Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:41:24 (36902): wrapper (7.7.26015): starting
09:41:24 (36902): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 09:41:24] Arguments: --nthreads 12
[2025-10-13 09:41:24] Threads: 12
[2025-10-13 09:41:24] Checking for CVMFS
[2025-10-13 09:41:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 09:41:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 09:41:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 09:41:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 09:41:24] 2.13.2.0 8715 30201 232084 151653 2 188 40562648 46080001 6410 130560 0 205590704 99.893 56072636 21598 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-13 09:41:24] CVMFS is ok
[2025-10-13 09:41:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 09:41:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 09:41:24] Further information can be found at the LHC@home message board.
[2025-10-13 09:41:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 09:41:24] Checking for apptainer binary...
[2025-10-13 09:41:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 09:41:24] Running /usr/bin/apptainer --version
[2025-10-13 09:41:24] apptainer version 1.4.2-1.el9
[2025-10-13 09:41:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 09:41:24] mff2104.farm.particle.cz
[2025-10-13 09:41:24] apptainer works
[2025-10-13 09:41:24] Set ATHENA_PROC_NUMBER=12
[2025-10-13 09:41:24] Set ATHENA_CORE_NUMBER=12
[2025-10-13 09:41:24] Starting ATLAS job with PandaID=6840962048
[2025-10-13 09:41:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 10:38:01]  *** The last 200 lines of the pilot log: ***
[2025-10-13 10:38:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/eb/c7/log.46676269._092035.job.log.tgz.1
[2025-10-13 10:38:01]  workdir=None
[2025-10-13 10:38:01] ]
[2025-10-13 10:38:01] 2025-10-13 08:37:19,639 | INFO     | transferring file log.46676269._092035.job.log.tgz.1 from /scratch/.boinc/slots/0/PanDA_Pilot-6840962048/log.46676269._092035.job.log.tgz.1 to /scratch/.boinc/slot
[2025-10-13 10:38:01] 2025-10-13 08:37:19,639 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/0/PanDA_Pilot-6840962048/log.46676269._092035.job.log.tgz.1 /scratch/.boinc/slots/0/log.46676269._092035.j
[2025-10-13 10:38:01] 2025-10-13 08:37:19,667 | INFO     | adding to output.list: log.46676269._092035.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/eb/c7/log.46676269._092035.job.log.tg
[2025-10-13 10:38:01] 2025-10-13 08:37:19,668 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 10:38:01] 2025-10-13 08:37:19,668 | INFO     | summary of transferred files:
[2025-10-13 10:38:01] 2025-10-13 08:37:19,668 | INFO     |  -- lfn=log.46676269._092035.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 10:38:01] 2025-10-13 08:37:19,668 | INFO     | stage-out finished correctly
[2025-10-13 10:38:01] 2025-10-13 08:37:20,168 | WARNING  | process 49118 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 10:38:01] 2025-10-13 08:37:20,168 | INFO     | using path: /scratch/.boinc/slots/0/PanDA_Pilot-6840962048/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 10:38:01] 2025-10-13 08:37:20,508 | INFO     | number of running child processes to parent process 49118: 1
[2025-10-13 10:38:01] 2025-10-13 08:37:20,508 | INFO     | maximum number of monitored processes: 6
[2025-10-13 10:38:01] 2025-10-13 08:37:20,565 | INFO     | time since job start (3343s) is within the limit (172800.0s)
[2025-10-13 10:38:01] 2025-10-13 08:37:21,935 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 10:38:01] 2025-10-13 08:37:22,027 | INFO     | job 6840962048 has state=finished
[2025-10-13 10:38:01] 2025-10-13 08:37:22,028 | INFO     | preparing for final server update for job 6840962048 in state='finished'
[2025-10-13 10:38:01] 2025-10-13 08:37:22,029 | INFO     | this job has now completed (state=finished)
[2025-10-13 10:38:01] 2025-10-13 08:37:22,029 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 10:38:01] 2025-10-13 08:37:22,029 | INFO     | log transfer has been attempted: DONE
[2025-10-13 10:38:01] 2025-10-13 08:37:22,029 | INFO     | job 6840962048 has finished - writing final server update
[2025-10-13 10:38:01] 2025-10-13 08:37:22,029 | INFO     | total number of processed events: 400 (read)
[2025-10-13 10:38:01] 2025-10-13 08:37:22,030 | INFO     | executing command: lscpu
[2025-10-13 10:38:01] 2025-10-13 08:37:22,095 | INFO     | PID=40983 has CPU usage=12.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 10:38:01] 2025-10-13 08:37:22,095 | INFO     | .. there are 8 such processes running
[2025-10-13 10:38:01] 2025-10-13 08:37:22,115 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 10:38:01] 2025-10-13 08:37:23,010 | INFO     | monitor loop #242: job 0:6840962048 is in state 'finished'
[2025-10-13 10:38:01] 2025-10-13 08:37:23,011 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 10:38:01] 2025-10-13 08:37:23,096 | INFO     | time since job start (3346s) is within the limit (172800.0s)
[2025-10-13 10:38:01] 2025-10-13 08:37:25,101 | INFO     | time since job start (3348s) is within the limit (172800.0s)
[2025-10-13 10:38:01] 2025-10-13 08:37:25,513 | INFO     | monitor loop #243: job 0:6840962048 is in state 'finished'
[2025-10-13 10:38:01] 2025-10-13 08:37:25,513 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 10:38:01] 2025-10-13 08:37:27,107 | INFO     | time since job start (3350s) is within the limit (172800.0s)
[2025-10-13 10:38:01] 2025-10-13 08:37:27,761 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 10:38:01] 2025-10-13 08:37:27,777 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2772.0003020833337
[2025-10-13 10:38:01] 2025-10-13 08:37:27,794 | INFO     | using path: /scratch/.boinc/slots/0/PanDA_Pilot-6840962048/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 10:38:01] 2025-10-13 08:37:27,795 | INFO     | extracted standard info from prmon json
[2025-10-13 10:38:01] 2025-10-13 08:37:27,795 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 10:38:01] 2025-10-13 08:37:27,795 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 10:38:01] 2025-10-13 08:37:27,796 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 10:38:01] 2025-10-13 08:37:27,796 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 10:38:01] 2025-10-13 08:37:27,797 | INFO     | fitting pss+swap vs Time
[2025-10-13 10:38:01] 2025-10-13 08:37:27,797 | INFO     | sum of square deviations: 34277852.0
[2025-10-13 10:38:01] 2025-10-13 08:37:27,797 | INFO     | sum of deviations: -555107747.0
[2025-10-13 10:38:01] 2025-10-13 08:37:27,798 | INFO     | mean x: 1760343066.5
[2025-10-13 10:38:01] 2025-10-13 08:37:27,798 | INFO     | mean y: 2711027.0
[2025-10-13 10:38:01] 2025-10-13 08:37:27,798 | INFO     | -- intersect: 28510333779.787605
[2025-10-13 10:38:01] 2025-10-13 08:37:27,798 | INFO     | intersect: 28510333779.787605
[2025-10-13 10:38:01] 2025-10-13 08:37:27,798 | INFO     | chi2: 0.0022200250061095244
[2025-10-13 10:38:01] 2025-10-13 08:37:27,798 | INFO     | -- intersect: 28510333779.787605
[2025-10-13 10:38:01] 2025-10-13 08:37:27,798 | INFO     | current memory leak: -16.19 B/s (using 48 data points, chi2=0.00)
[2025-10-13 10:38:01] 2025-10-13 08:37:27,798 | INFO     | could have reported an average CPU frequency of 2767 MHz (5 samples)
[2025-10-13 10:38:01] 2025-10-13 08:37:27,799 | INFO     | ..............................
[2025-10-13 10:38:01] 2025-10-13 08:37:27,799 | INFO     | . Timing measurements:
[2025-10-13 10:38:01] 2025-10-13 08:37:27,799 | INFO     | . get job = 0 s
[2025-10-13 10:38:01] 2025-10-13 08:37:27,799 | INFO     | . initial setup = 1 s
[2025-10-13 10:38:01] 2025-10-13 08:37:27,799 | INFO     | . payload setup = 7 s
[2025-10-13 10:38:01] 2025-10-13 08:37:27,799 | INFO     | . stage-in = 0 s
[2025-10-13 10:38:01] 2025-10-13 08:37:27,799 | INFO     | . payload execution = 3313 s
[2025-10-13 10:38:01] 2025-10-13 08:37:27,799 | INFO     | . stage-out = 0 s
[2025-10-13 10:38:01] 2025-10-13 08:37:27,799 | INFO     | . log creation = 0 s
[2025-10-13 10:38:01] 2025-10-13 08:37:27,799 | INFO     | ..............................
[2025-10-13 10:38:01] 2025-10-13 08:37:28,137 | INFO     | 
[2025-10-13 10:38:01] 2025-10-13 08:37:28,137 | INFO     | job summary report
[2025-10-13 10:38:01] 2025-10-13 08:37:28,137 | INFO     | --------------------------------------------------
[2025-10-13 10:38:01] 2025-10-13 08:37:28,138 | INFO     | PanDA job id: 6840962048
[2025-10-13 10:38:01] 2025-10-13 08:37:28,138 | INFO     | task id: 46676269
[2025-10-13 10:38:01] 2025-10-13 08:37:28,138 | INFO     | errors: (none)
[2025-10-13 10:38:01] 2025-10-13 08:37:28,138 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 10:38:01] 2025-10-13 08:37:28,138 | INFO     | pilot state: finished 
[2025-10-13 10:38:01] 2025-10-13 08:37:28,138 | INFO     | transexitcode: 0
[2025-10-13 10:38:01] 2025-10-13 08:37:28,138 | INFO     | exeerrorcode: 0
[2025-10-13 10:38:01] 2025-10-13 08:37:28,138 | INFO     | exeerrordiag: 
[2025-10-13 10:38:01] 2025-10-13 08:37:28,138 | INFO     | exitcode: 0
[2025-10-13 10:38:01] 2025-10-13 08:37:28,138 | INFO     | exitmsg: OK
[2025-10-13 10:38:01] 2025-10-13 08:37:28,138 | INFO     | cpuconsumptiontime: 34798 s
[2025-10-13 10:38:01] 2025-10-13 08:37:28,138 | INFO     | nevents: 400
[2025-10-13 10:38:01] 2025-10-13 08:37:28,138 | INFO     | neventsw: 0
[2025-10-13 10:38:01] 2025-10-13 08:37:28,139 | INFO     | pid: 49118
[2025-10-13 10:38:01] 2025-10-13 08:37:28,139 | INFO     | pgrp: 49118
[2025-10-13 10:38:01] 2025-10-13 08:37:28,139 | INFO     | corecount: 12
[2025-10-13 10:38:01] 2025-10-13 08:37:28,139 | INFO     | event service: False
[2025-10-13 10:38:01] 2025-10-13 08:37:28,139 | INFO     | sizes: {0: 2348636, 1: 2348835, 6: 2349097, 12: 2349125, 3325: 2374544, 3326: 2383544, 3328: 2383728, 3334: 2383954}
[2025-10-13 10:38:01] 2025-10-13 08:37:28,139 | INFO     | --------------------------------------------------
[2025-10-13 10:38:01] 2025-10-13 08:37:28,139 | INFO     | 
[2025-10-13 10:38:01] 2025-10-13 08:37:28,139 | INFO     | executing command: ls -lF /scratch/.boinc/slots/0
[2025-10-13 10:38:01] 2025-10-13 08:37:28,166 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 10:38:01] 2025-10-13 08:37:28,167 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 10:38:01] 2025-10-13 08:37:28,167 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 10:38:01] 2025-10-13 08:37:28,167 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 10:38:01] 2025-10-13 08:37:28,167 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 10:38:01] 2025-10-13 08:37:28,167 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 10:38:01] 2025-10-13 08:37:28,167 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 10:38:01] 2025-10-13 08:37:28,167 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 10:38:01] 2025-10-13 08:37:28,167 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 10:38:01] 2025-10-13 08:37:28,168 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 10:38:01] 2025-10-13 08:37:28,168 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 10:38:01] 2025-10-13 08:37:28,168 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 10:38:01] 2025-10-13 08:37:28,168 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 10:38:01] 2025-10-13 08:37:28,168 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 10:38:01] 2025-10-13 08:37:28,168 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 10:38:01] 2025-10-13 08:37:28,168 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 10:38:01] 2025-10-13 08:37:28,168 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 10:38:01] 2025-10-13 08:37:28,168 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 10:38:01] 2025-10-13 08:37:28,168 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 10:38:01] 2025-10-13 08:37:28,169 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 10:38:01] 2025-10-13 08:37:28,169 | INFO     | job 6840962048 has completed (purged errors)
[2025-10-13 10:38:01] 2025-10-13 08:37:28,169 | INFO     | overall cleanup function is called
[2025-10-13 10:38:01] 2025-10-13 08:37:29,179 | INFO     | --- collectZombieJob: --- 10, [49118]
[2025-10-13 10:38:01] 2025-10-13 08:37:29,179 | INFO     | zombie collector waiting for pid 49118
[2025-10-13 10:38:01] 2025-10-13 08:37:29,179 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 10:38:01] 2025-10-13 08:37:29,179 | INFO     | collected zombie processes
[2025-10-13 10:38:01] 2025-10-13 08:37:29,179 | INFO     | will attempt to kill all subprocesses of pid=49118
[2025-10-13 10:38:01] 2025-10-13 08:37:29,548 | INFO     | process IDs to be killed: [49118] (in reverse order)
[2025-10-13 10:38:01] 2025-10-13 08:37:29,658 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 10:38:01] 2025-10-13 08:37:29,659 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 10:38:01] 2025-10-13 08:37:29,671 | INFO     | did not find any defunct processes belonging to 49118
[2025-10-13 10:38:01] 2025-10-13 08:37:29,681 | INFO     | did not find any defunct processes belonging to 49118
[2025-10-13 10:38:01] 2025-10-13 08:37:29,682 | INFO     | ready for new job
[2025-10-13 10:38:01] 2025-10-13 08:37:29,682 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 10:38:01] 2025-10-13 08:37:29,683 | INFO     | ***************************************
[2025-10-13 10:38:01] 2025-10-13 08:37:29,684 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 10:38:01] 2025-10-13 08:37:29,684 | INFO     | ***************************************
[2025-10-13 10:38:01] 2025-10-13 08:37:29,684 | INFO     | 
[2025-10-13 10:38:01] 2025-10-13 08:37:29,690 | INFO     | architecture information:
[2025-10-13 10:38:01] 2025-10-13 08:37:29,690 | INFO     | executing command: cat /etc/os-release
[2025-10-13 10:38:01] 2025-10-13 08:37:29,718 | INFO     | cat /etc/os-release:
[2025-10-13 10:38:01] NAME="CentOS Linux"
[2025-10-13 10:38:01] VERSION="7 (Core)"
[2025-10-13 10:38:01] ID="centos"
[2025-10-13 10:38:01] ID_LIKE="rhel fedora"
[2025-10-13 10:38:01] VERSION_ID="7"
[2025-10-13 10:38:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 10:38:01] ANSI_COLOR="0;31"
[2025-10-13 10:38:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 10:38:01] HOME_URL="https://www.centos.org/"
[2025-10-13 10:38:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 10:38:01] 
[2025-10-13 10:38:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 10:38:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 10:38:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 10:38:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 10:38:01] 
[2025-10-13 10:38:01] 2025-10-13 08:37:29,719 | INFO     | ***************************************
[2025-10-13 10:38:01] 2025-10-13 08:37:30,221 | INFO     | executing command: df -mP /scratch/.boinc/slots/0
[2025-10-13 10:38:01] 2025-10-13 08:37:30,247 | INFO     | sufficient remaining disk space (1681066557440 B)
[2025-10-13 10:38:01] 2025-10-13 08:37:30,247 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 10:38:01] 2025-10-13 08:37:30,248 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 10:38:01] 2025-10-13 08:37:30,248 | INFO     | update_server=False
[2025-10-13 10:38:01] 2025-10-13 08:37:30,248 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 10:38:01] 2025-10-13 08:37:30,280 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 10:38:01] 2025-10-13 08:37:30,520 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 10:38:01] 2025-10-13 08:37:30,520 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 10:38:01] 2025-10-13 08:37:30,520 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:38:01] 2025-10-13 08:37:30,521 | INFO     | will abort loop
[2025-10-13 10:38:01] 2025-10-13 08:37:31,165 | INFO     | all data control threads have been joined
[2025-10-13 10:38:01] 2025-10-13 08:37:31,251 | INFO     | [job] retrieve thread has finished
[2025-10-13 10:38:01] 2025-10-13 08:37:31,525 | INFO     | [job] job monitor thread has finished
[2025-10-13 10:38:01] 2025-10-13 08:37:31,683 | INFO     | all payload control threads have been joined
[2025-10-13 10:38:01] 2025-10-13 08:37:31,846 | INFO     | [payload] failed_post thread has finished
[2025-10-13 10:38:01] 2025-10-13 08:37:31,853 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 10:38:01] 2025-10-13 08:37:31,865 | INFO     | all job control threads have been joined
[2025-10-13 10:38:01] 2025-10-13 08:37:32,158 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 10:38:01] 2025-10-13 08:37:32,170 | INFO     | [data] control thread has finished
[2025-10-13 10:38:01] 2025-10-13 08:37:32,285 | INFO     | [data] copytool_out thread has finished
[2025-10-13 10:38:01] 2025-10-13 08:37:32,289 | INFO     | [data] copytool_in thread has finished
[2025-10-13 10:38:01] 2025-10-13 08:37:32,354 | INFO     | [job] validate thread has finished
[2025-10-13 10:38:01] 2025-10-13 08:37:32,538 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 10:38:01] 2025-10-13 08:37:32,602 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 10:38:01] 2025-10-13 08:37:32,689 | INFO     | [payload] control thread has finished
[2025-10-13 10:38:01] 2025-10-13 08:37:32,744 | INFO     | [payload] validate_post thread has finished
[2025-10-13 10:38:01] 2025-10-13 08:37:32,748 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 10:38:01] 2025-10-13 08:37:32,871 | INFO     | [job] control thread has finished
[2025-10-13 10:38:01] 2025-10-13 08:37:32,903 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:38:01] 2025-10-13 08:37:33,908 | INFO     | [job] queue monitor thread has finished
[2025-10-13 10:38:01] 2025-10-13 08:37:36,545 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 10:38:01] 2025-10-13 08:37:41,972 | INFO     | [monitor] cgroup control has ended
[2025-10-13 10:38:01] 2025-10-13 08:37:43,921 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140631016052544)>', '<ExcThread(monitor, started 140630734898944)>']
[2025-10-13 10:38:01] 2025-10-13 08:37:48,947 | INFO     | all workflow threads have been joined
[2025-10-13 10:38:01] 2025-10-13 08:37:48,948 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 10:38:01] 2025-10-13 08:37:48,948 | INFO     | traces error code: 0
[2025-10-13 10:38:01] 2025-10-13 08:37:48,948 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 10:38:01] 2025-10-13 08:38:00,640 | INFO     | PID=40983 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 10:38:01] 2025-10-13 08:38:00,641 | INFO     | .. there are 8 such processes running
[2025-10-13 10:38:01] 2025-10-13 08:38:00,642 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 10:38:01] 2025-10-13 08:38:00,642 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 10:38:01] 2025-10-13 08:38:00,642 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 10:38:01] 2025-10-13 08:38:00,643 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 10:38:01] 2025-10-13 08:38:00,643 | INFO     | [monitor] control thread has ended
[2025-10-13 10:38:01] 2025-10-13 08:38:00,828 [wrapper] ==== pilot stdout END ====
[2025-10-13 10:38:01] 2025-10-13 08:38:00,832 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 10:38:01] 2025-10-13 08:38:00,836 [wrapper] pilotpid: 40983
[2025-10-13 10:38:01] 2025-10-13 08:38:00,840 [wrapper] Pilot exit status: 0
[2025-10-13 10:38:01] 2025-10-13 08:38:00,854 [wrapper] pandaids: 6840962048
[2025-10-13 10:38:01] 2025-10-13 08:38:00,938 [wrapper] cleanup supervisor_pilot  212130 40984
[2025-10-13 10:38:01] 2025-10-13 08:38:00,942 [wrapper] Test setup, not cleaning
[2025-10-13 10:38:01] 2025-10-13 08:38:00,945 [wrapper] apfmon messages muted
[2025-10-13 10:38:01] 2025-10-13 08:38:00,949 [wrapper] ==== wrapper stdout END ====
[2025-10-13 10:38:01] 2025-10-13 08:38:00,953 [wrapper] ==== wrapper stderr END ====
[2025-10-13 10:38:01]  *** Error codes and diagnostics ***
[2025-10-13 10:38:01]     "exeErrorCode": 0,
[2025-10-13 10:38:01]     "exeErrorDiag": "",
[2025-10-13 10:38:01]     "pilotErrorCode": 0,
[2025-10-13 10:38:01]     "pilotErrorDiag": "",
[2025-10-13 10:38:01]  *** Listing of results directory ***
[2025-10-13 10:38:01] total 409104
[2025-10-13 10:38:01] -rw-r--r-- 1 boinc boinc    557409 Oct 13 01:11 pilot3.tar.gz
[2025-10-13 10:38:01] -rwx------ 1 boinc boinc     36292 Oct 13 01:15 runpilot2-wrapper.sh
[2025-10-13 10:38:01] -rw-r--r-- 1 boinc boinc      5112 Oct 13 01:15 queuedata.json
[2025-10-13 10:38:01] -rw-r--r-- 1 boinc boinc       100 Oct 13 09:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 10:38:01] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 09:41 run_atlas
[2025-10-13 10:38:01] -rw-r--r-- 1 boinc boinc       105 Oct 13 09:41 job.xml
[2025-10-13 10:38:01] -rw-r--r-- 2 boinc boinc 222205582 Oct 13 09:41 EVNT.46676267._004651.pool.root.1
[2025-10-13 10:38:01] -rw-r--r-- 1 boinc boinc      6665 Oct 13 09:41 init_data.xml
[2025-10-13 10:38:01] -rw-r--r-- 2 boinc boinc     15120 Oct 13 09:41 start_atlas.sh
[2025-10-13 10:38:01] drwxrwx--x 2 boinc boinc      4096 Oct 13 09:41 shared
[2025-10-13 10:38:01] -rw-r--r-- 2 boinc boinc    569671 Oct 13 09:41 input.tar.gz
[2025-10-13 10:38:01] -rw-r--r-- 1 boinc boinc         0 Oct 13 09:41 boinc_lockfile
[2025-10-13 10:38:01] -rw-r--r-- 1 boinc boinc      2549 Oct 13 09:41 pandaJob.out
[2025-10-13 10:38:01] -rw------- 1 boinc boinc    972849 Oct 13 09:41 agis_schedconf.cvmfs.json
[2025-10-13 10:38:01] -rw------- 1 boinc boinc   1560580 Oct 13 09:41 agis_ddmendpoints.agis.ALL.json
[2025-10-13 10:38:01] drwx------ 5 boinc boinc      4096 Oct 13 09:41 pilot3
[2025-10-13 10:38:01] -rw------- 1 boinc boinc 191074798 Oct 13 10:36 HITS.46676269._092035.pool.root.1
[2025-10-13 10:38:01] -rw-r--r-- 1 boinc boinc       529 Oct 13 10:36 boinc_task_state.xml
[2025-10-13 10:38:01] -rw------- 1 boinc boinc      1021 Oct 13 10:37 memory_monitor_summary.json
[2025-10-13 10:38:01] -rw------- 1 boinc boinc    368220 Oct 13 10:37 log.46676269._092035.job.log.tgz.1
[2025-10-13 10:38:01] -rw------- 1 boinc boinc      7782 Oct 13 10:37 heartbeat.json
[2025-10-13 10:38:01] -rw-r--r-- 1 boinc boinc      8192 Oct 13 10:38 boinc_mmap_file
[2025-10-13 10:38:01] -rw-r--r-- 1 boinc boinc        27 Oct 13 10:38 wrapper_checkpoint.txt
[2025-10-13 10:38:01] -rw------- 1 boinc boinc        95 Oct 13 10:38 pilot_heartbeat.json
[2025-10-13 10:38:01] -rw------- 1 boinc boinc       820 Oct 13 10:38 pilotlog.txt
[2025-10-13 10:38:01] -rw------- 1 boinc boinc    500492 Oct 13 10:38 log.46676269._092035.job.log.1
[2025-10-13 10:38:01] -rw------- 1 boinc boinc       357 Oct 13 10:38 output.list
[2025-10-13 10:38:01] -rw-r--r-- 1 boinc boinc       620 Oct 13 10:38 runtime_log
[2025-10-13 10:38:01] -rw------- 1 boinc boinc    890880 Oct 13 10:38 result.tar.gz
[2025-10-13 10:38:01] -rw-r--r-- 1 boinc boinc      8764 Oct 13 10:38 runtime_log.err
[2025-10-13 10:38:01] -rw------- 1 boinc boinc       663 Oct 13 10:38 3faMDmmSKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmj0lNDmNZcxAo.diag
[2025-10-13 10:38:01] -rw-r--r-- 1 boinc boinc     22363 Oct 13 10:38 stderr.txt
[2025-10-13 10:38:01] HITS file was successfully produced:
[2025-10-13 10:38:01] -rw------- 1 boinc boinc 191074798 Oct 13 10:36 shared/HITS.pool.root.1
[2025-10-13 10:38:01]  *** Contents of shared directory: ***
[2025-10-13 10:38:01] total 405056
[2025-10-13 10:38:01] -rw-r--r-- 2 boinc boinc 222205582 Oct 13 09:41 ATLAS.root_0
[2025-10-13 10:38:01] -rw-r--r-- 2 boinc boinc     15120 Oct 13 09:41 start_atlas.sh
[2025-10-13 10:38:01] -rw-r--r-- 2 boinc boinc    569671 Oct 13 09:41 input.tar.gz
[2025-10-13 10:38:01] -rw------- 1 boinc boinc 191074798 Oct 13 10:36 HITS.pool.root.1
[2025-10-13 10:38:01] -rw------- 1 boinc boinc    890880 Oct 13 10:38 result.tar.gz
10:38:02 (36902): run_atlas exited; CPU time 34849.911659
10:38:02 (36902): called boinc_finish(0)

</stderr_txt>
]]>

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