Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:24 (3354066): wrapper (7.7.26015): starting
00:00:24 (3354066): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 00:00:24] Arguments: --nthreads 12
[2025-10-13 00:00:24] Threads: 12
[2025-10-13 00:00:24] Checking for CVMFS
[2025-10-13 00:00:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:00:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:00:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:00:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:00:26] 2.13.2.0 1908877 100048 341432 151647 3 717 19441993 32947201 33962 16776704 0 274142616 99.628 267111089 20651 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 00:00:26] CVMFS is ok
[2025-10-13 00:00:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:00:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:00:26] Further information can be found at the LHC@home message board.
[2025-10-13 00:00:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:00:26] Checking for apptainer binary...
[2025-10-13 00:00:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:00:26] Running /usr/bin/apptainer --version
[2025-10-13 00:00:26] apptainer version 1.4.3-1.el9
[2025-10-13 00:00:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:00:26] c6-6-8-1.aglt2.org
[2025-10-13 00:00:26] apptainer works
[2025-10-13 00:00:26] Set ATHENA_PROC_NUMBER=12
[2025-10-13 00:00:26] Set ATHENA_CORE_NUMBER=12
[2025-10-13 00:00:26] Starting ATLAS job with PandaID=6840854413
[2025-10-13 00:00:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:12:22]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:12:23] 2025-10-13 09:11:27,334 | INFO     | chi2: 5.486043116980063
[2025-10-13 05:12:23] 2025-10-13 09:11:27,335 | INFO     | sum of square deviations: 8123873268.727269
[2025-10-13 05:12:23] 2025-10-13 09:11:27,338 | INFO     | sum of deviations: 188464141290.39392
[2025-10-13 05:12:23] 2025-10-13 09:11:27,338 | INFO     | mean x: 1760337297.6969697
[2025-10-13 05:12:23] 2025-10-13 09:11:27,338 | INFO     | mean y: 2235974.1043771044
[2025-10-13 05:12:23] 2025-10-13 09:11:27,338 | INFO     | -- intersect: -40835483450.818085
[2025-10-13 05:12:23] 2025-10-13 09:11:27,338 | INFO     | intersect: -40835483450.818085
[2025-10-13 05:12:23] 2025-10-13 09:11:27,339 | INFO     | chi2: 4.690907643899882
[2025-10-13 05:12:23] 2025-10-13 09:11:27,343 | INFO     | current chi2=4.690907643899882 (change=14.49378825731659 %)
[2025-10-13 05:12:23] 2025-10-13 09:11:27,343 | INFO     | right removable region: 296
[2025-10-13 05:12:23] 2025-10-13 09:11:27,344 | INFO     | sum of square deviations: 8123764810.329955
[2025-10-13 05:12:23] 2025-10-13 09:11:27,346 | INFO     | sum of deviations: 89422720991.50839
[2025-10-13 05:12:23] 2025-10-13 09:11:27,346 | INFO     | mean x: 1760337602.7003367
[2025-10-13 05:12:23] 2025-10-13 09:11:27,346 | INFO     | mean y: 2258382.9158249157
[2025-10-13 05:12:23] 2025-10-13 09:11:27,347 | INFO     | -- intersect: -19374740086.681602
[2025-10-13 05:12:23] 2025-10-13 09:11:27,347 | INFO     | intersect: -19374740086.681602
[2025-10-13 05:12:23] 2025-10-13 09:11:27,352 | INFO     | chi2: 2.2331644715639847
[2025-10-13 05:12:23] 2025-10-13 09:11:27,352 | INFO     | current chi2=2.2331644715639847 (change=59.293712718880556 %)
[2025-10-13 05:12:23] 2025-10-13 09:11:27,352 | INFO     | sum of square deviations: 7720307270.256879
[2025-10-13 05:12:23] 2025-10-13 09:11:27,359 | INFO     | sum of deviations: 45232973903.3699
[2025-10-13 05:12:23] 2025-10-13 09:11:27,359 | INFO     | mean x: 1760337755.208904
[2025-10-13 05:12:23] 2025-10-13 09:11:27,359 | INFO     | mean y: 2275081.7808219176
[2025-10-13 05:12:23] 2025-10-13 09:11:27,360 | INFO     | -- intersect: -10311473964.095137
[2025-10-13 05:12:23] 2025-10-13 09:11:27,360 | INFO     | intersect: -10311473964.095137
[2025-10-13 05:12:23] 2025-10-13 09:11:27,360 | INFO     | chi2: 1.3505341662143282
[2025-10-13 05:12:23] 2025-10-13 09:11:27,360 | INFO     | current chi2=1.3505341662143282 (change=39.52374832165905 %)
[2025-10-13 05:12:23] 2025-10-13 09:11:27,361 | INFO     | sum of square deviations: 7330431258.139379
[2025-10-13 05:12:23] 2025-10-13 09:11:27,367 | INFO     | sum of deviations: 16003867192.57494
[2025-10-13 05:12:23] 2025-10-13 09:11:27,367 | INFO     | mean x: 1760337907.71777
[2025-10-13 05:12:23] 2025-10-13 09:11:27,368 | INFO     | mean y: 2286504.7108013937
[2025-10-13 05:12:23] 2025-10-13 09:11:27,368 | INFO     | -- intersect: -3840899946.0030336
[2025-10-13 05:12:23] 2025-10-13 09:11:27,368 | INFO     | intersect: -3840899946.0030336
[2025-10-13 05:12:23] 2025-10-13 09:11:27,368 | INFO     | chi2: 0.951007885663866
[2025-10-13 05:12:23] 2025-10-13 09:11:27,368 | INFO     | current chi2=0.951007885663866 (change=29.582834003405573 %)
[2025-10-13 05:12:23] 2025-10-13 09:11:27,369 | INFO     | sum of square deviations: 6953921840.92556
[2025-10-13 05:12:23] 2025-10-13 09:11:27,376 | INFO     | sum of deviations: 8609870886.010635
[2025-10-13 05:12:23] 2025-10-13 09:11:27,377 | INFO     | mean x: 1760338060.2234042
[2025-10-13 05:12:23] 2025-10-13 09:11:27,377 | INFO     | mean y: 2289486.9680851065
[2025-10-13 05:12:23] 2025-10-13 09:11:27,377 | INFO     | -- intersect: -2177240821.390491
[2025-10-13 05:12:23] 2025-10-13 09:11:27,377 | INFO     | intersect: -2177240821.390491
[2025-10-13 05:12:23] 2025-10-13 09:11:27,377 | INFO     | chi2: 0.9256979033351783
[2025-10-13 05:12:23] 2025-10-13 09:11:27,377 | INFO     | current chi2=0.9256979033351783 (change=2.661385116803696 %)
[2025-10-13 05:12:23] 2025-10-13 09:11:27,378 | INFO     | left removable region: 40
[2025-10-13 05:12:23] 2025-10-13 09:11:27,378 | INFO     | sum of square deviations: 5202352477.464844
[2025-10-13 05:12:23] 2025-10-13 09:11:27,386 | INFO     | sum of deviations: 22016022326.83203
[2025-10-13 05:12:23] 2025-10-13 09:11:27,386 | INFO     | mean x: 1760338487.2617188
[2025-10-13 05:12:23] 2025-10-13 09:11:27,386 | INFO     | mean y: 2301420.97265625
[2025-10-13 05:12:23] 2025-10-13 09:11:27,386 | INFO     | -- intersect: -7447338257.656295
[2025-10-13 05:12:23] 2025-10-13 09:11:27,387 | INFO     | intersect: -7447338257.656295
[2025-10-13 05:12:23] 2025-10-13 09:11:27,387 | INFO     | chi2: 0.09790080859852128
[2025-10-13 05:12:23] 2025-10-13 09:11:27,387 | INFO     | -- intersect: -7447338257.656295
[2025-10-13 05:12:23] 2025-10-13 09:11:27,387 | INFO     | current memory leak: 4.23 B/s (using 256 data points, chi2=0.10)
[2025-10-13 05:12:23] 2025-10-13 09:11:27,388 | INFO     | could have reported an average CPU frequency of 2586 MHz (14 samples)
[2025-10-13 05:12:23] 2025-10-13 09:11:27,388 | INFO     | ..............................
[2025-10-13 05:12:23] 2025-10-13 09:11:27,388 | INFO     | . Timing measurements:
[2025-10-13 05:12:23] 2025-10-13 09:11:27,388 | INFO     | . get job = 0 s
[2025-10-13 05:12:23] 2025-10-13 09:11:27,388 | INFO     | . initial setup = 6 s
[2025-10-13 05:12:23] 2025-10-13 09:11:27,388 | INFO     | . payload setup = 52 s
[2025-10-13 05:12:23] 2025-10-13 09:11:27,389 | INFO     | . stage-in = 0 s
[2025-10-13 05:12:23] 2025-10-13 09:11:27,389 | INFO     | . payload execution = 18408 s
[2025-10-13 05:12:23] 2025-10-13 09:11:27,389 | INFO     | . stage-out = 5 s
[2025-10-13 05:12:23] 2025-10-13 09:11:27,389 | INFO     | . log creation = 1 s
[2025-10-13 05:12:23] 2025-10-13 09:11:27,389 | INFO     | ..............................
[2025-10-13 05:12:23] 2025-10-13 09:11:27,607 | INFO     | 
[2025-10-13 05:12:23] 2025-10-13 09:11:27,608 | INFO     | job summary report
[2025-10-13 05:12:23] 2025-10-13 09:11:27,608 | INFO     | --------------------------------------------------
[2025-10-13 05:12:23] 2025-10-13 09:11:27,608 | INFO     | PanDA job id: 6840854413
[2025-10-13 05:12:23] 2025-10-13 09:11:27,608 | INFO     | task id: 46676269
[2025-10-13 05:12:23] 2025-10-13 09:11:27,608 | INFO     | errors: (none)
[2025-10-13 05:12:23] 2025-10-13 09:11:27,608 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:12:23] 2025-10-13 09:11:27,608 | INFO     | pilot state: finished 
[2025-10-13 05:12:23] 2025-10-13 09:11:27,608 | INFO     | transexitcode: 0
[2025-10-13 05:12:23] 2025-10-13 09:11:27,608 | INFO     | exeerrorcode: 0
[2025-10-13 05:12:23] 2025-10-13 09:11:27,608 | INFO     | exeerrordiag: 
[2025-10-13 05:12:23] 2025-10-13 09:11:27,609 | INFO     | exitcode: 0
[2025-10-13 05:12:23] 2025-10-13 09:11:27,609 | INFO     | exitmsg: OK
[2025-10-13 05:12:23] 2025-10-13 09:11:27,609 | INFO     | cpuconsumptiontime: 47539 s
[2025-10-13 05:12:23] 2025-10-13 09:11:27,609 | INFO     | nevents: 400
[2025-10-13 05:12:23] 2025-10-13 09:11:27,609 | INFO     | neventsw: 0
[2025-10-13 05:12:23] 2025-10-13 09:11:27,609 | INFO     | pid: 3385447
[2025-10-13 05:12:23] 2025-10-13 09:11:27,609 | INFO     | pgrp: 3385447
[2025-10-13 05:12:23] 2025-10-13 09:11:27,609 | INFO     | corecount: 12
[2025-10-13 05:12:23] 2025-10-13 09:11:27,609 | INFO     | event service: False
[2025-10-13 05:12:23] 2025-10-13 09:11:27,609 | INFO     | sizes: {0: 2348630, 1: 2348885, 2: 2348885, 13: 2348913, 24: 2348969, 35: 2348997, 37: 2349415, 46: 2349443, 18464: 2381630, 18465: 2381629, 18470: 2390683, 18473:
[2025-10-13 05:12:23] 2025-10-13 09:11:27,609 | INFO     | --------------------------------------------------
[2025-10-13 05:12:23] 2025-10-13 09:11:27,609 | INFO     | 
[2025-10-13 05:12:23] 2025-10-13 09:11:27,610 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-13 05:12:23] 2025-10-13 09:11:27,725 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:12:23] 2025-10-13 09:11:27,725 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:12:23] 2025-10-13 09:11:27,726 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:12:23] 2025-10-13 09:11:27,726 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:12:23] 2025-10-13 09:11:27,726 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:12:23] 2025-10-13 09:11:27,726 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:12:23] 2025-10-13 09:11:27,726 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:12:23] 2025-10-13 09:11:27,726 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:12:23] 2025-10-13 09:11:27,726 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:12:23] 2025-10-13 09:11:27,726 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:12:23] 2025-10-13 09:11:27,726 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:12:23] 2025-10-13 09:11:27,726 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:12:23] 2025-10-13 09:11:27,726 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:12:23] 2025-10-13 09:11:27,726 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:12:23] 2025-10-13 09:11:27,726 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:12:23] 2025-10-13 09:11:27,727 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:12:23] 2025-10-13 09:11:27,727 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:12:23] 2025-10-13 09:11:27,727 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:12:23] 2025-10-13 09:11:27,727 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:12:23] 2025-10-13 09:11:27,727 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:12:23] 2025-10-13 09:11:27,727 | INFO     | job 6840854413 has completed (purged errors)
[2025-10-13 05:12:23] 2025-10-13 09:11:27,727 | INFO     | overall cleanup function is called
[2025-10-13 05:12:23] 2025-10-13 09:11:28,740 | INFO     | --- collectZombieJob: --- 10, [3385447]
[2025-10-13 05:12:23] 2025-10-13 09:11:28,740 | INFO     | zombie collector waiting for pid 3385447
[2025-10-13 05:12:23] 2025-10-13 09:11:28,740 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:12:23] 2025-10-13 09:11:28,740 | INFO     | collected zombie processes
[2025-10-13 05:12:23] 2025-10-13 09:11:28,740 | INFO     | will attempt to kill all subprocesses of pid=3385447
[2025-10-13 05:12:23] 2025-10-13 09:11:30,258 | INFO     | process IDs to be killed: [3385447] (in reverse order)
[2025-10-13 05:12:23] 2025-10-13 09:11:30,966 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:12:23] 2025-10-13 09:11:30,967 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:12:23] 2025-10-13 09:11:31,008 | INFO     | did not find any defunct processes belonging to 3385447
[2025-10-13 05:12:23] 2025-10-13 09:11:31,028 | INFO     | did not find any defunct processes belonging to 3385447
[2025-10-13 05:12:23] 2025-10-13 09:11:31,028 | INFO     | ready for new job
[2025-10-13 05:12:23] 2025-10-13 09:11:31,028 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:12:23] 2025-10-13 09:11:31,031 | INFO     | ***************************************
[2025-10-13 05:12:23] 2025-10-13 09:11:31,031 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:12:23] 2025-10-13 09:11:31,031 | INFO     | ***************************************
[2025-10-13 05:12:23] 2025-10-13 09:11:31,031 | INFO     | 
[2025-10-13 05:12:23] 2025-10-13 09:11:31,037 | INFO     | architecture information:
[2025-10-13 05:12:23] 2025-10-13 09:11:31,039 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:12:23] 2025-10-13 09:11:31,064 | INFO     | cat /etc/os-release:
[2025-10-13 05:12:23] NAME="CentOS Linux"
[2025-10-13 05:12:23] VERSION="7 (Core)"
[2025-10-13 05:12:23] ID="centos"
[2025-10-13 05:12:23] ID_LIKE="rhel fedora"
[2025-10-13 05:12:23] VERSION_ID="7"
[2025-10-13 05:12:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:12:23] ANSI_COLOR="0;31"
[2025-10-13 05:12:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:12:23] HOME_URL="https://www.centos.org/"
[2025-10-13 05:12:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:12:23] 
[2025-10-13 05:12:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:12:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:12:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:12:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:12:23] 
[2025-10-13 05:12:23] 2025-10-13 09:11:31,064 | INFO     | ***************************************
[2025-10-13 05:12:23] 2025-10-13 09:11:31,568 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-13 05:12:23] 2025-10-13 09:11:31,653 | INFO     | sufficient remaining disk space (74095525888 B)
[2025-10-13 05:12:23] 2025-10-13 09:11:31,656 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:12:23] 2025-10-13 09:11:31,657 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:12:23] 2025-10-13 09:11:31,657 | INFO     | update_server=False
[2025-10-13 05:12:23] 2025-10-13 09:11:31,657 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:12:23] 2025-10-13 09:11:31,661 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:12:23] 2025-10-13 09:11:31,672 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 05:12:23] 2025-10-13 09:11:31,672 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 05:12:23] 2025-10-13 09:11:31,672 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:12:23] 2025-10-13 09:11:31,672 | INFO     | will abort loop
[2025-10-13 05:12:23] 2025-10-13 09:11:32,641 | INFO     | all payload control threads have been joined
[2025-10-13 05:12:23] 2025-10-13 09:11:32,643 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:12:23] 2025-10-13 09:11:32,661 | INFO     | all data control threads have been joined
[2025-10-13 05:12:23] 2025-10-13 09:11:32,663 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:12:23] 2025-10-13 09:11:32,678 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:12:23] 2025-10-13 09:11:32,796 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:12:23] 2025-10-13 09:11:32,827 | INFO     | [job] validate thread has finished
[2025-10-13 05:12:23] 2025-10-13 09:11:32,846 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:12:23] 2025-10-13 09:11:32,867 | INFO     | all job control threads have been joined
[2025-10-13 05:12:23] 2025-10-13 09:11:33,227 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:12:23] 2025-10-13 09:11:33,328 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:12:23] 2025-10-13 09:11:33,647 | INFO     | [payload] control thread has finished
[2025-10-13 05:12:23] 2025-10-13 09:11:33,651 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:12:23] 2025-10-13 09:11:33,673 | INFO     | [data] control thread has finished
[2025-10-13 05:12:23] 2025-10-13 09:11:33,683 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:12:23] 2025-10-13 09:11:33,875 | INFO     | [job] control thread has finished
[2025-10-13 05:12:23] 2025-10-13 09:11:33,956 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:12:23] 2025-10-13 09:11:33,956 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:12:23] 2025-10-13 09:11:34,035 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:12:23] 2025-10-13 09:11:34,036 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:12:23] 2025-10-13 09:11:37,242 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:12:23] 2025-10-13 09:12:01,962 | INFO     | PID=3361719 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:12:23] 2025-10-13 09:12:01,963 | INFO     | .. there are 34 such processes running
[2025-10-13 05:12:23] 2025-10-13 09:12:01,964 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:12:23] 2025-10-13 09:12:01,964 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:12:23] 2025-10-13 09:12:01,964 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:12:23] 2025-10-13 09:12:14,884 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:12:23] 2025-10-13 09:12:15,508 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139899389736768)>', '<ExcThread(monitor, started 139898610767616)>']
[2025-10-13 05:12:23] 2025-10-13 09:12:16,086 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:12:23] 2025-10-13 09:12:16,086 | INFO     | [monitor] control thread has ended
[2025-10-13 05:12:23] 2025-10-13 09:12:20,534 | INFO     | all workflow threads have been joined
[2025-10-13 05:12:23] 2025-10-13 09:12:20,534 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:12:23] 2025-10-13 09:12:20,534 | INFO     | traces error code: 0
[2025-10-13 05:12:23] 2025-10-13 09:12:20,535 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:12:23] 2025-10-13 09:12:21,971 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:12:23] 2025-10-13 09:12:21,985 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:12:23] 2025-10-13 09:12:21,989 [wrapper] pilotpid: 3361719
[2025-10-13 05:12:23] 2025-10-13 09:12:22,012 [wrapper] Pilot exit status: 0
[2025-10-13 05:12:23] 2025-10-13 09:12:22,113 [wrapper] pandaids: 6840854413
[2025-10-13 05:12:23] 2025-10-13 09:12:22,264 [wrapper] cleanup supervisor_pilot  111093 3361720
[2025-10-13 05:12:23] 2025-10-13 09:12:22,294 [wrapper] Test setup, not cleaning
[2025-10-13 05:12:23] 2025-10-13 09:12:22,309 [wrapper] apfmon messages muted
[2025-10-13 05:12:23] 2025-10-13 09:12:22,332 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:12:23] 2025-10-13 09:12:22,341 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:12:23]  *** Error codes and diagnostics ***
[2025-10-13 05:12:23]     "exeErrorCode": 0,
[2025-10-13 05:12:23]     "exeErrorDiag": "",
[2025-10-13 05:12:23]     "pilotErrorCode": 0,
[2025-10-13 05:12:23]     "pilotErrorDiag": "",
[2025-10-13 05:12:23]  *** Listing of results directory ***
[2025-10-13 05:12:23] total 424148
[2025-10-13 05:12:23] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 18:49 pilot3.tar.gz
[2025-10-13 05:12:23] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 18:55 queuedata.json
[2025-10-13 05:12:23] -rwx------ 1 boincer umatlas     36292 Oct 12 18:57 runpilot2-wrapper.sh
[2025-10-13 05:12:23] -rw-r--r-- 1 boincer umatlas       100 Oct 13 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:12:23] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 00:00 run_atlas
[2025-10-13 05:12:23] -rw-r--r-- 1 boincer umatlas       105 Oct 13 00:00 job.xml
[2025-10-13 05:12:23] -rw-r--r-- 2 boincer umatlas 224118860 Oct 13 00:00 EVNT.46676267._004637.pool.root.1
[2025-10-13 05:12:23] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 00:00 start_atlas.sh
[2025-10-13 05:12:23] drwxrwx--x 2 boincer umatlas      4096 Oct 13 00:00 shared
[2025-10-13 05:12:23] -rw-r--r-- 2 boincer umatlas    569682 Oct 13 00:00 input.tar.gz
[2025-10-13 05:12:23] -rw-r--r-- 1 boincer umatlas         0 Oct 13 00:00 boinc_lockfile
[2025-10-13 05:12:23] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 00:00 pandaJob.out
[2025-10-13 05:12:23] -rw------- 1 boincer umatlas    974373 Oct 13 00:01 agis_schedconf.cvmfs.json
[2025-10-13 05:12:23] drwx------ 5 boincer umatlas      4096 Oct 13 00:01 pilot3
[2025-10-13 05:12:23] -rw-r--r-- 1 boincer umatlas      6858 Oct 13 05:09 init_data.xml
[2025-10-13 05:12:23] -rw------- 1 boincer umatlas 200856666 Oct 13 05:09 HITS.46676269._091649.pool.root.1
[2025-10-13 05:12:23] -rw-r--r-- 1 boincer umatlas       531 Oct 13 05:09 boinc_task_state.xml
[2025-10-13 05:12:23] -rw------- 1 boincer umatlas      1044 Oct 13 05:10 memory_monitor_summary.json
[2025-10-13 05:12:23] -rw------- 1 boincer umatlas   1560580 Oct 13 05:10 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:12:23] -rw------- 1 boincer umatlas    566596 Oct 13 05:10 log.46676269._091649.job.log.tgz.1
[2025-10-13 05:12:23] -rw------- 1 boincer umatlas      7833 Oct 13 05:11 heartbeat.json
[2025-10-13 05:12:23] -rw------- 1 boincer umatlas        95 Oct 13 05:12 pilot_heartbeat.json
[2025-10-13 05:12:23] -rw------- 1 boincer umatlas      5010 Oct 13 05:12 pilotlog.txt
[2025-10-13 05:12:23] -rw-r--r-- 1 boincer umatlas        28 Oct 13 05:12 wrapper_checkpoint.txt
[2025-10-13 05:12:23] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 05:12 boinc_mmap_file
[2025-10-13 05:12:23] -rw------- 1 boincer umatlas   2159105 Oct 13 05:12 log.46676269._091649.job.log.1
[2025-10-13 05:12:23] -rw------- 1 boincer umatlas       357 Oct 13 05:12 output.list
[2025-10-13 05:12:23] -rw-r--r-- 1 boincer umatlas       620 Oct 13 05:12 runtime_log
[2025-10-13 05:12:23] -rw------- 1 boincer umatlas   2744320 Oct 13 05:12 result.tar.gz
[2025-10-13 05:12:23] -rw-r--r-- 1 boincer umatlas      8706 Oct 13 05:12 runtime_log.err
[2025-10-13 05:12:23] -rw------- 1 boincer umatlas       655 Oct 13 05:12 CTnKDmhBKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzxlNDmzzzOCn.diag
[2025-10-13 05:12:23] -rw-r--r-- 1 boincer umatlas     21084 Oct 13 05:12 stderr.txt
[2025-10-13 05:12:23] HITS file was successfully produced:
[2025-10-13 05:12:23] -rw------- 1 boincer umatlas 200856666 Oct 13 05:09 shared/HITS.pool.root.1
[2025-10-13 05:12:23]  *** Contents of shared directory: ***
[2025-10-13 05:12:23] total 418280
[2025-10-13 05:12:23] -rw-r--r-- 2 boincer umatlas 224118860 Oct 13 00:00 ATLAS.root_0
[2025-10-13 05:12:23] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 00:00 start_atlas.sh
[2025-10-13 05:12:23] -rw-r--r-- 2 boincer umatlas    569682 Oct 13 00:00 input.tar.gz
[2025-10-13 05:12:23] -rw------- 1 boincer umatlas 200856666 Oct 13 05:09 HITS.pool.root.1
[2025-10-13 05:12:23] -rw------- 1 boincer umatlas   2744320 Oct 13 05:12 result.tar.gz
05:12:24 (3354066): run_atlas exited; CPU time 48453.040895
05:12:24 (3354066): called boinc_finish(0)

</stderr_txt>
]]>

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