Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:53:07 (22265): wrapper (7.7.26015): starting
23:53:07 (22265): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 23:53:07] Arguments: --nthreads 12
[2025-10-12 23:53:07] Threads: 12
[2025-10-12 23:53:07] Checking for CVMFS
[2025-10-12 23:53:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 23:53:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 23:53:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 23:53:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 23:53:07] 2.11.2.0 2945 223807 98704 151647 3 57 16384495 20275201 1 130560 2 110695290 99.984 13449362 12795 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 23:53:07] CVMFS is ok
[2025-10-12 23:53:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 23:53:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 23:53:07] Further information can be found at the LHC@home message board.
[2025-10-12 23:53:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 23:53:07] Checking for apptainer binary...
[2025-10-12 23:53:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 23:53:07] Running /usr/bin/apptainer --version
[2025-10-12 23:53:07] apptainer version 1.3.2-1.el7
[2025-10-12 23:53:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 23:53:09] c-205-2.aglt2.org
[2025-10-12 23:53:09] apptainer works
[2025-10-12 23:53:09] Set ATHENA_PROC_NUMBER=12
[2025-10-12 23:53:09] Set ATHENA_CORE_NUMBER=12
[2025-10-12 23:53:09] Starting ATLAS job with PandaID=6840853985
[2025-10-12 23:53:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:08:38]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:08:38] 2025-10-13 05:07:23,050 | INFO     |  -- lfn=log.46676269._091555.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 01:08:38] 2025-10-13 05:07:23,050 | INFO     | stage-out finished correctly
[2025-10-13 01:08:38] 2025-10-13 05:07:24,472 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 01:08:38] 2025-10-13 05:07:24,594 | INFO     | time since job start (4440s) is within the limit (172800.0s)
[2025-10-13 01:08:38] 2025-10-13 05:07:24,696 | WARNING  | process 32337 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 01:08:38] 2025-10-13 05:07:24,696 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840853985/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:08:38] 2025-10-13 05:07:24,697 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840853985/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:08:38] 2025-10-13 05:07:24,697 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-13 01:08:38] 2025-10-13 05:07:24,697 | WARNING  | maxPSS not found in memory monitor output
[2025-10-13 01:08:38] 2025-10-13 05:07:24,698 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4437411 B
[2025-10-13 01:08:38] 2025-10-13 05:07:24,698 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15305 B
[2025-10-13 01:08:38] 2025-10-13 05:07:24,698 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 01:08:38] 2025-10-13 05:07:24,717 | INFO     | sufficient remaining disk space (29421993984 B)
[2025-10-13 01:08:38] 2025-10-13 05:07:24,717 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-13 01:08:38] 2025-10-13 05:07:24,718 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6840853985: 4734989 B (within 2537553920 B limit)
[2025-10-13 01:08:38] 2025-10-13 05:07:24,718 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6840853985/HITS.46676269._091555.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-13 01:08:38] 2025-10-13 05:07:24,719 | INFO     | total size of present files: 0 B (workdir size: 4734989 B)
[2025-10-13 01:08:38] 2025-10-13 05:07:24,719 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6840853985/HITS.46676269._091555.pool.root.1 since it does not exist
[2025-10-13 01:08:38] 2025-10-13 05:07:24,809 | INFO     | number of running child processes to parent process 32337: 1
[2025-10-13 01:08:38] 2025-10-13 05:07:24,809 | INFO     | maximum number of monitored processes: 6
[2025-10-13 01:08:38] 2025-10-13 05:07:26,599 | INFO     | time since job start (4442s) is within the limit (172800.0s)
[2025-10-13 01:08:38] 2025-10-13 05:07:26,681 | INFO     | job 6840853985 has state=finished
[2025-10-13 01:08:38] 2025-10-13 05:07:26,682 | INFO     | preparing for final server update for job 6840853985 in state='finished'
[2025-10-13 01:08:38] 2025-10-13 05:07:26,682 | INFO     | this job has now completed (state=finished)
[2025-10-13 01:08:38] 2025-10-13 05:07:26,682 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 01:08:38] 2025-10-13 05:07:26,683 | INFO     | log transfer has been attempted: DONE
[2025-10-13 01:08:38] 2025-10-13 05:07:26,683 | INFO     | job 6840853985 has finished - writing final server update
[2025-10-13 01:08:38] 2025-10-13 05:07:26,683 | INFO     | total number of processed events: 400 (read)
[2025-10-13 01:08:38] 2025-10-13 05:07:26,684 | INFO     | executing command: lscpu
[2025-10-13 01:08:38] 2025-10-13 05:07:26,711 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 01:08:38] 2025-10-13 05:07:27,312 | INFO     | monitor loop #330: job 0:6840853985 is in state 'finished'
[2025-10-13 01:08:38] 2025-10-13 05:07:27,312 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:08:38] 2025-10-13 05:07:28,604 | INFO     | time since job start (4444s) is within the limit (172800.0s)
[2025-10-13 01:08:38] 2025-10-13 05:07:29,815 | INFO     | monitor loop #331: job 0:6840853985 is in state 'finished'
[2025-10-13 01:08:38] 2025-10-13 05:07:29,815 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:08:38] 2025-10-13 05:07:30,609 | INFO     | time since job start (4446s) is within the limit (172800.0s)
[2025-10-13 01:08:38] 2025-10-13 05:07:31,524 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 01:08:38] 2025-10-13 05:07:31,528 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-13 01:08:38] 2025-10-13 05:07:31,530 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840853985/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:08:38] 2025-10-13 05:07:31,531 | INFO     | extracted standard info from prmon json
[2025-10-13 01:08:38] 2025-10-13 05:07:31,531 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 01:08:38] 2025-10-13 05:07:31,531 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 01:08:38] 2025-10-13 05:07:31,531 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 01:08:38] 2025-10-13 05:07:31,531 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 01:08:38] 2025-10-13 05:07:31,533 | INFO     | fitting pss+swap vs Time
[2025-10-13 01:08:38] 2025-10-13 05:07:31,533 | INFO     | sum of square deviations: 89127252.5
[2025-10-13 01:08:38] 2025-10-13 05:07:31,533 | INFO     | sum of deviations: -4409557812.999999
[2025-10-13 01:08:38] 2025-10-13 05:07:31,533 | INFO     | mean x: 1760329920.5
[2025-10-13 01:08:38] 2025-10-13 05:07:31,534 | INFO     | mean y: 2723508.9696969697
[2025-10-13 01:08:38] 2025-10-13 05:07:31,534 | INFO     | -- intersect: 87094789478.33682
[2025-10-13 01:08:38] 2025-10-13 05:07:31,534 | INFO     | intersect: 87094789478.33682
[2025-10-13 01:08:38] 2025-10-13 05:07:31,534 | INFO     | chi2: 0.07580906616414018
[2025-10-13 01:08:38] 2025-10-13 05:07:31,534 | INFO     | -- intersect: 87094789478.33682
[2025-10-13 01:08:38] 2025-10-13 05:07:31,534 | INFO     | current memory leak: -49.47 B/s (using 66 data points, chi2=0.08)
[2025-10-13 01:08:38] 2025-10-13 05:07:31,535 | INFO     | could have reported an average CPU frequency of 2056 MHz (6 samples)
[2025-10-13 01:08:38] 2025-10-13 05:07:31,535 | INFO     | ..............................
[2025-10-13 01:08:38] 2025-10-13 05:07:31,535 | INFO     | . Timing measurements:
[2025-10-13 01:08:38] 2025-10-13 05:07:31,535 | INFO     | . get job = 0 s
[2025-10-13 01:08:38] 2025-10-13 05:07:31,535 | INFO     | . initial setup = 2 s
[2025-10-13 01:08:38] 2025-10-13 05:07:31,535 | INFO     | . payload setup = 7 s
[2025-10-13 01:08:38] 2025-10-13 05:07:31,535 | INFO     | . stage-in = 0 s
[2025-10-13 01:08:38] 2025-10-13 05:07:31,535 | INFO     | . payload execution = 4410 s
[2025-10-13 01:08:38] 2025-10-13 05:07:31,536 | INFO     | . stage-out = 0 s
[2025-10-13 01:08:38] 2025-10-13 05:07:31,536 | INFO     | . log creation = 0 s
[2025-10-13 01:08:38] 2025-10-13 05:07:31,536 | INFO     | ..............................
[2025-10-13 01:08:38] 2025-10-13 05:07:31,618 | INFO     | 
[2025-10-13 01:08:38] 2025-10-13 05:07:31,618 | INFO     | job summary report
[2025-10-13 01:08:38] 2025-10-13 05:07:31,630 | INFO     | --------------------------------------------------
[2025-10-13 01:08:38] 2025-10-13 05:07:31,630 | INFO     | PanDA job id: 6840853985
[2025-10-13 01:08:38] 2025-10-13 05:07:31,630 | INFO     | task id: 46676269
[2025-10-13 01:08:38] 2025-10-13 05:07:31,630 | INFO     | errors: (none)
[2025-10-13 01:08:38] 2025-10-13 05:07:31,630 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 01:08:38] 2025-10-13 05:07:31,631 | INFO     | pilot state: finished 
[2025-10-13 01:08:38] 2025-10-13 05:07:31,631 | INFO     | transexitcode: 0
[2025-10-13 01:08:38] 2025-10-13 05:07:31,631 | INFO     | exeerrorcode: 0
[2025-10-13 01:08:38] 2025-10-13 05:07:31,631 | INFO     | exeerrordiag: 
[2025-10-13 01:08:38] 2025-10-13 05:07:31,631 | INFO     | exitcode: 0
[2025-10-13 01:08:38] 2025-10-13 05:07:31,631 | INFO     | exitmsg: OK
[2025-10-13 01:08:38] 2025-10-13 05:07:31,631 | INFO     | cpuconsumptiontime: 47102 s
[2025-10-13 01:08:38] 2025-10-13 05:07:31,632 | INFO     | nevents: 400
[2025-10-13 01:08:38] 2025-10-13 05:07:31,632 | INFO     | neventsw: 0
[2025-10-13 01:08:38] 2025-10-13 05:07:31,632 | INFO     | pid: 32337
[2025-10-13 01:08:38] 2025-10-13 05:07:31,632 | INFO     | pgrp: 32337
[2025-10-13 01:08:38] 2025-10-13 05:07:31,632 | INFO     | corecount: 12
[2025-10-13 01:08:38] 2025-10-13 05:07:31,632 | INFO     | event service: False
[2025-10-13 01:08:38] 2025-10-13 05:07:31,632 | INFO     | sizes: {0: 2348756, 5: 2349018, 11: 2349074, 4421: 2375122, 4422: 2384120, 4424: 2384176, 4431: 2384526}
[2025-10-13 01:08:38] 2025-10-13 05:07:31,632 | INFO     | --------------------------------------------------
[2025-10-13 01:08:38] 2025-10-13 05:07:31,633 | INFO     | 
[2025-10-13 01:08:38] 2025-10-13 05:07:31,633 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 01:08:38] 2025-10-13 05:07:31,657 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:08:38] 2025-10-13 05:07:31,657 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:08:38] 2025-10-13 05:07:31,657 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:08:38] 2025-10-13 05:07:31,657 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:08:38] 2025-10-13 05:07:31,657 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:08:38] 2025-10-13 05:07:31,658 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:08:38] 2025-10-13 05:07:31,658 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:08:38] 2025-10-13 05:07:31,658 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:08:38] 2025-10-13 05:07:31,658 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:08:38] 2025-10-13 05:07:31,658 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:08:38] 2025-10-13 05:07:31,658 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:08:38] 2025-10-13 05:07:31,659 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:08:38] 2025-10-13 05:07:31,659 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:08:38] 2025-10-13 05:07:31,659 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:08:38] 2025-10-13 05:07:31,659 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:08:38] 2025-10-13 05:07:31,659 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:08:38] 2025-10-13 05:07:31,660 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:08:38] 2025-10-13 05:07:31,660 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:08:38] 2025-10-13 05:07:31,660 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:08:38] 2025-10-13 05:07:31,660 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:08:38] 2025-10-13 05:07:31,660 | INFO     | job 6840853985 has completed (purged errors)
[2025-10-13 01:08:38] 2025-10-13 05:07:31,660 | INFO     | overall cleanup function is called
[2025-10-13 01:08:38] 2025-10-13 05:07:32,668 | INFO     | --- collectZombieJob: --- 10, [32337]
[2025-10-13 01:08:38] 2025-10-13 05:07:32,668 | INFO     | zombie collector waiting for pid 32337
[2025-10-13 01:08:38] 2025-10-13 05:07:32,669 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:08:38] 2025-10-13 05:07:32,669 | INFO     | collected zombie processes
[2025-10-13 01:08:38] 2025-10-13 05:07:32,669 | INFO     | will attempt to kill all subprocesses of pid=32337
[2025-10-13 01:08:38] 2025-10-13 05:07:32,763 | INFO     | process IDs to be killed: [32337] (in reverse order)
[2025-10-13 01:08:38] 2025-10-13 05:07:32,817 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:08:38] 2025-10-13 05:07:32,817 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:08:38] 2025-10-13 05:07:32,821 | INFO     | did not find any defunct processes belonging to 32337
[2025-10-13 01:08:38] 2025-10-13 05:07:32,823 | INFO     | did not find any defunct processes belonging to 32337
[2025-10-13 01:08:38] 2025-10-13 05:07:32,823 | INFO     | ready for new job
[2025-10-13 01:08:38] 2025-10-13 05:07:32,824 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:08:38] 2025-10-13 05:07:32,825 | INFO     | ***************************************
[2025-10-13 01:08:38] 2025-10-13 05:07:32,825 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:08:38] 2025-10-13 05:07:32,825 | INFO     | ***************************************
[2025-10-13 01:08:38] 2025-10-13 05:07:32,825 | INFO     | 
[2025-10-13 01:08:38] 2025-10-13 05:07:32,826 | INFO     | architecture information:
[2025-10-13 01:08:38] 2025-10-13 05:07:32,826 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:08:38] 2025-10-13 05:07:32,842 | INFO     | cat /etc/os-release:
[2025-10-13 01:08:38] NAME="CentOS Linux"
[2025-10-13 01:08:38] VERSION="7 (Core)"
[2025-10-13 01:08:38] ID="centos"
[2025-10-13 01:08:38] ID_LIKE="rhel fedora"
[2025-10-13 01:08:38] VERSION_ID="7"
[2025-10-13 01:08:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:08:38] ANSI_COLOR="0;31"
[2025-10-13 01:08:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:08:38] HOME_URL="https://www.centos.org/"
[2025-10-13 01:08:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:08:38] 
[2025-10-13 01:08:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:08:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:08:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:08:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:08:38] 
[2025-10-13 01:08:38] 2025-10-13 05:07:32,842 | INFO     | ***************************************
[2025-10-13 01:08:38] 2025-10-13 05:07:33,345 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 01:08:38] 2025-10-13 05:07:33,363 | INFO     | sufficient remaining disk space (29427236864 B)
[2025-10-13 01:08:38] 2025-10-13 05:07:33,363 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:08:38] 2025-10-13 05:07:33,364 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:08:38] 2025-10-13 05:07:33,364 | INFO     | update_server=False
[2025-10-13 01:08:38] 2025-10-13 05:07:33,364 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:08:38] 2025-10-13 05:07:33,364 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:08:38] 2025-10-13 05:07:33,365 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:08:38] 2025-10-13 05:07:33,365 | INFO     | aborting loop
[2025-10-13 01:08:38] 2025-10-13 05:07:33,644 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:08:38] 2025-10-13 05:07:33,925 | INFO     | all data control threads have been joined
[2025-10-13 01:08:38] 2025-10-13 05:07:34,047 | INFO     | all job control threads have been joined
[2025-10-13 01:08:38] 2025-10-13 05:07:34,322 | INFO     | all payload control threads have been joined
[2025-10-13 01:08:38] 2025-10-13 05:07:34,370 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:08:38] 2025-10-13 05:07:34,370 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:08:38] 2025-10-13 05:07:34,370 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:08:38] 2025-10-13 05:07:34,410 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:08:38] 2025-10-13 05:07:34,444 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:08:38] 2025-10-13 05:07:34,876 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:08:38] 2025-10-13 05:07:34,930 | INFO     | [data] control thread has finished
[2025-10-13 01:08:38] 2025-10-13 05:07:35,052 | INFO     | [job] control thread has finished
[2025-10-13 01:08:38] 2025-10-13 05:07:35,066 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:08:38] 2025-10-13 05:07:35,180 | INFO     | [job] validate thread has finished
[2025-10-13 01:08:38] 2025-10-13 05:07:35,181 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:08:38] 2025-10-13 05:07:35,319 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:08:38] 2025-10-13 05:07:35,327 | INFO     | [payload] control thread has finished
[2025-10-13 01:08:38] 2025-10-13 05:07:35,349 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:08:38] 2025-10-13 05:07:35,649 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:08:38] 2025-10-13 05:07:35,711 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:08:38] 2025-10-13 05:07:39,072 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:08:38] 2025-10-13 05:08:03,820 | INFO     | PID=25962 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 01:08:38] 2025-10-13 05:08:03,820 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:08:38] 2025-10-13 05:08:03,821 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:08:38] 2025-10-13 05:08:03,821 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:08:38] 2025-10-13 05:08:21,773 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-10-13 01:08:38] 2025-10-13 05:08:30,884 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:08:38] 2025-10-13 05:08:32,930 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139756771100480)>', '<ExcThread(monitor, started 139756197365504)>']
[2025-10-13 01:08:38] 2025-10-13 05:08:32,936 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:08:38] 2025-10-13 05:08:32,936 | INFO     | [monitor] control thread has ended
[2025-10-13 01:08:38] 2025-10-13 05:08:37,940 | INFO     | all workflow threads have been joined
[2025-10-13 01:08:38] 2025-10-13 05:08:37,940 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:08:38] 2025-10-13 05:08:37,940 | INFO     | traces error code: 0
[2025-10-13 01:08:38] 2025-10-13 05:08:37,940 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:08:38] 2025-10-13 05:08:38,027 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:08:38] 2025-10-13 05:08:38,031 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:08:38] 2025-10-13 05:08:38,035 [wrapper] pilotpid: 25962
[2025-10-13 01:08:38] 2025-10-13 05:08:38,039 [wrapper] Pilot exit status: 0
[2025-10-13 01:08:38] 2025-10-13 05:08:38,056 [wrapper] pandaids: 6840853985
[2025-10-13 01:08:38] 2025-10-13 05:08:38,102 [wrapper] cleanup supervisor_pilot 21023 25963
[2025-10-13 01:08:38] 2025-10-13 05:08:38,106 [wrapper] Test setup, not cleaning
[2025-10-13 01:08:38] 2025-10-13 05:08:38,110 [wrapper] apfmon messages muted
[2025-10-13 01:08:38] 2025-10-13 05:08:38,114 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:08:38] 2025-10-13 05:08:38,117 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:08:38]  *** Error codes and diagnostics ***
[2025-10-13 01:08:38]     "exeErrorCode": 0,
[2025-10-13 01:08:38]     "exeErrorDiag": "",
[2025-10-13 01:08:38]     "pilotErrorCode": 0,
[2025-10-13 01:08:38]     "pilotErrorDiag": "",
[2025-10-13 01:08:38]  *** Listing of results directory ***
[2025-10-13 01:08:38] total 416276
[2025-10-13 01:08:38] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 18:49 queuedata.json
[2025-10-13 01:08:38] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 18:49 pilot3.tar.gz
[2025-10-13 01:08:38] -rwx------ 1 boincer umatlas     36292 Oct 12 18:50 runpilot2-wrapper.sh
[2025-10-13 01:08:38] -rw-r--r-- 1 boincer umatlas       100 Oct 12 23:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:08:38] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 23:53 run_atlas
[2025-10-13 01:08:38] -rw-r--r-- 1 boincer umatlas       105 Oct 12 23:53 job.xml
[2025-10-13 01:08:38] -rw-r--r-- 2 boincer umatlas 222414344 Oct 12 23:53 EVNT.46676267._002138.pool.root.1
[2025-10-13 01:08:38] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 23:53 start_atlas.sh
[2025-10-13 01:08:38] drwxrwx--x 2 boincer umatlas      4096 Oct 12 23:53 shared
[2025-10-13 01:08:38] -rw-r--r-- 2 boincer umatlas    569686 Oct 12 23:53 input.tar.gz
[2025-10-13 01:08:38] -rw-r--r-- 1 boincer umatlas         0 Oct 12 23:53 boinc_lockfile
[2025-10-13 01:08:38] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 23:53 pandaJob.out
[2025-10-13 01:08:38] -rw------- 1 boincer umatlas    974373 Oct 12 23:53 agis_schedconf.cvmfs.json
[2025-10-13 01:08:38] -rw------- 1 boincer umatlas   1560580 Oct 12 23:53 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:08:38] drwx------ 5 boincer umatlas      4096 Oct 12 23:53 pilot3
[2025-10-13 01:08:38] -rw-r--r-- 1 boincer umatlas      5951 Oct 13 01:03 init_data.xml
[2025-10-13 01:08:38] -rw------- 1 boincer umatlas 197883222 Oct 13 01:06 HITS.46676269._091555.pool.root.1
[2025-10-13 01:08:38] -rw-r--r-- 1 boincer umatlas       529 Oct 13 01:06 boinc_task_state.xml
[2025-10-13 01:08:38] -rw------- 1 boincer umatlas      1050 Oct 13 01:07 memory_monitor_summary.json
[2025-10-13 01:08:38] -rw------- 1 boincer umatlas        95 Oct 13 01:07 pilot_heartbeat.json
[2025-10-13 01:08:38] -rw------- 1 boincer umatlas    388522 Oct 13 01:07 log.46676269._091555.job.log.tgz.1
[2025-10-13 01:08:38] -rw------- 1 boincer umatlas      7855 Oct 13 01:07 heartbeat.json
[2025-10-13 01:08:38] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 01:08 boinc_mmap_file
[2025-10-13 01:08:38] -rw-r--r-- 1 boincer umatlas        27 Oct 13 01:08 wrapper_checkpoint.txt
[2025-10-13 01:08:38] -rw------- 1 boincer umatlas      4746 Oct 13 01:08 pilotlog.txt
[2025-10-13 01:08:38] -rw------- 1 boincer umatlas    646053 Oct 13 01:08 log.46676269._091555.job.log.1
[2025-10-13 01:08:38] -rw------- 1 boincer umatlas       357 Oct 13 01:08 output.list
[2025-10-13 01:08:38] -rw-r--r-- 1 boincer umatlas       620 Oct 13 01:08 runtime_log
[2025-10-13 01:08:38] -rw------- 1 boincer umatlas   1054720 Oct 13 01:08 result.tar.gz
[2025-10-13 01:08:38] -rw-r--r-- 1 boincer umatlas      8700 Oct 13 01:08 runtime_log.err
[2025-10-13 01:08:38] -rw------- 1 boincer umatlas       658 Oct 13 01:08 rRcKDmU4JS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDwlNDmOUo3fm.diag
[2025-10-13 01:08:38] -rw-r--r-- 1 boincer umatlas     22393 Oct 13 01:08 stderr.txt
[2025-10-13 01:08:38] HITS file was successfully produced:
[2025-10-13 01:08:38] -rw------- 1 boincer umatlas 197883222 Oct 13 01:06 shared/HITS.pool.root.1
[2025-10-13 01:08:38]  *** Contents of shared directory: ***
[2025-10-13 01:08:38] total 412064
[2025-10-13 01:08:38] -rw-r--r-- 2 boincer umatlas 222414344 Oct 12 23:53 ATLAS.root_0
[2025-10-13 01:08:38] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 23:53 start_atlas.sh
[2025-10-13 01:08:38] -rw-r--r-- 2 boincer umatlas    569686 Oct 12 23:53 input.tar.gz
[2025-10-13 01:08:38] -rw------- 1 boincer umatlas 197883222 Oct 13 01:06 HITS.pool.root.1
[2025-10-13 01:08:38] -rw------- 1 boincer umatlas   1054720 Oct 13 01:08 result.tar.gz
01:08:39 (22265): run_atlas exited; CPU time 47075.603560
01:08:39 (22265): called boinc_finish(0)

</stderr_txt>
]]>

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