mean y: 2524600.554054054
[2025-10-13 03:55:54] 2025-10-13 07:55:20,390 | INFO     | -- intersect: -104791246497.0705
[2025-10-13 03:55:54] 2025-10-13 07:55:20,390 | INFO     | intersect: -104791246497.0705
[2025-10-13 03:55:54] 2025-10-13 07:55:20,391 | INFO     | chi2: 5.035044929644328
[2025-10-13 03:55:54] 2025-10-13 07:55:20,391 | INFO     | current chi2=5.035044929644328 (change=14.621176321044334 %)
[2025-10-13 03:55:54] 2025-10-13 07:55:20,391 | INFO     | right removable region: 221
[2025-10-13 03:55:54] 2025-10-13 07:55:20,392 | INFO     | sum of square deviations: 3392792715.279285
[2025-10-13 03:55:54] 2025-10-13 07:55:20,394 | INFO     | sum of deviations: 119236060566.55864
[2025-10-13 03:55:54] 2025-10-13 07:55:20,394 | INFO     | mean x: 1760335326.801802
[2025-10-13 03:55:54] 2025-10-13 07:55:20,394 | INFO     | mean y: 2563905.603603604
[2025-10-13 03:55:54] 2025-10-13 07:55:20,394 | INFO     | -- intersect: -61862532862.24137
[2025-10-13 03:55:54] 2025-10-13 07:55:20,395 | INFO     | intersect: -61862532862.24137
[2025-10-13 03:55:54] 2025-10-13 07:55:20,395 | INFO     | chi2: 2.4070213500503534
[2025-10-13 03:55:54] 2025-10-13 07:55:20,395 | INFO     | current chi2=2.4070213500503534 (change=59.184346056679985 %)
[2025-10-13 03:55:54] 2025-10-13 07:55:20,396 | INFO     | sum of square deviations: 3168625363.419362
[2025-10-13 03:55:54] 2025-10-13 07:55:20,398 | INFO     | sum of deviations: 86832209828.12906
[2025-10-13 03:55:54] 2025-10-13 07:55:20,398 | INFO     | mean x: 1760335479.3225806
[2025-10-13 03:55:54] 2025-10-13 07:55:20,399 | INFO     | mean y: 2585899.341013825
[2025-10-13 03:55:54] 2025-10-13 07:55:20,399 | INFO     | -- intersect: -48237203339.57651
[2025-10-13 03:55:54] 2025-10-13 07:55:20,399 | INFO     | intersect: -48237203339.57651
[2025-10-13 03:55:54] 2025-10-13 07:55:20,399 | INFO     | chi2: 1.8172537846718155
[2025-10-13 03:55:54] 2025-10-13 07:55:20,400 | INFO     | current chi2=1.8172537846718155 (change=24.50196652249056 %)
[2025-10-13 03:55:54] 2025-10-13 07:55:20,400 | INFO     | left removable region: 20
[2025-10-13 03:55:54] 2025-10-13 07:55:20,400 | INFO     | sum of square deviations: 2518145008.5472527
[2025-10-13 03:55:54] 2025-10-13 07:55:20,401 | INFO     | sum of deviations: 52341368838.432846
[2025-10-13 03:55:54] 2025-10-13 07:55:20,402 | INFO     | mean x: 1760335601.4079602
[2025-10-13 03:55:54] 2025-10-13 07:55:20,402 | INFO     | mean y: 2630532.104477612
[2025-10-13 03:55:54] 2025-10-13 07:55:20,402 | INFO     | -- intersect: -36587150707.64798
[2025-10-13 03:55:54] 2025-10-13 07:55:20,402 | INFO     | intersect: -36587150707.64798
[2025-10-13 03:55:54] 2025-10-13 07:55:20,403 | INFO     | chi2: 0.3551399895855367
[2025-10-13 03:55:54] 2025-10-13 07:55:20,403 | INFO     | -- intersect: -36587150707.64798
[2025-10-13 03:55:54] 2025-10-13 07:55:20,403 | INFO     | current memory leak: 20.79 B/s (using 201 data points, chi2=0.36)
[2025-10-13 03:55:54] 2025-10-13 07:55:20,404 | INFO     | could have reported an average CPU frequency of 2386 MHz (11 samples)
[2025-10-13 03:55:54] 2025-10-13 07:55:20,404 | INFO     | ..............................
[2025-10-13 03:55:54] 2025-10-13 07:55:20,404 | INFO     | . Timing measurements:
[2025-10-13 03:55:54] 2025-10-13 07:55:20,405 | INFO     | . get job = 0 s
[2025-10-13 03:55:54] 2025-10-13 07:55:20,405 | INFO     | . initial setup = 6 s
[2025-10-13 03:55:54] 2025-10-13 07:55:20,405 | INFO     | . payload setup = 43 s
[2025-10-13 03:55:54] 2025-10-13 07:55:20,405 | INFO     | . stage-in = 0 s
[2025-10-13 03:55:54] 2025-10-13 07:55:20,405 | INFO     | . payload execution = 13845 s
[2025-10-13 03:55:54] 2025-10-13 07:55:20,405 | INFO     | . stage-out = 3 s
[2025-10-13 03:55:54] 2025-10-13 07:55:20,405 | INFO     | . log creation = 0 s
[2025-10-13 03:55:54] 2025-10-13 07:55:20,405 | INFO     | ..............................
[2025-10-13 03:55:54] 2025-10-13 07:55:20,543 | INFO     | 
[2025-10-13 03:55:54] 2025-10-13 07:55:20,543 | INFO     | job summary report
[2025-10-13 03:55:54] 2025-10-13 07:55:20,543 | INFO     | --------------------------------------------------
[2025-10-13 03:55:54] 2025-10-13 07:55:20,543 | INFO     | PanDA job id: 6840961548
[2025-10-13 03:55:54] 2025-10-13 07:55:20,545 | INFO     | task id: 46676269
[2025-10-13 03:55:54] 2025-10-13 07:55:20,545 | INFO     | errors: (none)
[2025-10-13 03:55:54] 2025-10-13 07:55:20,545 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 03:55:54] 2025-10-13 07:55:20,545 | INFO     | pilot state: finished 
[2025-10-13 03:55:54] 2025-10-13 07:55:20,545 | INFO     | transexitcode: 0
[2025-10-13 03:55:54] 2025-10-13 07:55:20,546 | INFO     | exeerrorcode: 0
[2025-10-13 03:55:54] 2025-10-13 07:55:20,546 | INFO     | exeerrordiag: 
[2025-10-13 03:55:54] 2025-10-13 07:55:20,546 | INFO     | exitcode: 0
[2025-10-13 03:55:54] 2025-10-13 07:55:20,546 | INFO     | exitmsg: OK
[2025-10-13 03:55:54] 2025-10-13 07:55:20,546 | INFO     | cpuconsumptiontime: 58075 s
[2025-10-13 03:55:54] 2025-10-13 07:55:20,546 | INFO     | nevents: 400
[2025-10-13 03:55:54] 2025-10-13 07:55:20,546 | INFO     | neventsw: 0
[2025-10-13 03:55:54] 2025-10-13 07:55:20,546 | INFO     | pid: 2137001
[2025-10-13 03:55:54] 2025-10-13 07:55:20,546 | INFO     | pgrp: 2137001
[2025-10-13 03:55:54] 2025-10-13 07:55:20,565 | INFO     | corecount: 12
[2025-10-13 03:55:54] 2025-10-13 07:55:20,565 | INFO     | event service: False
[2025-10-13 03:55:54] 2025-10-13 07:55:20,565 | INFO     | sizes: {0: 2348026, 1: 2348711, 2: 2348739, 3: 2348938, 4: 2348938, 15: 2348966, 25: 2349122, 36: 2349440, 13893: 2380234, 13894: 2380233, 13898: 2389623, 13910: 2
[2025-10-13 03:55:54] 2025-10-13 07:55:20,565 | INFO     | --------------------------------------------------
[2025-10-13 03:55:54] 2025-10-13 07:55:20,566 | INFO     | 
[2025-10-13 03:55:54] 2025-10-13 07:55:20,566 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-13 03:55:54] 2025-10-13 07:55:20,620 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 03:55:54] 2025-10-13 07:55:20,621 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 03:55:54] 2025-10-13 07:55:20,621 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 03:55:54] 2025-10-13 07:55:20,621 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 03:55:54] 2025-10-13 07:55:20,622 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 03:55:54] 2025-10-13 07:55:20,622 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 03:55:54] 2025-10-13 07:55:20,622 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 03:55:54] 2025-10-13 07:55:20,622 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 03:55:54] 2025-10-13 07:55:20,622 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 03:55:54] 2025-10-13 07:55:20,622 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 03:55:54] 2025-10-13 07:55:20,622 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 03:55:54] 2025-10-13 07:55:20,623 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 03:55:54] 2025-10-13 07:55:20,623 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 03:55:54] 2025-10-13 07:55:20,623 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 03:55:54] 2025-10-13 07:55:20,623 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 03:55:54] 2025-10-13 07:55:20,623 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 03:55:54] 2025-10-13 07:55:20,623 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 03:55:54] 2025-10-13 07:55:20,623 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 03:55:54] 2025-10-13 07:55:20,624 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 03:55:54] 2025-10-13 07:55:20,636 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 03:55:54] 2025-10-13 07:55:20,636 | INFO     | job 6840961548 has completed (purged errors)
[2025-10-13 03:55:54] 2025-10-13 07:55:20,637 | INFO     | overall cleanup function is called
[2025-10-13 03:55:54] 2025-10-13 07:55:21,651 | INFO     | --- collectZombieJob: --- 10, [2137001]
[2025-10-13 03:55:54] 2025-10-13 07:55:21,651 | INFO     | zombie collector waiting for pid 2137001
[2025-10-13 03:55:54] 2025-10-13 07:55:21,651 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 03:55:54] 2025-10-13 07:55:21,652 | INFO     | collected zombie processes
[2025-10-13 03:55:54] 2025-10-13 07:55:21,652 | INFO     | will attempt to kill all subprocesses of pid=2137001
[2025-10-13 03:55:54] 2025-10-13 07:55:22,056 | INFO     | process IDs to be killed: [2137001] (in reverse order)
[2025-10-13 03:55:54] 2025-10-13 07:55:22,153 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:55:54] 2025-10-13 07:55:22,153 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:55:54] 2025-10-13 07:55:22,174 | INFO     | did not find any defunct processes belonging to 2137001
[2025-10-13 03:55:54] 2025-10-13 07:55:22,184 | INFO     | did not find any defunct processes belonging to 2137001
[2025-10-13 03:55:54] 2025-10-13 07:55:22,185 | INFO     | ready for new job
[2025-10-13 03:55:54] 2025-10-13 07:55:22,185 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:55:54] 2025-10-13 07:55:22,188 | INFO     | ***************************************
[2025-10-13 03:55:54] 2025-10-13 07:55:22,188 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:55:54] 2025-10-13 07:55:22,188 | INFO     | ***************************************
[2025-10-13 03:55:54] 2025-10-13 07:55:22,189 | INFO     | 
[2025-10-13 03:55:54] 2025-10-13 07:55:22,192 | INFO     | architecture information:
[2025-10-13 03:55:54] 2025-10-13 07:55:22,192 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:55:54] 2025-10-13 07:55:22,216 | INFO     | cat /etc/os-release:
[2025-10-13 03:55:54] NAME="CentOS Linux"
[2025-10-13 03:55:54] VERSION="7 (Core)"
[2025-10-13 03:55:54] ID="centos"
[2025-10-13 03:55:54] ID_LIKE="rhel fedora"
[2025-10-13 03:55:54] VERSION_ID="7"
[2025-10-13 03:55:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:55:54] ANSI_COLOR="0;31"
[2025-10-13 03:55:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:55:54] HOME_URL="https://www.centos.org/"
[2025-10-13 03:55:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:55:54] 
[2025-10-13 03:55:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:55:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:55:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:55:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:55:54] 
[2025-10-13 03:55:54] 2025-10-13 07:55:22,217 | INFO     | ***************************************
[2025-10-13 03:55:54] 2025-10-13 07:55:22,720 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-13 03:55:54] 2025-10-13 07:55:22,775 | INFO     | sufficient remaining disk space (63188238336 B)
[2025-10-13 03:55:54] 2025-10-13 07:55:22,776 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:55:54] 2025-10-13 07:55:22,776 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:55:54] 2025-10-13 07:55:22,776 | INFO     | update_server=False
[2025-10-13 03:55:54] 2025-10-13 07:55:22,776 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:55:54] 2025-10-13 07:55:22,784 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:55:54] 2025-10-13 07:55:22,784 | INFO     | aborting loop
[2025-10-13 03:55:54] 2025-10-13 07:55:23,156 | INFO     | all job control threads have been joined
[2025-10-13 03:55:54] 2025-10-13 07:55:23,448 | INFO     | all data control threads have been joined
[2025-10-13 03:55:54] 2025-10-13 07:55:23,747 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:55:54] 2025-10-13 07:55:23,783 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:55:54] 2025-10-13 07:55:23,790 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:55:54] 2025-10-13 07:55:23,819 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:55:54] 2025-10-13 07:55:23,871 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:55:54] 2025-10-13 07:55:23,937 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:55:54] 2025-10-13 07:55:24,059 | INFO     | all payload control threads have been joined
[2025-10-13 03:55:54] 2025-10-13 07:55:24,162 | INFO     | [job] control thread has finished
[2025-10-13 03:55:54] 2025-10-13 07:55:24,197 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:55:54] 2025-10-13 07:55:24,324 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:55:54] 2025-10-13 07:55:24,454 | INFO     | [data] control thread has finished
[2025-10-13 03:55:54] 2025-10-13 07:55:24,507 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:55:54] 2025-10-13 07:55:25,065 | INFO     | [payload] control thread has finished
[2025-10-13 03:55:54] 2025-10-13 07:55:25,074 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:55:54] 2025-10-13 07:55:25,201 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:55:54] 2025-10-13 07:55:25,249 | INFO     | [job] validate thread has finished
[2025-10-13 03:55:54] 2025-10-13 07:55:25,557 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:55:54] 2025-10-13 07:55:25,880 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:55:54] 2025-10-13 07:55:26,562 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:55:54] 2025-10-13 07:55:27,756 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:55:54] 2025-10-13 07:55:47,510 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:55:54] 2025-10-13 07:55:47,808 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140024944908096)>', '<ExcThread(monitor, started 140023651366656)>']
[2025-10-13 03:55:54] 2025-10-13 07:55:52,834 | INFO     | all workflow threads have been joined
[2025-10-13 03:55:54] 2025-10-13 07:55:52,834 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:55:54] 2025-10-13 07:55:52,834 | INFO     | traces error code: 0
[2025-10-13 03:55:54] 2025-10-13 07:55:52,835 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:55:54] 2025-10-13 07:55:53,627 | INFO     | PID=2128801 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 03:55:54] 2025-10-13 07:55:53,627 | INFO     | .. there are 9 such processes running
[2025-10-13 03:55:54] 2025-10-13 07:55:53,629 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:55:54] 2025-10-13 07:55:53,629 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:55:54] 2025-10-13 07:55:53,629 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:55:54] 2025-10-13 07:55:53,630 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:55:54] 2025-10-13 07:55:53,630 | CRITICAL | thread 'MainThread' is not alive
[2025-10-13 03:55:54] 2025-10-13 07:55:53,630 | INFO     | [monitor] control thread has ended
[2025-10-13 03:55:54] 2025-10-13 07:55:53,830 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:55:54] 2025-10-13 07:55:53,834 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:55:54] 2025-10-13 07:55:53,838 [wrapper] pilotpid: 2128801
[2025-10-13 03:55:54] 2025-10-13 07:55:53,842 [wrapper] Pilot exit status: 0
[2025-10-13 03:55:54] 2025-10-13 07:55:53,861 [wrapper] pandaids: 6840961548
[2025-10-13 03:55:54] 2025-10-13 07:55:53,962 [wrapper] cleanup supervisor_pilot 2441428 2128802
[2025-10-13 03:55:54] 2025-10-13 07:55:53,969 [wrapper] Test setup, not cleaning
[2025-10-13 03:55:54] 2025-10-13 07:55:53,973 [wrapper] apfmon messages muted
[2025-10-13 03:55:54] 2025-10-13 07:55:53,983 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:55:54] 2025-10-13 07:55:53,987 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:55:54]  *** Error codes and diagnostics ***
[2025-10-13 03:55:54]     "exeErrorCode": 0,
[2025-10-13 03:55:54]     "exeErrorDiag": "",
[2025-10-13 03:55:54]     "pilotErrorCode": 0,
[2025-10-13 03:55:54]     "pilotErrorDiag": "",
[2025-10-13 03:55:54]  *** Listing of results directory ***
[2025-10-13 03:55:54] total 411680
[2025-10-13 03:55:54] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 18:57 pilot3.tar.gz
[2025-10-13 03:55:54] -rwx------. 1 boincer umatlas     36292 Oct 12 19:06 runpilot2-wrapper.sh
[2025-10-13 03:55:54] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 19:06 queuedata.json
[2025-10-13 03:55:54] -rw-r--r--. 1 boincer umatlas       100 Oct 13 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:55:54] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 00:00 run_atlas
[2025-10-13 03:55:54] -rw-r--r--. 1 boincer umatlas       105 Oct 13 00:00 job.xml
[2025-10-13 03:55:54] -rw-r--r--. 2 boincer umatlas 222456503 Oct 13 00:00 EVNT.46676267._004644.pool.root.1
[2025-10-13 03:55:54] -rw-r--r--. 2 boincer umatlas    569671 Oct 13 00:00 input.tar.gz
[2025-10-13 03:55:54] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 00:00 shared
[2025-10-13 03:55:54] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:00 start_atlas.sh
[2025-10-13 03:55:54] -rw-r--r--. 1 boincer umatlas         0 Oct 13 00:00 boinc_lockfile
[2025-10-13 03:55:54] -rw-r--r--. 1 boincer umatlas      2548 Oct 13 00:01 pandaJob.out
[2025-10-13 03:55:54] -rw-------. 1 boincer umatlas    974373 Oct 13 00:02 agis_schedconf.cvmfs.json
[2025-10-13 03:55:54] drwx------. 5 boincer umatlas      4096 Oct 13 00:02 pilot3
[2025-10-13 03:55:54] -rw-r--r--. 1 boincer umatlas      6614 Oct 13 03:46 init_data.xml
[2025-10-13 03:55:54] -rw-------. 1 boincer umatlas 190420620 Oct 13 03:54 HITS.46676269._091847.pool.root.1
[2025-10-13 03:55:54] -rw-r--r--. 1 boincer umatlas       531 Oct 13 03:54 boinc_task_state.xml
[2025-10-13 03:55:54] -rw-------. 1 boincer umatlas      1037 Oct 13 03:55 memory_monitor_summary.json
[2025-10-13 03:55:54] -rw-------. 1 boincer umatlas   1560580 Oct 13 03:55 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:55:54] -rw-------. 1 boincer umatlas    506873 Oct 13 03:55 log.46676269._091847.job.log.tgz.1
[2025-10-13 03:55:54] -rw-------. 1 boincer umatlas      7843 Oct 13 03:55 heartbeat.json
[2025-10-13 03:55:54] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 03:55 boinc_mmap_file
[2025-10-13 03:55:54] -rw-r--r--. 1 boincer umatlas        28 Oct 13 03:55 wrapper_checkpoint.txt
[2025-10-13 03:55:54] -rw-------. 1 boincer umatlas        95 Oct 13 03:55 pilot_heartbeat.json
[2025-10-13 03:55:54] -rw-------. 1 boincer umatlas       892 Oct 13 03:55 pilotlog.txt
[2025-10-13 03:55:54] -rw-------. 1 boincer umatlas   1886538 Oct 13 03:55 log.46676269._091847.job.log.1
[2025-10-13 03:55:54] -rw-------. 1 boincer umatlas       357 Oct 13 03:55 output.list
[2025-10-13 03:55:54] -rw-r--r--. 1 boincer umatlas       620 Oct 13 03:55 runtime_log
[2025-10-13 03:55:54] -rw-------. 1 boincer umatlas   2416640 Oct 13 03:55 result.tar.gz
[2025-10-13 03:55:54] -rw-------. 1 boincer umatlas       655 Oct 13 03:55 g2SMDmGKKS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmGFVMDmVyJrHn.diag
[2025-10-13 03:55:54] -rw-r--r--. 1 boincer umatlas      8706 Oct 13 03:55 runtime_log.err
[2025-10-13 03:55:54] -rw-r--r--. 1 boincer umatlas     21227 Oct 13 03:55 stderr.txt
[2025-10-13 03:55:54] HITS file was successfully produced:
[2025-10-13 03:55:54] -rw-------. 1 boincer umatlas 190420620 Oct 13 03:54 shared/HITS.pool.root.1
[2025-10-13 03:55:54]  *** Contents of shared directory: ***
[2025-10-13 03:55:54] total 406144
[2025-10-13 03:55:54] -rw-r--r--. 2 boincer umatlas 222456503 Oct 13 00:00 ATLAS.root_0
[2025-10-13 03:55:54] -rw-r--r--. 2 boincer umatlas    569671 Oct 13 00:00 input.tar.gz
[2025-10-13 03:55:54] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:00 start_atlas.sh
[2025-10-13 03:55:54] -rw-------. 1 boincer umatlas 190420620 Oct 13 03:54 HITS.pool.root.1
[2025-10-13 03:55:54] -rw-------. 1 boincer umatlas   2416640 Oct 13 03:55 result.tar.gz
03:55:55 (2124623): run_atlas exited; CPU time 58521.668258
03:55:55 (2124623): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN