Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:53 (887312): wrapper (7.7.26015): starting
00:01:53 (887312): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 00:01:53] Arguments: --nthreads 12
[2025-10-13 00:01:53] Threads: 12
[2025-10-13 00:01:53] Checking for CVMFS
[2025-10-13 00:01:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:01:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:01:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:01:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:01:55] 2.13.2.0 2059728 130177 421008 151647 1 605 25171076 32935936 45892 16776704 0 306146977 99.637 288135073 20241 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 00:01:55] CVMFS is ok
[2025-10-13 00:01:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:01:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:01:55] Further information can be found at the LHC@home message board.
[2025-10-13 00:01:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:01:55] Checking for apptainer binary...
[2025-10-13 00:01:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:01:55] Running /usr/bin/apptainer --version
[2025-10-13 00:01:55] apptainer version 1.4.3-1.el9
[2025-10-13 00:01:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:01:56] c6-12-29-1.aglt2.org
[2025-10-13 00:01:56] apptainer works
[2025-10-13 00:01:56] Set ATHENA_PROC_NUMBER=12
[2025-10-13 00:01:56] Set ATHENA_CORE_NUMBER=12
[2025-10-13 00:01:56] Starting ATLAS job with PandaID=6840961503
[2025-10-13 00:01:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:42:32]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:42:32] 2025-10-13 09:41:24,531 | INFO     | chi2: 6.905959920370431
[2025-10-13 05:42:32] 2025-10-13 09:41:24,532 | INFO     | sum of square deviations: 10546538859.222208
[2025-10-13 05:42:32] 2025-10-13 09:41:24,537 | INFO     | sum of deviations: 237716590426.53702
[2025-10-13 05:42:32] 2025-10-13 09:41:24,538 | INFO     | mean x: 1760338235.0925925
[2025-10-13 05:42:32] 2025-10-13 09:41:24,538 | INFO     | mean y: 2223625.348765432
[2025-10-13 05:42:32] 2025-10-13 09:41:24,538 | INFO     | -- intersect: -39675400363.84875
[2025-10-13 05:42:32] 2025-10-13 09:41:24,538 | INFO     | intersect: -39675400363.84875
[2025-10-13 05:42:32] 2025-10-13 09:41:24,538 | INFO     | chi2: 6.160676112358188
[2025-10-13 05:42:32] 2025-10-13 09:41:24,539 | INFO     | current chi2=6.160676112358188 (change=10.791893040298243 %)
[2025-10-13 05:42:32] 2025-10-13 09:41:24,539 | INFO     | right removable region: 323
[2025-10-13 05:42:32] 2025-10-13 09:41:24,543 | INFO     | sum of square deviations: 10546460901.222212
[2025-10-13 05:42:32] 2025-10-13 09:41:24,546 | INFO     | sum of deviations: 129736481015.50003
[2025-10-13 05:42:32] 2025-10-13 09:41:24,546 | INFO     | mean x: 1760338540.0925925
[2025-10-13 05:42:32] 2025-10-13 09:41:24,546 | INFO     | mean y: 2247590.0833333335
[2025-10-13 05:42:32] 2025-10-13 09:41:24,546 | INFO     | -- intersect: -21652422135.29431
[2025-10-13 05:42:32] 2025-10-13 09:41:24,547 | INFO     | intersect: -21652422135.29431
[2025-10-13 05:42:32] 2025-10-13 09:41:24,547 | INFO     | chi2: 3.170702424641201
[2025-10-13 05:42:32] 2025-10-13 09:41:24,551 | INFO     | current chi2=3.170702424641201 (change=54.08744821572717 %)
[2025-10-13 05:42:32] 2025-10-13 09:41:24,552 | INFO     | sum of square deviations: 10065630534.438892
[2025-10-13 05:42:32] 2025-10-13 09:41:24,555 | INFO     | sum of deviations: 74235081921.05342
[2025-10-13 05:42:32] 2025-10-13 09:41:24,555 | INFO     | mean x: 1760338692.6018808
[2025-10-13 05:42:32] 2025-10-13 09:41:24,555 | INFO     | mean y: 2265182.244514107
[2025-10-13 05:42:32] 2025-10-13 09:41:24,555 | INFO     | -- intersect: -12980417482.988577
[2025-10-13 05:42:32] 2025-10-13 09:41:24,559 | INFO     | intersect: -12980417482.988577
[2025-10-13 05:42:32] 2025-10-13 09:41:24,560 | INFO     | chi2: 1.9505836739405191
[2025-10-13 05:42:32] 2025-10-13 09:41:24,560 | INFO     | current chi2=1.9505836739405191 (change=38.48102367533753 %)
[2025-10-13 05:42:32] 2025-10-13 09:41:24,561 | INFO     | sum of square deviations: 9599637655.09873
[2025-10-13 05:42:32] 2025-10-13 09:41:24,563 | INFO     | sum of deviations: 30694285386.12109
[2025-10-13 05:42:32] 2025-10-13 09:41:24,567 | INFO     | mean x: 1760338845.111465
[2025-10-13 05:42:32] 2025-10-13 09:41:24,568 | INFO     | mean y: 2279413.9108280255
[2025-10-13 05:42:32] 2025-10-13 09:41:24,568 | INFO     | -- intersect: -5626302083.582206
[2025-10-13 05:42:32] 2025-10-13 09:41:24,568 | INFO     | intersect: -5626302083.582206
[2025-10-13 05:42:32] 2025-10-13 09:41:24,568 | INFO     | chi2: 1.1808529273633215
[2025-10-13 05:42:32] 2025-10-13 09:41:24,569 | INFO     | current chi2=1.1808529273633215 (change=39.461559986412034 %)
[2025-10-13 05:42:32] 2025-10-13 09:41:24,569 | INFO     | sum of square deviations: 9148268976.938553
[2025-10-13 05:42:32] 2025-10-13 09:41:24,571 | INFO     | sum of deviations: 4430518850.462795
[2025-10-13 05:42:32] 2025-10-13 09:41:24,572 | INFO     | mean x: 1760338997.618123
[2025-10-13 05:42:32] 2025-10-13 09:41:24,572 | INFO     | mean y: 2288284.453074434
[2025-10-13 05:42:32] 2025-10-13 09:41:24,572 | INFO     | -- intersect: -850246236.7566271
[2025-10-13 05:42:32] 2025-10-13 09:41:24,572 | INFO     | intersect: -850246236.7566271
[2025-10-13 05:42:32] 2025-10-13 09:41:24,576 | INFO     | chi2: 0.9075304435625262
[2025-10-13 05:42:32] 2025-10-13 09:41:24,577 | INFO     | current chi2=0.9075304435625262 (change=23.146191830263398 %)
[2025-10-13 05:42:32] 2025-10-13 09:41:24,577 | INFO     | left removable region: 40
[2025-10-13 05:42:32] 2025-10-13 09:41:24,577 | INFO     | sum of square deviations: 7027885774.784446
[2025-10-13 05:42:32] 2025-10-13 09:41:24,579 | INFO     | sum of deviations: 7673060113.229689
[2025-10-13 05:42:32] 2025-10-13 09:41:24,579 | INFO     | mean x: 1760339424.6183746
[2025-10-13 05:42:32] 2025-10-13 09:41:24,579 | INFO     | mean y: 2299296.4558303887
[2025-10-13 05:42:32] 2025-10-13 09:41:24,579 | INFO     | -- intersect: -1919642900.3351007
[2025-10-13 05:42:32] 2025-10-13 09:41:24,580 | INFO     | intersect: -1919642900.3351007
[2025-10-13 05:42:32] 2025-10-13 09:41:24,580 | INFO     | chi2: 0.10195247870205337
[2025-10-13 05:42:32] 2025-10-13 09:41:24,580 | INFO     | -- intersect: -1919642900.3351007
[2025-10-13 05:42:32] 2025-10-13 09:41:24,585 | INFO     | current memory leak: 1.09 B/s (using 283 data points, chi2=0.10)
[2025-10-13 05:42:32] 2025-10-13 09:41:24,585 | INFO     | could have reported an average CPU frequency of 2571 MHz (14 samples)
[2025-10-13 05:42:32] 2025-10-13 09:41:24,586 | INFO     | ..............................
[2025-10-13 05:42:32] 2025-10-13 09:41:24,586 | INFO     | . Timing measurements:
[2025-10-13 05:42:32] 2025-10-13 09:41:24,586 | INFO     | . get job = 0 s
[2025-10-13 05:42:32] 2025-10-13 09:41:24,586 | INFO     | . initial setup = 8 s
[2025-10-13 05:42:32] 2025-10-13 09:41:24,586 | INFO     | . payload setup = 51 s
[2025-10-13 05:42:32] 2025-10-13 09:41:24,586 | INFO     | . stage-in = 0 s
[2025-10-13 05:42:32] 2025-10-13 09:41:24,586 | INFO     | . payload execution = 20088 s
[2025-10-13 05:42:32] 2025-10-13 09:41:24,586 | INFO     | . stage-out = 5 s
[2025-10-13 05:42:32] 2025-10-13 09:41:24,586 | INFO     | . log creation = 0 s
[2025-10-13 05:42:32] 2025-10-13 09:41:24,586 | INFO     | ..............................
[2025-10-13 05:42:32] 2025-10-13 09:41:24,795 | INFO     | 
[2025-10-13 05:42:32] 2025-10-13 09:41:24,801 | INFO     | job summary report
[2025-10-13 05:42:32] 2025-10-13 09:41:24,802 | INFO     | --------------------------------------------------
[2025-10-13 05:42:32] 2025-10-13 09:41:24,802 | INFO     | PanDA job id: 6840961503
[2025-10-13 05:42:32] 2025-10-13 09:41:24,802 | INFO     | task id: 46676269
[2025-10-13 05:42:32] 2025-10-13 09:41:24,802 | INFO     | errors: (none)
[2025-10-13 05:42:32] 2025-10-13 09:41:24,802 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:42:32] 2025-10-13 09:41:24,802 | INFO     | pilot state: finished 
[2025-10-13 05:42:32] 2025-10-13 09:41:24,802 | INFO     | transexitcode: 0
[2025-10-13 05:42:32] 2025-10-13 09:41:24,802 | INFO     | exeerrorcode: 0
[2025-10-13 05:42:32] 2025-10-13 09:41:24,802 | INFO     | exeerrordiag: 
[2025-10-13 05:42:32] 2025-10-13 09:41:24,802 | INFO     | exitcode: 0
[2025-10-13 05:42:32] 2025-10-13 09:41:24,802 | INFO     | exitmsg: OK
[2025-10-13 05:42:32] 2025-10-13 09:41:24,802 | INFO     | cpuconsumptiontime: 49167 s
[2025-10-13 05:42:32] 2025-10-13 09:41:24,802 | INFO     | nevents: 400
[2025-10-13 05:42:32] 2025-10-13 09:41:24,802 | INFO     | neventsw: 0
[2025-10-13 05:42:32] 2025-10-13 09:41:24,803 | INFO     | pid: 918930
[2025-10-13 05:42:32] 2025-10-13 09:41:24,803 | INFO     | pgrp: 918930
[2025-10-13 05:42:32] 2025-10-13 09:41:24,803 | INFO     | corecount: 12
[2025-10-13 05:42:32] 2025-10-13 09:41:24,803 | INFO     | event service: False
[2025-10-13 05:42:32] 2025-10-13 09:41:24,803 | INFO     | sizes: {0: 2348028, 1: 2348713, 2: 2348912, 3: 2348912, 14: 2348940, 25: 2348968, 36: 2349124, 42: 2349414, 48: 2349470, 20145: 2382561, 20151: 2391559, 20154: 239
[2025-10-13 05:42:32] 2025-10-13 09:41:24,803 | INFO     | --------------------------------------------------
[2025-10-13 05:42:32] 2025-10-13 09:41:24,803 | INFO     | 
[2025-10-13 05:42:32] 2025-10-13 09:41:24,803 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-13 05:42:32] 2025-10-13 09:41:25,005 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:42:32] 2025-10-13 09:41:25,005 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:42:32] 2025-10-13 09:41:25,005 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:42:32] 2025-10-13 09:41:25,005 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:42:32] 2025-10-13 09:41:25,005 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:42:32] 2025-10-13 09:41:25,005 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:42:32] 2025-10-13 09:41:25,005 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:42:32] 2025-10-13 09:41:25,005 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:42:32] 2025-10-13 09:41:25,006 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:42:32] 2025-10-13 09:41:25,006 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:42:32] 2025-10-13 09:41:25,006 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:42:32] 2025-10-13 09:41:25,006 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:42:32] 2025-10-13 09:41:25,006 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:42:32] 2025-10-13 09:41:25,006 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:42:32] 2025-10-13 09:41:25,006 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:42:32] 2025-10-13 09:41:25,006 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:42:32] 2025-10-13 09:41:25,006 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:42:32] 2025-10-13 09:41:25,006 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:42:32] 2025-10-13 09:41:25,006 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:42:32] 2025-10-13 09:41:25,006 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:42:32] 2025-10-13 09:41:25,007 | INFO     | job 6840961503 has completed (purged errors)
[2025-10-13 05:42:32] 2025-10-13 09:41:25,007 | INFO     | overall cleanup function is called
[2025-10-13 05:42:32] 2025-10-13 09:41:26,033 | INFO     | --- collectZombieJob: --- 10, [918930]
[2025-10-13 05:42:32] 2025-10-13 09:41:26,034 | INFO     | zombie collector waiting for pid 918930
[2025-10-13 05:42:32] 2025-10-13 09:41:26,034 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:42:32] 2025-10-13 09:41:26,034 | INFO     | collected zombie processes
[2025-10-13 05:42:32] 2025-10-13 09:41:26,034 | INFO     | will attempt to kill all subprocesses of pid=918930
[2025-10-13 05:42:32] 2025-10-13 09:41:27,926 | INFO     | process IDs to be killed: [918930] (in reverse order)
[2025-10-13 05:42:32] 2025-10-13 09:41:28,193 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:42:32] 2025-10-13 09:41:28,193 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:42:32] 2025-10-13 09:41:28,263 | INFO     | did not find any defunct processes belonging to 918930
[2025-10-13 05:42:32] 2025-10-13 09:41:28,307 | INFO     | did not find any defunct processes belonging to 918930
[2025-10-13 05:42:32] 2025-10-13 09:41:28,307 | INFO     | ready for new job
[2025-10-13 05:42:32] 2025-10-13 09:41:28,307 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:42:32] 2025-10-13 09:41:28,309 | INFO     | ***************************************
[2025-10-13 05:42:32] 2025-10-13 09:41:28,310 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:42:32] 2025-10-13 09:41:28,310 | INFO     | ***************************************
[2025-10-13 05:42:32] 2025-10-13 09:41:28,310 | INFO     | 
[2025-10-13 05:42:32] 2025-10-13 09:41:28,355 | INFO     | architecture information:
[2025-10-13 05:42:32] 2025-10-13 09:41:28,364 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:42:32] 2025-10-13 09:41:28,466 | INFO     | cat /etc/os-release:
[2025-10-13 05:42:32] NAME="CentOS Linux"
[2025-10-13 05:42:32] VERSION="7 (Core)"
[2025-10-13 05:42:32] ID="centos"
[2025-10-13 05:42:32] ID_LIKE="rhel fedora"
[2025-10-13 05:42:32] VERSION_ID="7"
[2025-10-13 05:42:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:42:32] ANSI_COLOR="0;31"
[2025-10-13 05:42:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:42:32] HOME_URL="https://www.centos.org/"
[2025-10-13 05:42:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:42:32] 
[2025-10-13 05:42:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:42:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:42:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:42:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:42:32] 
[2025-10-13 05:42:32] 2025-10-13 09:41:28,466 | INFO     | ***************************************
[2025-10-13 05:42:32] 2025-10-13 09:41:28,969 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-13 05:42:32] 2025-10-13 09:41:29,029 | INFO     | sufficient remaining disk space (93743742976 B)
[2025-10-13 05:42:32] 2025-10-13 09:41:29,034 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:42:32] 2025-10-13 09:41:29,035 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:42:32] 2025-10-13 09:41:29,035 | INFO     | update_server=False
[2025-10-13 05:42:32] 2025-10-13 09:41:29,041 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:42:32] 2025-10-13 09:41:29,082 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 05:42:32] 2025-10-13 09:41:29,083 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 05:42:32] 2025-10-13 09:41:29,083 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:42:32] 2025-10-13 09:41:29,083 | INFO     | will abort loop
[2025-10-13 05:42:32] 2025-10-13 09:41:29,417 | INFO     | all job control threads have been joined
[2025-10-13 05:42:32] 2025-10-13 09:41:29,516 | INFO     | all payload control threads have been joined
[2025-10-13 05:42:32] 2025-10-13 09:41:29,839 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:42:32] 2025-10-13 09:41:29,925 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:42:32] 2025-10-13 09:41:30,046 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:42:32] 2025-10-13 09:41:30,088 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:42:32] 2025-10-13 09:41:30,117 | INFO     | all data control threads have been joined
[2025-10-13 05:42:32] 2025-10-13 09:41:30,204 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:42:32] 2025-10-13 09:41:30,211 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:42:32] 2025-10-13 09:41:30,297 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:42:32] 2025-10-13 09:41:30,423 | INFO     | [job] control thread has finished
[2025-10-13 05:42:32] 2025-10-13 09:41:30,481 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:42:32] 2025-10-13 09:41:30,503 | INFO     | [job] validate thread has finished
[2025-10-13 05:42:32] 2025-10-13 09:41:30,524 | INFO     | [payload] control thread has finished
[2025-10-13 05:42:32] 2025-10-13 09:41:30,682 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:42:32] 2025-10-13 09:41:30,729 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:42:32] 2025-10-13 09:41:30,869 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:42:32] 2025-10-13 09:41:31,123 | INFO     | [data] control thread has finished
[2025-10-13 05:42:32] 2025-10-13 09:41:31,210 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:42:32] 2025-10-13 09:41:31,313 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:42:32] 2025-10-13 09:41:31,968 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:42:32] 2025-10-13 09:41:35,328 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:42:32] 2025-10-13 09:41:58,935 | INFO     | PID=896098 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 05:42:32] 2025-10-13 09:41:58,947 | INFO     | .. there are 48 such processes running
[2025-10-13 05:42:32] 2025-10-13 09:41:58,948 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:42:32] 2025-10-13 09:41:58,949 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:42:32] 2025-10-13 09:41:58,949 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:42:32] 2025-10-13 09:42:03,714 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:42:32] 2025-10-13 09:42:04,910 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139931264444224)>', '<ExcThread(monitor, started 139930621695744)>']
[2025-10-13 05:42:32] 2025-10-13 09:42:04,993 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:42:32] 2025-10-13 09:42:04,993 | INFO     | [monitor] control thread has ended
[2025-10-13 05:42:32] 2025-10-13 09:42:09,936 | INFO     | all workflow threads have been joined
[2025-10-13 05:42:32] 2025-10-13 09:42:09,937 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:42:32] 2025-10-13 09:42:09,937 | INFO     | traces error code: 0
[2025-10-13 05:42:32] 2025-10-13 09:42:09,937 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:42:32] 2025-10-13 09:42:11,361 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:42:32] 2025-10-13 09:42:11,378 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:42:32] 2025-10-13 09:42:11,397 [wrapper] pilotpid: 896098
[2025-10-13 05:42:32] 2025-10-13 09:42:11,425 [wrapper] Pilot exit status: 0
[2025-10-13 05:42:32] 2025-10-13 09:42:11,587 [wrapper] pandaids: 6840961503
[2025-10-13 05:42:32] 2025-10-13 09:42:12,338 [wrapper] cleanup supervisor_pilot 1987468 896099
[2025-10-13 05:42:32] 2025-10-13 09:42:12,374 [wrapper] Test setup, not cleaning
[2025-10-13 05:42:32] 2025-10-13 09:42:12,400 [wrapper] apfmon messages muted
[2025-10-13 05:42:32] 2025-10-13 09:42:12,418 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:42:32] 2025-10-13 09:42:12,457 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:42:32]  *** Error codes and diagnostics ***
[2025-10-13 05:42:32]     "exeErrorCode": 0,
[2025-10-13 05:42:32]     "exeErrorDiag": "",
[2025-10-13 05:42:32]     "pilotErrorCode": 0,
[2025-10-13 05:42:32]     "pilotErrorDiag": "",
[2025-10-13 05:42:32]  *** Listing of results directory ***
[2025-10-13 05:42:32] total 417516
[2025-10-13 05:42:32] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 18:57 pilot3.tar.gz
[2025-10-13 05:42:32] -rwx------. 1 boincer umatlas     36292 Oct 12 19:00 runpilot2-wrapper.sh
[2025-10-13 05:42:32] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 19:00 queuedata.json
[2025-10-13 05:42:32] -rw-r--r--. 1 boincer umatlas       100 Oct 13 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:42:32] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 00:01 run_atlas
[2025-10-13 05:42:32] -rw-r--r--. 1 boincer umatlas       105 Oct 13 00:01 job.xml
[2025-10-13 05:42:32] -rw-r--r--. 2 boincer umatlas 221370243 Oct 13 00:01 EVNT.46676267._004642.pool.root.1
[2025-10-13 05:42:32] -rw-r--r--. 2 boincer umatlas    569671 Oct 13 00:01 input.tar.gz
[2025-10-13 05:42:32] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:01 start_atlas.sh
[2025-10-13 05:42:32] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 00:01 shared
[2025-10-13 05:42:32] -rw-r--r--. 1 boincer umatlas         0 Oct 13 00:01 boinc_lockfile
[2025-10-13 05:42:32] -rw-r--r--. 1 boincer umatlas      2549 Oct 13 00:01 pandaJob.out
[2025-10-13 05:42:32] -rw-------. 1 boincer umatlas    974373 Oct 13 00:03 agis_schedconf.cvmfs.json
[2025-10-13 05:42:32] drwx------. 5 boincer umatlas      4096 Oct 13 00:03 pilot3
[2025-10-13 05:42:32] -rw-r--r--. 1 boincer umatlas      6861 Oct 13 05:36 init_data.xml
[2025-10-13 05:42:32] -rw-------. 1 boincer umatlas 196542070 Oct 13 05:39 HITS.46676269._091802.pool.root.1
[2025-10-13 05:42:32] -rw-r--r--. 1 boincer umatlas       531 Oct 13 05:39 boinc_task_state.xml
[2025-10-13 05:42:32] -rw-------. 1 boincer umatlas      1047 Oct 13 05:40 memory_monitor_summary.json
[2025-10-13 05:42:32] -rw-------. 1 boincer umatlas   1560580 Oct 13 05:40 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:42:32] -rw-------. 1 boincer umatlas    574317 Oct 13 05:40 log.46676269._091802.job.log.tgz.1
[2025-10-13 05:42:32] -rw-------. 1 boincer umatlas      7839 Oct 13 05:41 heartbeat.json
[2025-10-13 05:42:32] -rw-------. 1 boincer umatlas        95 Oct 13 05:41 pilot_heartbeat.json
[2025-10-13 05:42:32] -rw-------. 1 boincer umatlas      5009 Oct 13 05:42 pilotlog.txt
[2025-10-13 05:42:32] -rw-------. 1 boincer umatlas   2285854 Oct 13 05:42 log.46676269._091802.job.log.1
[2025-10-13 05:42:32] -rw-------. 1 boincer umatlas       357 Oct 13 05:42 output.list
[2025-10-13 05:42:32] -rw-r--r--. 1 boincer umatlas       620 Oct 13 05:42 runtime_log
[2025-10-13 05:42:32] -rw-------. 1 boincer umatlas   2877440 Oct 13 05:42 result.tar.gz
[2025-10-13 05:42:32] -rw-r--r--. 1 boincer umatlas      8716 Oct 13 05:42 runtime_log.err
[2025-10-13 05:42:32] -rw-------. 1 boincer umatlas       657 Oct 13 05:42 gMILDmPEKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzylNDmpcAZKn.diag
[2025-10-13 05:42:32] -rw-r--r--. 1 boincer umatlas        28 Oct 13 05:42 wrapper_checkpoint.txt
[2025-10-13 05:42:32] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 05:42 boinc_mmap_file
[2025-10-13 05:42:32] -rw-r--r--. 1 boincer umatlas     21077 Oct 13 05:42 stderr.txt
[2025-10-13 05:42:32] HITS file was successfully produced:
[2025-10-13 05:42:32] -rw-------. 1 boincer umatlas 196542070 Oct 13 05:39 shared/HITS.pool.root.1
[2025-10-13 05:42:32]  *** Contents of shared directory: ***
[2025-10-13 05:42:32] total 411516
[2025-10-13 05:42:32] -rw-r--r--. 2 boincer umatlas 221370243 Oct 13 00:01 ATLAS.root_0
[2025-10-13 05:42:32] -rw-r--r--. 2 boincer umatlas    569671 Oct 13 00:01 input.tar.gz
[2025-10-13 05:42:32] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:01 start_atlas.sh
[2025-10-13 05:42:32] -rw-------. 1 boincer umatlas 196542070 Oct 13 05:39 HITS.pool.root.1
[2025-10-13 05:42:32] -rw-------. 1 boincer umatlas   2877440 Oct 13 05:42 result.tar.gz
05:42:34 (887312): run_atlas exited; CPU time 50234.507737
05:42:34 (887312): called boinc_finish(0)

</stderr_txt>
]]>

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