Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:08 (562531): wrapper (7.7.26015): starting
00:04:08 (562531): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 00:04:08] Arguments: --nthreads 12
[2025-10-13 00:04:08] Threads: 12
[2025-10-13 00:04:08] Checking for CVMFS
[2025-10-13 00:04:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:04:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:04:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:04:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:04:10] 2.13.2.0 850183 130178 490696 151647 1 778 25304843 32935936 33144 16776704 0 262084973 99.612 260885691 21025 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 00:04:10] CVMFS is ok
[2025-10-13 00:04:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:04:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:04:10] Further information can be found at the LHC@home message board.
[2025-10-13 00:04:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:04:10] Checking for apptainer binary...
[2025-10-13 00:04:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:04:10] Running /usr/bin/apptainer --version
[2025-10-13 00:04:11] apptainer version 1.4.3-1.el9
[2025-10-13 00:04:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:04:12] c6-12-29-2.aglt2.org
[2025-10-13 00:04:12] apptainer works
[2025-10-13 00:04:12] Set ATHENA_PROC_NUMBER=12
[2025-10-13 00:04:12] Set ATHENA_CORE_NUMBER=12
[2025-10-13 00:04:12] Starting ATLAS job with PandaID=6840852000
[2025-10-13 00:04:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:09:19]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:09:19] 2025-10-13 09:08:33,112 | INFO     | current chi2=3.222304698616314 (change=0.004923317970850787 %)
[2025-10-13 05:09:19] 2025-10-13 09:08:33,112 | INFO     | right removable region: 289
[2025-10-13 05:09:19] 2025-10-13 09:08:33,113 | INFO     | sum of square deviations: 7562275941.6862
[2025-10-13 05:09:19] 2025-10-13 09:08:33,114 | INFO     | sum of deviations: 65524812419.931076
[2025-10-13 05:09:19] 2025-10-13 09:08:33,115 | INFO     | mean x: 1760337622.3068964
[2025-10-13 05:09:19] 2025-10-13 09:08:33,115 | INFO     | mean y: 2519483.0344827585
[2025-10-13 05:09:19] 2025-10-13 09:08:33,115 | INFO     | -- intersect: -15250268617.645113
[2025-10-13 05:09:19] 2025-10-13 09:08:33,115 | INFO     | intersect: -15250268617.645113
[2025-10-13 05:09:19] 2025-10-13 09:08:33,115 | INFO     | chi2: 0.5419988377671237
[2025-10-13 05:09:19] 2025-10-13 09:08:33,116 | INFO     | current chi2=0.5419988377671237 (change=83.18060505967453 %)
[2025-10-13 05:09:19] 2025-10-13 09:08:33,116 | INFO     | sum of square deviations: 7177776925.14389
[2025-10-13 05:09:19] 2025-10-13 09:08:33,118 | INFO     | sum of deviations: 35850217523.38596
[2025-10-13 05:09:19] 2025-10-13 09:08:33,118 | INFO     | mean x: 1760337774.8140352
[2025-10-13 05:09:19] 2025-10-13 09:08:33,118 | INFO     | mean y: 2531229.403508772
[2025-10-13 05:09:19] 2025-10-13 09:08:33,118 | INFO     | -- intersect: -8789674602.550688
[2025-10-13 05:09:19] 2025-10-13 09:08:33,118 | INFO     | intersect: -8789674602.550688
[2025-10-13 05:09:19] 2025-10-13 09:08:33,119 | INFO     | chi2: 0.20178918032176965
[2025-10-13 05:09:19] 2025-10-13 09:08:33,119 | INFO     | current chi2=0.20178918032176965 (change=62.76944409086154 %)
[2025-10-13 05:09:19] 2025-10-13 09:08:33,129 | INFO     | sum of square deviations: 6806533727.07143
[2025-10-13 05:09:19] 2025-10-13 09:08:33,131 | INFO     | sum of deviations: 14587698290.178572
[2025-10-13 05:09:19] 2025-10-13 09:08:33,132 | INFO     | mean x: 1760337927.3214285
[2025-10-13 05:09:19] 2025-10-13 09:08:33,132 | INFO     | mean y: 2539945.0535714286
[2025-10-13 05:09:19] 2025-10-13 09:08:33,132 | INFO     | -- intersect: -3770199543.5336723
[2025-10-13 05:09:19] 2025-10-13 09:08:33,132 | INFO     | intersect: -3770199543.5336723
[2025-10-13 05:09:19] 2025-10-13 09:08:33,134 | INFO     | chi2: 0.012121003838512164
[2025-10-13 05:09:19] 2025-10-13 09:08:33,134 | INFO     | current chi2=0.012121003838512164 (change=93.99323401820445 %)
[2025-10-13 05:09:19] 2025-10-13 09:08:33,135 | INFO     | sum of square deviations: 6448382717.541805
[2025-10-13 05:09:19] 2025-10-13 09:08:33,137 | INFO     | sum of deviations: 11164483737.250912
[2025-10-13 05:09:19] 2025-10-13 09:08:33,138 | INFO     | mean x: 1760338079.8145454
[2025-10-13 05:09:19] 2025-10-13 09:08:33,138 | INFO     | mean y: 2541397.887272727
[2025-10-13 05:09:19] 2025-10-13 09:08:33,138 | INFO     | -- intersect: -3045240770.917533
[2025-10-13 05:09:19] 2025-10-13 09:08:33,138 | INFO     | intersect: -3045240770.917533
[2025-10-13 05:09:19] 2025-10-13 09:08:33,138 | INFO     | chi2: 0.008290575449171344
[2025-10-13 05:09:19] 2025-10-13 09:08:33,138 | INFO     | current chi2=0.008290575449171344 (change=31.601577232162644 %)
[2025-10-13 05:09:19] 2025-10-13 09:08:33,139 | INFO     | sum of square deviations: 6102988606.240717
[2025-10-13 05:09:19] 2025-10-13 09:08:33,141 | INFO     | sum of deviations: 9295580724.851849
[2025-10-13 05:09:19] 2025-10-13 09:08:33,141 | INFO     | mean x: 1760338232.3148148
[2025-10-13 05:09:19] 2025-10-13 09:08:33,142 | INFO     | mean y: 2542222.837037037
[2025-10-13 05:09:19] 2025-10-13 09:08:33,142 | INFO     | -- intersect: -2678663199.1741924
[2025-10-13 05:09:19] 2025-10-13 09:08:33,142 | INFO     | intersect: -2678663199.1741924
[2025-10-13 05:09:19] 2025-10-13 09:08:33,142 | INFO     | chi2: 0.007475805996161886
[2025-10-13 05:09:19] 2025-10-13 09:08:33,142 | INFO     | current chi2=0.007475805996161886 (change=9.82765862279072 %)
[2025-10-13 05:09:19] 2025-10-13 09:08:33,143 | INFO     | left removable region: 50
[2025-10-13 05:09:19] 2025-10-13 09:08:33,143 | INFO     | sum of square deviations: 4233118624.4351315
[2025-10-13 05:09:19] 2025-10-13 09:08:33,145 | INFO     | sum of deviations: 5924049293.213391
[2025-10-13 05:09:19] 2025-10-13 09:08:33,145 | INFO     | mean x: 1760338811.753138
[2025-10-13 05:09:19] 2025-10-13 09:08:33,145 | INFO     | mean y: 2542996.7154811714
[2025-10-13 05:09:19] 2025-10-13 09:08:33,145 | INFO     | -- intersect: -2460967908.3146935
[2025-10-13 05:09:19] 2025-10-13 09:08:33,145 | INFO     | intersect: -2460967908.3146935
[2025-10-13 05:09:19] 2025-10-13 09:08:33,146 | INFO     | chi2: 0.006155948455210561
[2025-10-13 05:09:19] 2025-10-13 09:08:33,146 | INFO     | -- intersect: -2460967908.3146935
[2025-10-13 05:09:19] 2025-10-13 09:08:33,146 | INFO     | current memory leak: 1.40 B/s (using 239 data points, chi2=0.01)
[2025-10-13 05:09:19] 2025-10-13 09:08:33,147 | INFO     | could have reported an average CPU frequency of 2553 MHz (13 samples)
[2025-10-13 05:09:19] 2025-10-13 09:08:33,147 | INFO     | ..............................
[2025-10-13 05:09:19] 2025-10-13 09:08:33,147 | INFO     | . Timing measurements:
[2025-10-13 05:09:19] 2025-10-13 09:08:33,147 | INFO     | . get job = 0 s
[2025-10-13 05:09:19] 2025-10-13 09:08:33,147 | INFO     | . initial setup = 10 s
[2025-10-13 05:09:19] 2025-10-13 09:08:33,147 | INFO     | . payload setup = 45 s
[2025-10-13 05:09:19] 2025-10-13 09:08:33,148 | INFO     | . stage-in = 0 s
[2025-10-13 05:09:19] 2025-10-13 09:08:33,148 | INFO     | . payload execution = 18021 s
[2025-10-13 05:09:19] 2025-10-13 09:08:33,148 | INFO     | . stage-out = 2 s
[2025-10-13 05:09:19] 2025-10-13 09:08:33,148 | INFO     | . log creation = 0 s
[2025-10-13 05:09:19] 2025-10-13 09:08:33,148 | INFO     | ..............................
[2025-10-13 05:09:19] 2025-10-13 09:08:33,298 | INFO     | 
[2025-10-13 05:09:19] 2025-10-13 09:08:33,299 | INFO     | job summary report
[2025-10-13 05:09:19] 2025-10-13 09:08:33,299 | INFO     | --------------------------------------------------
[2025-10-13 05:09:19] 2025-10-13 09:08:33,299 | INFO     | PanDA job id: 6840852000
[2025-10-13 05:09:19] 2025-10-13 09:08:33,299 | INFO     | task id: 46676269
[2025-10-13 05:09:19] 2025-10-13 09:08:33,299 | INFO     | errors: (none)
[2025-10-13 05:09:19] 2025-10-13 09:08:33,299 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:09:19] 2025-10-13 09:08:33,299 | INFO     | pilot state: finished 
[2025-10-13 05:09:19] 2025-10-13 09:08:33,299 | INFO     | transexitcode: 0
[2025-10-13 05:09:19] 2025-10-13 09:08:33,299 | INFO     | exeerrorcode: 0
[2025-10-13 05:09:19] 2025-10-13 09:08:33,299 | INFO     | exeerrordiag: 
[2025-10-13 05:09:19] 2025-10-13 09:08:33,299 | INFO     | exitcode: 0
[2025-10-13 05:09:19] 2025-10-13 09:08:33,299 | INFO     | exitmsg: OK
[2025-10-13 05:09:19] 2025-10-13 09:08:33,299 | INFO     | cpuconsumptiontime: 48827 s
[2025-10-13 05:09:19] 2025-10-13 09:08:33,300 | INFO     | nevents: 400
[2025-10-13 05:09:19] 2025-10-13 09:08:33,300 | INFO     | neventsw: 0
[2025-10-13 05:09:19] 2025-10-13 09:08:33,300 | INFO     | pid: 595948
[2025-10-13 05:09:19] 2025-10-13 09:08:33,300 | INFO     | pgrp: 595948
[2025-10-13 05:09:19] 2025-10-13 09:08:33,300 | INFO     | corecount: 12
[2025-10-13 05:09:19] 2025-10-13 09:08:33,300 | INFO     | event service: False
[2025-10-13 05:09:19] 2025-10-13 09:08:33,300 | INFO     | sizes: {0: 2348027, 1: 2348712, 2: 2348911, 3: 2348911, 14: 2348939, 25: 2348967, 36: 2349123, 38: 2349413, 47: 2349441, 18071: 2381491, 18075: 2390489, 18076: 239
[2025-10-13 05:09:19] 2025-10-13 09:08:33,300 | INFO     | --------------------------------------------------
[2025-10-13 05:09:19] 2025-10-13 09:08:33,300 | INFO     | 
[2025-10-13 05:09:19] 2025-10-13 09:08:33,300 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-10-13 05:09:19] 2025-10-13 09:08:33,335 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:09:19] 2025-10-13 09:08:33,336 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:09:19] 2025-10-13 09:08:33,336 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:09:19] 2025-10-13 09:08:33,336 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:09:19] 2025-10-13 09:08:33,336 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:09:19] 2025-10-13 09:08:33,336 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:09:19] 2025-10-13 09:08:33,336 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:09:19] 2025-10-13 09:08:33,336 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:09:19] 2025-10-13 09:08:33,336 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:09:19] 2025-10-13 09:08:33,336 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:09:19] 2025-10-13 09:08:33,336 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:09:19] 2025-10-13 09:08:33,336 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:09:19] 2025-10-13 09:08:33,336 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:09:19] 2025-10-13 09:08:33,336 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:09:19] 2025-10-13 09:08:33,337 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:09:19] 2025-10-13 09:08:33,337 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:09:19] 2025-10-13 09:08:33,337 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:09:19] 2025-10-13 09:08:33,337 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:09:19] 2025-10-13 09:08:33,337 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:09:19] 2025-10-13 09:08:33,337 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:09:19] 2025-10-13 09:08:33,337 | INFO     | job 6840852000 has completed (purged errors)
[2025-10-13 05:09:19] 2025-10-13 09:08:33,337 | INFO     | overall cleanup function is called
[2025-10-13 05:09:19] 2025-10-13 09:08:34,346 | INFO     | --- collectZombieJob: --- 10, [595948]
[2025-10-13 05:09:19] 2025-10-13 09:08:34,347 | INFO     | zombie collector waiting for pid 595948
[2025-10-13 05:09:19] 2025-10-13 09:08:34,347 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:09:19] 2025-10-13 09:08:34,347 | INFO     | collected zombie processes
[2025-10-13 05:09:19] 2025-10-13 09:08:34,347 | INFO     | will attempt to kill all subprocesses of pid=595948
[2025-10-13 05:09:19] 2025-10-13 09:08:34,804 | INFO     | process IDs to be killed: [595948] (in reverse order)
[2025-10-13 05:09:19] 2025-10-13 09:08:34,948 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:09:19] 2025-10-13 09:08:34,948 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:09:19] 2025-10-13 09:08:34,968 | INFO     | did not find any defunct processes belonging to 595948
[2025-10-13 05:09:19] 2025-10-13 09:08:34,988 | INFO     | did not find any defunct processes belonging to 595948
[2025-10-13 05:09:19] 2025-10-13 09:08:34,988 | INFO     | ready for new job
[2025-10-13 05:09:19] 2025-10-13 09:08:34,988 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:09:19] 2025-10-13 09:08:34,990 | INFO     | ***************************************
[2025-10-13 05:09:19] 2025-10-13 09:08:34,990 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:09:19] 2025-10-13 09:08:34,990 | INFO     | ***************************************
[2025-10-13 05:09:19] 2025-10-13 09:08:34,991 | INFO     | 
[2025-10-13 05:09:19] 2025-10-13 09:08:35,011 | INFO     | architecture information:
[2025-10-13 05:09:19] 2025-10-13 09:08:35,011 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:09:19] 2025-10-13 09:08:35,033 | INFO     | cat /etc/os-release:
[2025-10-13 05:09:19] NAME="CentOS Linux"
[2025-10-13 05:09:19] VERSION="7 (Core)"
[2025-10-13 05:09:19] ID="centos"
[2025-10-13 05:09:19] ID_LIKE="rhel fedora"
[2025-10-13 05:09:19] VERSION_ID="7"
[2025-10-13 05:09:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:09:19] ANSI_COLOR="0;31"
[2025-10-13 05:09:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:09:19] HOME_URL="https://www.centos.org/"
[2025-10-13 05:09:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:09:19] 
[2025-10-13 05:09:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:09:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:09:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:09:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:09:19] 
[2025-10-13 05:09:19] 2025-10-13 09:08:35,033 | INFO     | ***************************************
[2025-10-13 05:09:19] 2025-10-13 09:08:35,537 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-13 05:09:19] 2025-10-13 09:08:35,579 | INFO     | sufficient remaining disk space (93967089664 B)
[2025-10-13 05:09:19] 2025-10-13 09:08:35,580 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:09:19] 2025-10-13 09:08:35,580 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:09:19] 2025-10-13 09:08:35,580 | INFO     | update_server=False
[2025-10-13 05:09:19] 2025-10-13 09:08:35,580 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:09:19] 2025-10-13 09:08:35,823 | INFO     | all job control threads have been joined
[2025-10-13 05:09:19] 2025-10-13 09:08:35,925 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 05:09:19] 2025-10-13 09:08:35,926 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 05:09:19] 2025-10-13 09:08:35,926 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:09:19] 2025-10-13 09:08:35,926 | INFO     | will abort loop
[2025-10-13 05:09:19] 2025-10-13 09:08:36,371 | INFO     | all payload control threads have been joined
[2025-10-13 05:09:19] 2025-10-13 09:08:36,380 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:09:19] 2025-10-13 09:08:36,586 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:09:19] 2025-10-13 09:08:36,664 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:09:19] 2025-10-13 09:08:36,665 | INFO     | all data control threads have been joined
[2025-10-13 05:09:19] 2025-10-13 09:08:36,666 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:09:19] 2025-10-13 09:08:36,668 | INFO     | [job] validate thread has finished
[2025-10-13 05:09:19] 2025-10-13 09:08:36,680 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:09:19] 2025-10-13 09:08:36,832 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:09:19] 2025-10-13 09:08:36,834 | INFO     | [job] control thread has finished
[2025-10-13 05:09:19] 2025-10-13 09:08:36,931 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:09:19] 2025-10-13 09:08:36,959 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:09:19] 2025-10-13 09:08:37,209 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:09:19] 2025-10-13 09:08:37,377 | INFO     | [payload] control thread has finished
[2025-10-13 05:09:19] 2025-10-13 09:08:37,466 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:09:19] 2025-10-13 09:08:37,671 | INFO     | [data] control thread has finished
[2025-10-13 05:09:19] 2025-10-13 09:08:37,971 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:09:19] 2025-10-13 09:08:38,319 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:09:19] 2025-10-13 09:08:38,386 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:09:19] 2025-10-13 09:08:39,325 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:09:19] 2025-10-13 09:08:40,673 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:09:19] 2025-10-13 09:09:06,476 | INFO     | PID=574029 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 05:09:19] 2025-10-13 09:09:06,476 | INFO     | .. there are 33 such processes running
[2025-10-13 05:09:19] 2025-10-13 09:09:06,477 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:09:19] 2025-10-13 09:09:06,477 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:09:19] 2025-10-13 09:09:06,477 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:09:19] 2025-10-13 09:09:12,988 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:09:19] 2025-10-13 09:09:14,363 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140362439018304)>', '<ExcThread(monitor, started 140361812932352)>']
[2025-10-13 05:09:19] 2025-10-13 09:09:14,545 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:09:19] 2025-10-13 09:09:14,546 | INFO     | [monitor] control thread has ended
[2025-10-13 05:09:19] 2025-10-13 09:09:19,388 | INFO     | all workflow threads have been joined
[2025-10-13 05:09:19] 2025-10-13 09:09:19,389 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:09:19] 2025-10-13 09:09:19,389 | INFO     | traces error code: 0
[2025-10-13 05:09:19] 2025-10-13 09:09:19,389 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:09:19] 2025-10-13 09:09:19,603 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:09:19] 2025-10-13 09:09:19,607 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:09:19] 2025-10-13 09:09:19,610 [wrapper] pilotpid: 574029
[2025-10-13 05:09:19] 2025-10-13 09:09:19,614 [wrapper] Pilot exit status: 0
[2025-10-13 05:09:19] 2025-10-13 09:09:19,632 [wrapper] pandaids: 6840852000
[2025-10-13 05:09:19] 2025-10-13 09:09:19,736 [wrapper] cleanup supervisor_pilot 1555783 574030
[2025-10-13 05:09:19] 2025-10-13 09:09:19,739 [wrapper] Test setup, not cleaning
[2025-10-13 05:09:19] 2025-10-13 09:09:19,743 [wrapper] apfmon messages muted
[2025-10-13 05:09:19] 2025-10-13 09:09:19,747 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:09:19] 2025-10-13 09:09:19,750 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:09:19]  *** Error codes and diagnostics ***
[2025-10-13 05:09:19]     "exeErrorCode": 0,
[2025-10-13 05:09:19]     "exeErrorDiag": "",
[2025-10-13 05:09:19]     "pilotErrorCode": 0,
[2025-10-13 05:09:19]     "pilotErrorDiag": "",
[2025-10-13 05:09:19]  *** Listing of results directory ***
[2025-10-13 05:09:19] total 414108
[2025-10-13 05:09:19] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-13 05:09:19] -rwx------. 1 boincer umatlas     36292 Oct 12 18:32 runpilot2-wrapper.sh
[2025-10-13 05:09:19] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 18:33 queuedata.json
[2025-10-13 05:09:19] -rw-r--r--. 1 boincer umatlas       100 Oct 13 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:09:19] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 00:04 run_atlas
[2025-10-13 05:09:19] -rw-r--r--. 1 boincer umatlas       105 Oct 13 00:04 job.xml
[2025-10-13 05:09:19] -rw-r--r--. 2 boincer umatlas 219361608 Oct 13 00:04 EVNT.46676267._004619.pool.root.1
[2025-10-13 05:09:19] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:04 start_atlas.sh
[2025-10-13 05:09:19] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 00:04 shared
[2025-10-13 05:09:19] -rw-r--r--. 2 boincer umatlas    569679 Oct 13 00:04 input.tar.gz
[2025-10-13 05:09:19] -rw-r--r--. 1 boincer umatlas         0 Oct 13 00:04 boinc_lockfile
[2025-10-13 05:09:19] -rw-r--r--. 1 boincer umatlas      2549 Oct 13 00:04 pandaJob.out
[2025-10-13 05:09:19] -rw-------. 1 boincer umatlas    974373 Oct 13 00:05 agis_schedconf.cvmfs.json
[2025-10-13 05:09:19] drwx------. 5 boincer umatlas      4096 Oct 13 00:05 pilot3
[2025-10-13 05:09:19] -rw-------. 1 boincer umatlas 195513774 Oct 13 05:07 HITS.46676269._091179.pool.root.1
[2025-10-13 05:09:19] -rw-r--r--. 1 boincer umatlas       531 Oct 13 05:07 boinc_task_state.xml
[2025-10-13 05:09:19] -rw-------. 1 boincer umatlas      1055 Oct 13 05:08 memory_monitor_summary.json
[2025-10-13 05:09:19] -rw-------. 1 boincer umatlas   1560580 Oct 13 05:08 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:09:19] -rw-------. 1 boincer umatlas    537870 Oct 13 05:08 log.46676269._091179.job.log.tgz.1
[2025-10-13 05:09:19] -rw-------. 1 boincer umatlas      7859 Oct 13 05:08 heartbeat.json
[2025-10-13 05:09:19] -rw-------. 1 boincer umatlas        95 Oct 13 05:09 pilot_heartbeat.json
[2025-10-13 05:09:19] -rw-r--r--. 1 boincer umatlas      6860 Oct 13 05:09 init_data.xml
[2025-10-13 05:09:19] -rw-r--r--. 1 boincer umatlas        28 Oct 13 05:09 wrapper_checkpoint.txt
[2025-10-13 05:09:19] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 05:09 boinc_mmap_file
[2025-10-13 05:09:19] -rw-------. 1 boincer umatlas      5009 Oct 13 05:09 pilotlog.txt
[2025-10-13 05:09:19] -rw-------. 1 boincer umatlas   2094749 Oct 13 05:09 log.46676269._091179.job.log.1
[2025-10-13 05:09:19] -rw-------. 1 boincer umatlas       357 Oct 13 05:09 output.list
[2025-10-13 05:09:19] -rw-r--r--. 1 boincer umatlas       620 Oct 13 05:09 runtime_log
[2025-10-13 05:09:19] -rw-------. 1 boincer umatlas   2652160 Oct 13 05:09 result.tar.gz
[2025-10-13 05:09:19] -rw-r--r--. 1 boincer umatlas      8716 Oct 13 05:09 runtime_log.err
[2025-10-13 05:09:19] -rw-------. 1 boincer umatlas       662 Oct 13 05:09 GmoNDmlnJS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmdBVMDmlXY9jn.diag
[2025-10-13 05:09:19] -rw-r--r--. 1 boincer umatlas     21133 Oct 13 05:09 stderr.txt
[2025-10-13 05:09:19] HITS file was successfully produced:
[2025-10-13 05:09:19] -rw-------. 1 boincer umatlas 195513774 Oct 13 05:07 shared/HITS.pool.root.1
[2025-10-13 05:09:19]  *** Contents of shared directory: ***
[2025-10-13 05:09:19] total 408332
[2025-10-13 05:09:19] -rw-r--r--. 2 boincer umatlas 219361608 Oct 13 00:04 ATLAS.root_0
[2025-10-13 05:09:19] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:04 start_atlas.sh
[2025-10-13 05:09:19] -rw-r--r--. 2 boincer umatlas    569679 Oct 13 00:04 input.tar.gz
[2025-10-13 05:09:19] -rw-------. 1 boincer umatlas 195513774 Oct 13 05:07 HITS.pool.root.1
[2025-10-13 05:09:19] -rw-------. 1 boincer umatlas   2652160 Oct 13 05:09 result.tar.gz
05:09:21 (562531): run_atlas exited; CPU time 49566.419816
05:09:21 (562531): called boinc_finish(0)

</stderr_txt>
]]>

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