Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:54 (3143743): wrapper (7.7.26015): starting
00:01:54 (3143743): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 00:01:54] Arguments: --nthreads 12
[2025-10-13 00:01:54] Threads: 12
[2025-10-13 00:01:54] Checking for CVMFS
[2025-10-13 00:01:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:01:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:01:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:01:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:01:56] 2.13.2.0 276976 137224 368348 151647 1 631 27344468 32935937 41032 16776704 0 266026252 99.601 262589411 20569 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 00:01:56] CVMFS is ok
[2025-10-13 00:01:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:01:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:01:57] Further information can be found at the LHC@home message board.
[2025-10-13 00:01:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:01:57] Checking for apptainer binary...
[2025-10-13 00:01:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:01:57] Running /usr/bin/apptainer --version
[2025-10-13 00:01:57] apptainer version 1.4.3-1.el9
[2025-10-13 00:01:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:01:58] c6-8-25-3.aglt2.org
[2025-10-13 00:01:58] apptainer works
[2025-10-13 00:01:58] Set ATHENA_PROC_NUMBER=12
[2025-10-13 00:01:58] Set ATHENA_CORE_NUMBER=12
[2025-10-13 00:01:58] Starting ATLAS job with PandaID=6840961507
[2025-10-13 00:01:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:57:31]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:57:31] 2025-10-13 09:56:28,890 | INFO     | mean x: 1760338678.5339234
[2025-10-13 05:57:31] 2025-10-13 09:56:28,891 | INFO     | mean y: 2318148.5398230087
[2025-10-13 05:57:31] 2025-10-13 09:56:28,891 | INFO     | -- intersect: -34582826332.163055
[2025-10-13 05:57:31] 2025-10-13 09:56:28,891 | INFO     | intersect: -34582826332.163055
[2025-10-13 05:57:31] 2025-10-13 09:56:28,891 | INFO     | chi2: 5.638536620604964
[2025-10-13 05:57:31] 2025-10-13 09:56:28,891 | INFO     | current chi2=5.638536620604964 (change=21.483358326453445 %)
[2025-10-13 05:57:31] 2025-10-13 09:56:28,892 | INFO     | right removable region: 338
[2025-10-13 05:57:31] 2025-10-13 09:56:28,892 | INFO     | sum of square deviations: 12079721828.359827
[2025-10-13 05:57:31] 2025-10-13 09:56:28,916 | INFO     | sum of deviations: 99751096366.32747
[2025-10-13 05:57:31] 2025-10-13 09:56:28,917 | INFO     | mean x: 1760338983.5339234
[2025-10-13 05:57:31] 2025-10-13 09:56:28,917 | INFO     | mean y: 2334075.3628318585
[2025-10-13 05:57:31] 2025-10-13 09:56:28,917 | INFO     | -- intersect: -14534072149.790913
[2025-10-13 05:57:31] 2025-10-13 09:56:28,917 | INFO     | intersect: -14534072149.790913
[2025-10-13 05:57:31] 2025-10-13 09:56:28,917 | INFO     | chi2: 3.726915076400971
[2025-10-13 05:57:31] 2025-10-13 09:56:28,918 | INFO     | current chi2=3.726915076400971 (change=48.10269484955169 %)
[2025-10-13 05:57:31] 2025-10-13 09:56:28,918 | INFO     | sum of square deviations: 11552986979.413157
[2025-10-13 05:57:31] 2025-10-13 09:56:28,922 | INFO     | sum of deviations: 44326720534.77841
[2025-10-13 05:57:31] 2025-10-13 09:56:28,922 | INFO     | mean x: 1760339136.0419161
[2025-10-13 05:57:31] 2025-10-13 09:56:28,922 | INFO     | mean y: 2350111.6586826346
[2025-10-13 05:57:31] 2025-10-13 09:56:28,922 | INFO     | -- intersect: -6751752621.150498
[2025-10-13 05:57:31] 2025-10-13 09:56:28,922 | INFO     | intersect: -6751752621.150498
[2025-10-13 05:57:31] 2025-10-13 09:56:28,923 | INFO     | chi2: 2.6772783823539523
[2025-10-13 05:57:31] 2025-10-13 09:56:28,927 | INFO     | current chi2=2.6772783823539523 (change=28.163686924163507 %)
[2025-10-13 05:57:31] 2025-10-13 09:56:28,928 | INFO     | sum of square deviations: 11041828053.611006
[2025-10-13 05:57:31] 2025-10-13 09:56:28,931 | INFO     | sum of deviations: -1962787602.2917938
[2025-10-13 05:57:31] 2025-10-13 09:56:28,931 | INFO     | mean x: 1760339288.5440729
[2025-10-13 05:57:31] 2025-10-13 09:56:28,931 | INFO     | mean y: 2363899.1580547113
[2025-10-13 05:57:31] 2025-10-13 09:56:28,932 | INFO     | -- intersect: 315280575.1473642
[2025-10-13 05:57:31] 2025-10-13 09:56:28,932 | INFO     | intersect: 315280575.1473642
[2025-10-13 05:57:31] 2025-10-13 09:56:28,932 | INFO     | chi2: 1.9156341561762265
[2025-10-13 05:57:31] 2025-10-13 09:56:28,932 | INFO     | current chi2=1.9156341561762265 (change=28.448450904386824 %)
[2025-10-13 05:57:31] 2025-10-13 09:56:28,933 | INFO     | sum of square deviations: 10546011266.47838
[2025-10-13 05:57:31] 2025-10-13 09:56:28,935 | INFO     | sum of deviations: -26527339213.907413
[2025-10-13 05:57:31] 2025-10-13 09:56:28,938 | INFO     | mean x: 1760339441.0401235
[2025-10-13 05:57:31] 2025-10-13 09:56:28,938 | INFO     | mean y: 2371439.685185185
[2025-10-13 05:57:31] 2025-10-13 09:56:28,938 | INFO     | -- intersect: 4430312990.679285
[2025-10-13 05:57:31] 2025-10-13 09:56:28,938 | INFO     | intersect: 4430312990.679285
[2025-10-13 05:57:31] 2025-10-13 09:56:28,939 | INFO     | chi2: 1.690727447911669
[2025-10-13 05:57:31] 2025-10-13 09:56:28,939 | INFO     | current chi2=1.690727447911669 (change=11.740587707701506 %)
[2025-10-13 05:57:31] 2025-10-13 09:56:28,939 | INFO     | left removable region: 40
[2025-10-13 05:57:31] 2025-10-13 09:56:28,940 | INFO     | sum of square deviations: 8205517831.785214
[2025-10-13 05:57:31] 2025-10-13 09:56:28,942 | INFO     | sum of deviations: 8854251441.798656
[2025-10-13 05:57:31] 2025-10-13 09:56:28,942 | INFO     | mean x: 1760339868.0268457
[2025-10-13 05:57:31] 2025-10-13 09:56:28,942 | INFO     | mean y: 2386681.775167785
[2025-10-13 05:57:31] 2025-10-13 09:56:28,942 | INFO     | -- intersect: -1897126808.3004873
[2025-10-13 05:57:31] 2025-10-13 09:56:28,942 | INFO     | intersect: -1897126808.3004873
[2025-10-13 05:57:31] 2025-10-13 09:56:28,943 | INFO     | chi2: 0.06572227440090621
[2025-10-13 05:57:31] 2025-10-13 09:56:28,943 | INFO     | -- intersect: -1897126808.3004873
[2025-10-13 05:57:31] 2025-10-13 09:56:28,943 | INFO     | current memory leak: 1.08 B/s (using 298 data points, chi2=0.07)
[2025-10-13 05:57:31] 2025-10-13 09:56:28,944 | INFO     | could have reported an average CPU frequency of 2652 MHz (15 samples)
[2025-10-13 05:57:31] 2025-10-13 09:56:28,944 | INFO     | ..............................
[2025-10-13 05:57:31] 2025-10-13 09:56:28,944 | INFO     | . Timing measurements:
[2025-10-13 05:57:31] 2025-10-13 09:56:28,944 | INFO     | . get job = 0 s
[2025-10-13 05:57:31] 2025-10-13 09:56:28,944 | INFO     | . initial setup = 7 s
[2025-10-13 05:57:31] 2025-10-13 09:56:28,944 | INFO     | . payload setup = 54 s
[2025-10-13 05:57:31] 2025-10-13 09:56:28,945 | INFO     | . stage-in = 0 s
[2025-10-13 05:57:31] 2025-10-13 09:56:28,945 | INFO     | . payload execution = 20996 s
[2025-10-13 05:57:31] 2025-10-13 09:56:28,945 | INFO     | . stage-out = 8 s
[2025-10-13 05:57:31] 2025-10-13 09:56:28,945 | INFO     | . log creation = 1 s
[2025-10-13 05:57:31] 2025-10-13 09:56:28,945 | INFO     | ..............................
[2025-10-13 05:57:31] 2025-10-13 09:56:29,325 | INFO     | time since job start (21188s) is within the limit (172800.0s)
[2025-10-13 05:57:31] 2025-10-13 09:56:29,381 | INFO     | 
[2025-10-13 05:57:31] 2025-10-13 09:56:29,381 | INFO     | job summary report
[2025-10-13 05:57:31] 2025-10-13 09:56:29,381 | INFO     | --------------------------------------------------
[2025-10-13 05:57:31] 2025-10-13 09:56:29,382 | INFO     | PanDA job id: 6840961507
[2025-10-13 05:57:31] 2025-10-13 09:56:29,382 | INFO     | task id: 46676269
[2025-10-13 05:57:31] 2025-10-13 09:56:29,382 | INFO     | errors: (none)
[2025-10-13 05:57:31] 2025-10-13 09:56:29,382 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:57:31] 2025-10-13 09:56:29,382 | INFO     | pilot state: finished 
[2025-10-13 05:57:31] 2025-10-13 09:56:29,382 | INFO     | transexitcode: 0
[2025-10-13 05:57:31] 2025-10-13 09:56:29,382 | INFO     | exeerrorcode: 0
[2025-10-13 05:57:31] 2025-10-13 09:56:29,382 | INFO     | exeerrordiag: 
[2025-10-13 05:57:31] 2025-10-13 09:56:29,382 | INFO     | exitcode: 0
[2025-10-13 05:57:31] 2025-10-13 09:56:29,382 | INFO     | exitmsg: OK
[2025-10-13 05:57:31] 2025-10-13 09:56:29,383 | INFO     | cpuconsumptiontime: 48841 s
[2025-10-13 05:57:31] 2025-10-13 09:56:29,383 | INFO     | nevents: 400
[2025-10-13 05:57:31] 2025-10-13 09:56:29,383 | INFO     | neventsw: 0
[2025-10-13 05:57:31] 2025-10-13 09:56:29,383 | INFO     | pid: 3173887
[2025-10-13 05:57:31] 2025-10-13 09:56:29,383 | INFO     | pgrp: 3173887
[2025-10-13 05:57:31] 2025-10-13 09:56:29,383 | INFO     | corecount: 12
[2025-10-13 05:57:31] 2025-10-13 09:56:29,383 | INFO     | event service: False
[2025-10-13 05:57:31] 2025-10-13 09:56:29,383 | INFO     | sizes: {0: 2348028, 1: 2348713, 2: 2348884, 3: 2348940, 15: 2348940, 26: 2348968, 36: 2349386, 37: 2349414, 21056: 2382781, 21065: 2391779, 21066: 2391835, 21111: 
[2025-10-13 05:57:31] 2025-10-13 09:56:29,383 | INFO     | --------------------------------------------------
[2025-10-13 05:57:31] 2025-10-13 09:56:29,383 | INFO     | 
[2025-10-13 05:57:31] 2025-10-13 09:56:29,383 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-10-13 05:57:31] 2025-10-13 09:56:29,457 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:57:31] 2025-10-13 09:56:29,458 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:57:31] 2025-10-13 09:56:29,458 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:57:31] 2025-10-13 09:56:29,458 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:57:31] 2025-10-13 09:56:29,458 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:57:31] 2025-10-13 09:56:29,458 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:57:31] 2025-10-13 09:56:29,458 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:57:31] 2025-10-13 09:56:29,458 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:57:31] 2025-10-13 09:56:29,458 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:57:31] 2025-10-13 09:56:29,458 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:57:31] 2025-10-13 09:56:29,458 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:57:31] 2025-10-13 09:56:29,459 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:57:31] 2025-10-13 09:56:29,459 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:57:31] 2025-10-13 09:56:29,459 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:57:31] 2025-10-13 09:56:29,459 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:57:31] 2025-10-13 09:56:29,459 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:57:31] 2025-10-13 09:56:29,465 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:57:31] 2025-10-13 09:56:29,465 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:57:31] 2025-10-13 09:56:29,465 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:57:31] 2025-10-13 09:56:29,465 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:57:31] 2025-10-13 09:56:29,466 | INFO     | job 6840961507 has completed (purged errors)
[2025-10-13 05:57:31] 2025-10-13 09:56:29,466 | INFO     | overall cleanup function is called
[2025-10-13 05:57:31] 2025-10-13 09:56:30,495 | INFO     | --- collectZombieJob: --- 10, [3173887]
[2025-10-13 05:57:31] 2025-10-13 09:56:30,495 | INFO     | zombie collector waiting for pid 3173887
[2025-10-13 05:57:31] 2025-10-13 09:56:30,496 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:57:31] 2025-10-13 09:56:30,496 | INFO     | collected zombie processes
[2025-10-13 05:57:31] 2025-10-13 09:56:30,496 | INFO     | will attempt to kill all subprocesses of pid=3173887
[2025-10-13 05:57:31] 2025-10-13 09:56:35,438 | INFO     | PID=3152545 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:57:31] 2025-10-13 09:56:35,439 | INFO     | .. there are 40 such processes running
[2025-10-13 05:57:31] 2025-10-13 09:56:35,566 | INFO     | process IDs to be killed: [3173887] (in reverse order)
[2025-10-13 05:57:31] 2025-10-13 09:56:35,923 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:57:31] 2025-10-13 09:56:35,924 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:57:31] 2025-10-13 09:56:36,037 | INFO     | did not find any defunct processes belonging to 3173887
[2025-10-13 05:57:31] 2025-10-13 09:56:36,063 | INFO     | did not find any defunct processes belonging to 3173887
[2025-10-13 05:57:31] 2025-10-13 09:56:36,064 | INFO     | ready for new job
[2025-10-13 05:57:31] 2025-10-13 09:56:36,064 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:57:31] 2025-10-13 09:56:36,066 | INFO     | ***************************************
[2025-10-13 05:57:31] 2025-10-13 09:56:36,066 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:57:31] 2025-10-13 09:56:36,066 | INFO     | ***************************************
[2025-10-13 05:57:31] 2025-10-13 09:56:36,066 | INFO     | 
[2025-10-13 05:57:31] 2025-10-13 09:56:36,101 | INFO     | architecture information:
[2025-10-13 05:57:31] 2025-10-13 09:56:36,106 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:57:31] 2025-10-13 09:56:36,170 | INFO     | cat /etc/os-release:
[2025-10-13 05:57:31] NAME="CentOS Linux"
[2025-10-13 05:57:31] VERSION="7 (Core)"
[2025-10-13 05:57:31] ID="centos"
[2025-10-13 05:57:31] ID_LIKE="rhel fedora"
[2025-10-13 05:57:31] VERSION_ID="7"
[2025-10-13 05:57:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:57:31] ANSI_COLOR="0;31"
[2025-10-13 05:57:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:57:31] HOME_URL="https://www.centos.org/"
[2025-10-13 05:57:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:57:31] 
[2025-10-13 05:57:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:57:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:57:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:57:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:57:31] 
[2025-10-13 05:57:31] 2025-10-13 09:56:36,179 | INFO     | ***************************************
[2025-10-13 05:57:31] 2025-10-13 09:56:36,684 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-10-13 05:57:31] 2025-10-13 09:56:36,781 | INFO     | sufficient remaining disk space (74141663232 B)
[2025-10-13 05:57:31] 2025-10-13 09:56:36,781 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:57:31] 2025-10-13 09:56:36,781 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:57:31] 2025-10-13 09:56:36,781 | INFO     | update_server=False
[2025-10-13 05:57:31] 2025-10-13 09:56:36,782 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:57:31] 2025-10-13 09:56:36,782 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:57:31] 2025-10-13 09:56:36,789 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 05:57:31] 2025-10-13 09:56:36,790 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 05:57:31] 2025-10-13 09:56:36,790 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:57:31] 2025-10-13 09:56:36,790 | INFO     | will abort loop
[2025-10-13 05:57:31] 2025-10-13 09:56:37,027 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:57:31] 2025-10-13 09:56:37,345 | INFO     | all job control threads have been joined
[2025-10-13 05:57:31] 2025-10-13 09:56:37,345 | INFO     | all data control threads have been joined
[2025-10-13 05:57:31] 2025-10-13 09:56:37,668 | INFO     | all payload control threads have been joined
[2025-10-13 05:57:31] 2025-10-13 09:56:37,799 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:57:31] 2025-10-13 09:56:37,802 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:57:31] 2025-10-13 09:56:38,194 | INFO     | [job] validate thread has finished
[2025-10-13 05:57:31] 2025-10-13 09:56:38,310 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:57:31] 2025-10-13 09:56:38,328 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:57:31] 2025-10-13 09:56:38,333 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:57:31] 2025-10-13 09:56:38,354 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:57:31] 2025-10-13 09:56:38,357 | INFO     | [job] control thread has finished
[2025-10-13 05:57:31] 2025-10-13 09:56:38,358 | INFO     | [data] control thread has finished
[2025-10-13 05:57:31] 2025-10-13 09:56:38,443 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:57:31] 2025-10-13 09:56:38,646 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:57:31] 2025-10-13 09:56:38,674 | INFO     | [payload] control thread has finished
[2025-10-13 05:57:31] 2025-10-13 09:56:38,770 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:57:31] 2025-10-13 09:56:39,034 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:57:31] 2025-10-13 09:56:39,352 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:57:31] 2025-10-13 09:56:39,465 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:57:31] 2025-10-13 09:56:40,832 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:57:31] 2025-10-13 09:56:58,638 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:57:31] 2025-10-13 09:57:00,619 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139707094091584)>', '<ExcThread(monitor, started 139706595522304)>']
[2025-10-13 05:57:31] 2025-10-13 09:57:05,645 | INFO     | all workflow threads have been joined
[2025-10-13 05:57:31] 2025-10-13 09:57:05,645 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:57:31] 2025-10-13 09:57:05,707 | INFO     | traces error code: 0
[2025-10-13 05:57:31] 2025-10-13 09:57:05,707 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:57:31] 2025-10-13 09:57:09,269 | INFO     | PID=3152545 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:57:31] 2025-10-13 09:57:09,269 | INFO     | .. there are 40 such processes running
[2025-10-13 05:57:31] 2025-10-13 09:57:09,274 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:57:31] 2025-10-13 09:57:09,274 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:57:31] 2025-10-13 09:57:09,274 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:57:31] 2025-10-13 09:57:09,274 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:57:31] 2025-10-13 09:57:09,275 | INFO     | [monitor] control thread has ended
[2025-10-13 05:57:31] 2025-10-13 09:57:09,733 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:57:31] 2025-10-13 09:57:09,751 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:57:31] 2025-10-13 09:57:09,792 [wrapper] pilotpid: 3152545
[2025-10-13 05:57:31] 2025-10-13 09:57:09,795 [wrapper] Pilot exit status: 0
[2025-10-13 05:57:31] 2025-10-13 09:57:09,899 [wrapper] pandaids: 6840961507
[2025-10-13 05:57:31] 2025-10-13 09:57:10,788 [wrapper] cleanup supervisor_pilot  294267 3152546
[2025-10-13 05:57:31] 2025-10-13 09:57:10,807 [wrapper] Test setup, not cleaning
[2025-10-13 05:57:31] 2025-10-13 09:57:10,857 [wrapper] apfmon messages muted
[2025-10-13 05:57:31] 2025-10-13 09:57:10,867 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:57:31] 2025-10-13 09:57:10,871 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:57:31]  *** Error codes and diagnostics ***
[2025-10-13 05:57:31]     "exeErrorCode": 0,
[2025-10-13 05:57:31]     "exeErrorDiag": "",
[2025-10-13 05:57:31]     "pilotErrorCode": 0,
[2025-10-13 05:57:31]     "pilotErrorDiag": "",
[2025-10-13 05:57:31]  *** Listing of results directory ***
[2025-10-13 05:57:31] total 413176
[2025-10-13 05:57:31] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 18:57 pilot3.tar.gz
[2025-10-13 05:57:31] -rwx------. 1 boincer umatlas     36292 Oct 12 19:01 runpilot2-wrapper.sh
[2025-10-13 05:57:31] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 19:01 queuedata.json
[2025-10-13 05:57:31] -rw-r--r--. 1 boincer umatlas       100 Oct 13 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:57:31] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 00:01 run_atlas
[2025-10-13 05:57:31] -rw-r--r--. 1 boincer umatlas       105 Oct 13 00:01 job.xml
[2025-10-13 05:57:31] -rw-r--r--. 2 boincer umatlas 221370243 Oct 13 00:01 EVNT.46676267._004642.pool.root.1
[2025-10-13 05:57:31] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:01 start_atlas.sh
[2025-10-13 05:57:31] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 00:01 shared
[2025-10-13 05:57:31] -rw-r--r--. 2 boincer umatlas    569673 Oct 13 00:01 input.tar.gz
[2025-10-13 05:57:31] -rw-r--r--. 1 boincer umatlas         0 Oct 13 00:01 boinc_lockfile
[2025-10-13 05:57:31] -rw-r--r--. 1 boincer umatlas      2549 Oct 13 00:01 pandaJob.out
[2025-10-13 05:57:31] -rw-------. 1 boincer umatlas    974373 Oct 13 00:03 agis_schedconf.cvmfs.json
[2025-10-13 05:57:31] drwx------. 5 boincer umatlas      4096 Oct 13 00:03 pilot3
[2025-10-13 05:57:31] -rw-------. 1 boincer umatlas 191618990 Oct 13 05:52 HITS.46676269._091806.pool.root.1
[2025-10-13 05:57:31] -rw-r--r--. 1 boincer umatlas       531 Oct 13 05:53 boinc_task_state.xml
[2025-10-13 05:57:31] -rw-------. 1 boincer umatlas      1043 Oct 13 05:55 memory_monitor_summary.json
[2025-10-13 05:57:31] -rw-------. 1 boincer umatlas   1560580 Oct 13 05:55 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:57:31] -rw-------. 1 boincer umatlas    597735 Oct 13 05:55 log.46676269._091806.job.log.tgz.1
[2025-10-13 05:57:31] -rw-------. 1 boincer umatlas      7832 Oct 13 05:56 heartbeat.json
[2025-10-13 05:57:31] -rw-------. 1 boincer umatlas        95 Oct 13 05:57 pilot_heartbeat.json
[2025-10-13 05:57:31] -rw-------. 1 boincer umatlas       823 Oct 13 05:57 pilotlog.txt
[2025-10-13 05:57:31] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 05:57 boinc_mmap_file
[2025-10-13 05:57:31] -rw-------. 1 boincer umatlas   2510829 Oct 13 05:57 log.46676269._091806.job.log.1
[2025-10-13 05:57:31] -rw-------. 1 boincer umatlas       357 Oct 13 05:57 output.list
[2025-10-13 05:57:31] -rw-r--r--. 1 boincer umatlas        28 Oct 13 05:57 wrapper_checkpoint.txt
[2025-10-13 05:57:31] -rw-r--r--. 1 boincer umatlas       620 Oct 13 05:57 runtime_log
[2025-10-13 05:57:31] -rw-------. 1 boincer umatlas   3123200 Oct 13 05:57 result.tar.gz
[2025-10-13 05:57:31] -rw-r--r--. 1 boincer umatlas      8711 Oct 13 05:57 runtime_log.err
[2025-10-13 05:57:31] -rw-------. 1 boincer umatlas       657 Oct 13 05:57 JuCNDmNFKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3ylNDm7piafn.diag
[2025-10-13 05:57:31] -rw-r--r--. 1 boincer umatlas      6856 Oct 13 05:57 init_data.xml
[2025-10-13 05:57:31] -rw-r--r--. 1 boincer umatlas     21250 Oct 13 05:57 stderr.txt
[2025-10-13 05:57:31] HITS file was successfully produced:
[2025-10-13 05:57:31] -rw-------. 1 boincer umatlas 191618990 Oct 13 05:52 shared/HITS.pool.root.1
[2025-10-13 05:57:31]  *** Contents of shared directory: ***
[2025-10-13 05:57:31] total 406944
[2025-10-13 05:57:31] -rw-r--r--. 2 boincer umatlas 221370243 Oct 13 00:01 ATLAS.root_0
[2025-10-13 05:57:31] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:01 start_atlas.sh
[2025-10-13 05:57:31] -rw-r--r--. 2 boincer umatlas    569673 Oct 13 00:01 input.tar.gz
[2025-10-13 05:57:31] -rw-------. 1 boincer umatlas 191618990 Oct 13 05:52 HITS.pool.root.1
[2025-10-13 05:57:31] -rw-------. 1 boincer umatlas   3123200 Oct 13 05:57 result.tar.gz
05:57:33 (3143743): run_atlas exited; CPU time 49912.742286
05:57:33 (3143743): called boinc_finish(0)

</stderr_txt>
]]>

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