Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:34:13 (1390785): wrapper (7.7.26015): starting
00:34:13 (1390785): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 00:34:13] Arguments: --nthreads 8
[2025-10-13 00:34:13] Threads: 8
[2025-10-13 00:34:13] Checking for CVMFS
[2025-10-13 00:34:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:34:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:34:13] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:34:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:34:13] 2.13.2.0 9460 35195 230072 151649 0 57 31747978 32935937 2765 16776704 0 103443641 99.705 79614046 30073 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 00:34:13] CVMFS is ok
[2025-10-13 00:34:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:34:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:34:13] Further information can be found at the LHC@home message board.
[2025-10-13 00:34:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:34:13] Checking for apptainer binary...
[2025-10-13 00:34:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:34:13] Running /usr/bin/apptainer --version
[2025-10-13 00:34:13] apptainer version 1.4.3-1.el9
[2025-10-13 00:34:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:34:14] c-4-11.aglt2.org
[2025-10-13 00:34:14] apptainer works
[2025-10-13 00:34:14] Set ATHENA_PROC_NUMBER=8
[2025-10-13 00:34:14] Set ATHENA_CORE_NUMBER=8
[2025-10-13 00:34:14] Starting ATLAS job with PandaID=6840962099
[2025-10-13 00:34:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:54:35]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:54:35]  status_code=0
[2025-10-13 01:54:35]  storage_token=
[2025-10-13 01:54:35]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6840962099/log.46676269._092070.job.log.tgz.1
[2025-10-13 01:54:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/08/5f/log.46676269._092070.job.log.tgz.1
[2025-10-13 01:54:35]  workdir=None
[2025-10-13 01:54:35] ]
[2025-10-13 01:54:35] 2025-10-13 05:53:51,297 | INFO     | transferring file log.46676269._092070.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6840962099/log.46676269._092070.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 01:54:35] 2025-10-13 05:53:51,297 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6840962099/log.46676269._092070.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._092070.job
[2025-10-13 01:54:35] 2025-10-13 05:53:51,307 | INFO     | adding to output.list: log.46676269._092070.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/08/5f/log.46676269._092070.job.log.tg
[2025-10-13 01:54:35] 2025-10-13 05:53:51,308 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 01:54:35] 2025-10-13 05:53:51,308 | INFO     | summary of transferred files:
[2025-10-13 01:54:35] 2025-10-13 05:53:51,308 | INFO     |  -- lfn=log.46676269._092070.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 01:54:35] 2025-10-13 05:53:51,309 | INFO     | stage-out finished correctly
[2025-10-13 01:54:35] 2025-10-13 05:53:51,749 | INFO     | time since job start (4767s) is within the limit (172800.0s)
[2025-10-13 01:54:35] 2025-10-13 05:53:53,637 | INFO     | monitor loop #356: job 0:6840962099 is in state 'finished'
[2025-10-13 01:54:35] 2025-10-13 05:53:53,637 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:54:35] 2025-10-13 05:53:53,755 | INFO     | time since job start (4769s) is within the limit (172800.0s)
[2025-10-13 01:54:35] 2025-10-13 05:53:54,583 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 01:54:35] 2025-10-13 05:53:55,761 | INFO     | time since job start (4771s) is within the limit (172800.0s)
[2025-10-13 01:54:35] 2025-10-13 05:53:56,145 | INFO     | monitor loop #357: job 0:6840962099 is in state 'finished'
[2025-10-13 01:54:35] 2025-10-13 05:53:56,145 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:54:35] 2025-10-13 05:53:56,576 | INFO     | job 6840962099 has state=finished
[2025-10-13 01:54:35] 2025-10-13 05:53:56,576 | INFO     | preparing for final server update for job 6840962099 in state='finished'
[2025-10-13 01:54:35] 2025-10-13 05:53:56,637 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-13 01:54:35] 2025-10-13 05:53:56,638 | INFO     | this job has now completed (state=finished)
[2025-10-13 01:54:35] 2025-10-13 05:53:56,638 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 01:54:35] 2025-10-13 05:53:56,638 | INFO     | log transfer has been attempted: DONE
[2025-10-13 01:54:35] 2025-10-13 05:53:56,638 | INFO     | job 6840962099 has finished - writing final server update
[2025-10-13 01:54:35] 2025-10-13 05:53:56,638 | INFO     | total number of processed events: 400 (read)
[2025-10-13 01:54:35] 2025-10-13 05:53:56,639 | INFO     | executing command: lscpu
[2025-10-13 01:54:35] 2025-10-13 05:53:56,687 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 01:54:35] 2025-10-13 05:53:57,766 | INFO     | time since job start (4773s) is within the limit (172800.0s)
[2025-10-13 01:54:35] 2025-10-13 05:53:58,648 | INFO     | monitor loop #358: job 0:6840962099 is in state 'finished'
[2025-10-13 01:54:35] 2025-10-13 05:53:58,648 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:54:35] 2025-10-13 05:53:59,772 | INFO     | time since job start (4775s) is within the limit (172800.0s)
[2025-10-13 01:54:35] 2025-10-13 05:53:59,780 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 01:54:35] 2025-10-13 05:53:59,787 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2880.0672250000007
[2025-10-13 01:54:35] 2025-10-13 05:53:59,793 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6840962099/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:54:35] 2025-10-13 05:53:59,794 | INFO     | extracted standard info from prmon json
[2025-10-13 01:54:35] 2025-10-13 05:53:59,794 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 01:54:35] 2025-10-13 05:53:59,794 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 01:54:35] 2025-10-13 05:53:59,795 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 01:54:35] 2025-10-13 05:53:59,795 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 01:54:35] 2025-10-13 05:53:59,797 | INFO     | fitting pss+swap vs Time
[2025-10-13 01:54:35] 2025-10-13 05:53:59,797 | INFO     | sum of square deviations: 110960220.0
[2025-10-13 01:54:35] 2025-10-13 05:53:59,798 | INFO     | sum of deviations: -5981556483.0
[2025-10-13 01:54:35] 2025-10-13 05:53:59,798 | INFO     | mean x: 1760332527.0
[2025-10-13 01:54:35] 2025-10-13 05:53:59,798 | INFO     | mean y: 2257777.1408450706
[2025-10-13 01:54:35] 2025-10-13 05:53:59,798 | INFO     | -- intersect: 94896882527.45787
[2025-10-13 01:54:35] 2025-10-13 05:53:59,798 | INFO     | intersect: 94896882527.45787
[2025-10-13 01:54:35] 2025-10-13 05:53:59,798 | INFO     | chi2: 0.021343986752107663
[2025-10-13 01:54:35] 2025-10-13 05:53:59,799 | INFO     | -- intersect: 94896882527.45787
[2025-10-13 01:54:35] 2025-10-13 05:53:59,799 | INFO     | current memory leak: -53.91 B/s (using 71 data points, chi2=0.02)
[2025-10-13 01:54:35] 2025-10-13 05:53:59,799 | INFO     | could have reported an average CPU frequency of 2860 MHz (6 samples)
[2025-10-13 01:54:35] 2025-10-13 05:53:59,799 | INFO     | ..............................
[2025-10-13 01:54:35] 2025-10-13 05:53:59,799 | INFO     | . Timing measurements:
[2025-10-13 01:54:35] 2025-10-13 05:53:59,800 | INFO     | . get job = 0 s
[2025-10-13 01:54:35] 2025-10-13 05:53:59,800 | INFO     | . initial setup = 2 s
[2025-10-13 01:54:35] 2025-10-13 05:53:59,800 | INFO     | . payload setup = 4 s
[2025-10-13 01:54:35] 2025-10-13 05:53:59,800 | INFO     | . stage-in = 0 s
[2025-10-13 01:54:35] 2025-10-13 05:53:59,800 | INFO     | . payload execution = 4741 s
[2025-10-13 01:54:35] 2025-10-13 05:53:59,800 | INFO     | . stage-out = 1 s
[2025-10-13 01:54:35] 2025-10-13 05:53:59,800 | INFO     | . log creation = 0 s
[2025-10-13 01:54:35] 2025-10-13 05:53:59,800 | INFO     | ..............................
[2025-10-13 01:54:35] 2025-10-13 05:54:00,377 | INFO     | 
[2025-10-13 01:54:35] 2025-10-13 05:54:00,378 | INFO     | job summary report
[2025-10-13 01:54:35] 2025-10-13 05:54:00,378 | INFO     | --------------------------------------------------
[2025-10-13 01:54:35] 2025-10-13 05:54:00,378 | INFO     | PanDA job id: 6840962099
[2025-10-13 01:54:35] 2025-10-13 05:54:00,378 | INFO     | task id: 46676269
[2025-10-13 01:54:35] 2025-10-13 05:54:00,378 | INFO     | errors: (none)
[2025-10-13 01:54:35] 2025-10-13 05:54:00,378 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 01:54:35] 2025-10-13 05:54:00,379 | INFO     | pilot state: finished 
[2025-10-13 01:54:35] 2025-10-13 05:54:00,379 | INFO     | transexitcode: 0
[2025-10-13 01:54:35] 2025-10-13 05:54:00,379 | INFO     | exeerrorcode: 0
[2025-10-13 01:54:35] 2025-10-13 05:54:00,379 | INFO     | exeerrordiag: 
[2025-10-13 01:54:35] 2025-10-13 05:54:00,379 | INFO     | exitcode: 0
[2025-10-13 01:54:35] 2025-10-13 05:54:00,379 | INFO     | exitmsg: OK
[2025-10-13 01:54:35] 2025-10-13 05:54:00,379 | INFO     | cpuconsumptiontime: 35902 s
[2025-10-13 01:54:35] 2025-10-13 05:54:00,379 | INFO     | nevents: 400
[2025-10-13 01:54:35] 2025-10-13 05:54:00,379 | INFO     | neventsw: 0
[2025-10-13 01:54:35] 2025-10-13 05:54:00,380 | INFO     | pid: 1400993
[2025-10-13 01:54:35] 2025-10-13 05:54:00,380 | INFO     | pgrp: 1400993
[2025-10-13 01:54:35] 2025-10-13 05:54:00,380 | INFO     | corecount: 8
[2025-10-13 01:54:35] 2025-10-13 05:54:00,380 | INFO     | event service: False
[2025-10-13 01:54:35] 2025-10-13 05:54:00,380 | INFO     | sizes: {0: 2348743, 1: 2348885, 4: 2349147, 11: 2349175, 4749: 2375449, 4752: 2384447, 4755: 2384631, 4761: 2384825}
[2025-10-13 01:54:35] 2025-10-13 05:54:00,380 | INFO     | --------------------------------------------------
[2025-10-13 01:54:35] 2025-10-13 05:54:00,380 | INFO     | 
[2025-10-13 01:54:35] 2025-10-13 05:54:00,380 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-13 01:54:35] 2025-10-13 05:54:00,396 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:54:35] 2025-10-13 05:54:00,397 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:54:35] 2025-10-13 05:54:00,397 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:54:35] 2025-10-13 05:54:00,397 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:54:35] 2025-10-13 05:54:00,397 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:54:35] 2025-10-13 05:54:00,397 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:54:35] 2025-10-13 05:54:00,397 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:54:35] 2025-10-13 05:54:00,397 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:54:35] 2025-10-13 05:54:00,398 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:54:35] 2025-10-13 05:54:00,398 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:54:35] 2025-10-13 05:54:00,398 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:54:35] 2025-10-13 05:54:00,398 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:54:35] 2025-10-13 05:54:00,398 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:54:35] 2025-10-13 05:54:00,398 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:54:35] 2025-10-13 05:54:00,398 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:54:35] 2025-10-13 05:54:00,398 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:54:35] 2025-10-13 05:54:00,399 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:54:35] 2025-10-13 05:54:00,399 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:54:35] 2025-10-13 05:54:00,399 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:54:35] 2025-10-13 05:54:00,399 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:54:35] 2025-10-13 05:54:00,399 | INFO     | job 6840962099 has completed (purged errors)
[2025-10-13 01:54:35] 2025-10-13 05:54:00,399 | INFO     | overall cleanup function is called
[2025-10-13 01:54:35] 2025-10-13 05:54:01,407 | INFO     | --- collectZombieJob: --- 10, [1400993]
[2025-10-13 01:54:35] 2025-10-13 05:54:01,407 | INFO     | zombie collector waiting for pid 1400993
[2025-10-13 01:54:35] 2025-10-13 05:54:01,407 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:54:35] 2025-10-13 05:54:01,408 | INFO     | collected zombie processes
[2025-10-13 01:54:35] 2025-10-13 05:54:01,408 | INFO     | will attempt to kill all subprocesses of pid=1400993
[2025-10-13 01:54:35] 2025-10-13 05:54:01,655 | INFO     | process IDs to be killed: [1400993] (in reverse order)
[2025-10-13 01:54:35] 2025-10-13 05:54:01,722 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:54:35] 2025-10-13 05:54:01,722 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:54:35] 2025-10-13 05:54:01,730 | INFO     | did not find any defunct processes belonging to 1400993
[2025-10-13 01:54:35] 2025-10-13 05:54:01,738 | INFO     | did not find any defunct processes belonging to 1400993
[2025-10-13 01:54:35] 2025-10-13 05:54:01,738 | INFO     | ready for new job
[2025-10-13 01:54:35] 2025-10-13 05:54:01,739 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:54:35] 2025-10-13 05:54:01,740 | INFO     | ***************************************
[2025-10-13 01:54:35] 2025-10-13 05:54:01,740 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:54:35] 2025-10-13 05:54:01,740 | INFO     | ***************************************
[2025-10-13 01:54:35] 2025-10-13 05:54:01,741 | INFO     | 
[2025-10-13 01:54:35] 2025-10-13 05:54:01,755 | INFO     | architecture information:
[2025-10-13 01:54:35] 2025-10-13 05:54:01,755 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:54:35] 2025-10-13 05:54:01,767 | INFO     | cat /etc/os-release:
[2025-10-13 01:54:35] NAME="CentOS Linux"
[2025-10-13 01:54:35] VERSION="7 (Core)"
[2025-10-13 01:54:35] ID="centos"
[2025-10-13 01:54:35] ID_LIKE="rhel fedora"
[2025-10-13 01:54:35] VERSION_ID="7"
[2025-10-13 01:54:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:54:35] ANSI_COLOR="0;31"
[2025-10-13 01:54:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:54:35] HOME_URL="https://www.centos.org/"
[2025-10-13 01:54:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:54:35] 
[2025-10-13 01:54:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:54:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:54:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:54:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:54:35] 
[2025-10-13 01:54:35] 2025-10-13 05:54:01,767 | INFO     | ***************************************
[2025-10-13 01:54:35] 2025-10-13 05:54:02,270 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 01:54:35] 2025-10-13 05:54:02,283 | INFO     | sufficient remaining disk space (74093428736 B)
[2025-10-13 01:54:35] 2025-10-13 05:54:02,283 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:54:35] 2025-10-13 05:54:02,283 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:54:35] 2025-10-13 05:54:02,283 | INFO     | update_server=False
[2025-10-13 01:54:35] 2025-10-13 05:54:02,284 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:54:35] 2025-10-13 05:54:02,284 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:54:35] 2025-10-13 05:54:02,284 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:54:35] 2025-10-13 05:54:02,284 | INFO     | aborting loop
[2025-10-13 01:54:35] 2025-10-13 05:54:02,348 | INFO     | all job control threads have been joined
[2025-10-13 01:54:35] 2025-10-13 05:54:02,849 | INFO     | all data control threads have been joined
[2025-10-13 01:54:35] 2025-10-13 05:54:03,285 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:54:35] 2025-10-13 05:54:03,290 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:54:35] 2025-10-13 05:54:03,353 | INFO     | [job] control thread has finished
[2025-10-13 01:54:35] 2025-10-13 05:54:03,413 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:54:35] 2025-10-13 05:54:03,534 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:54:35] 2025-10-13 05:54:03,751 | INFO     | all payload control threads have been joined
[2025-10-13 01:54:35] 2025-10-13 05:54:03,855 | INFO     | [data] control thread has finished
[2025-10-13 01:54:35] 2025-10-13 05:54:03,865 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:54:35] 2025-10-13 05:54:04,289 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:54:35] 2025-10-13 05:54:04,307 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:54:35] 2025-10-13 05:54:04,366 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:54:35] 2025-10-13 05:54:04,420 | INFO     | [job] validate thread has finished
[2025-10-13 01:54:35] 2025-10-13 05:54:04,543 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:54:35] 2025-10-13 05:54:04,757 | INFO     | [payload] control thread has finished
[2025-10-13 01:54:35] 2025-10-13 05:54:04,893 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:54:35] 2025-10-13 05:54:05,197 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:54:35] 2025-10-13 05:54:05,898 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:54:35] 2025-10-13 05:54:09,203 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:54:35] 2025-10-13 05:54:13,242 | INFO     | job.realtimelogging is not enabled
[2025-10-13 01:54:35] 2025-10-13 05:54:14,248 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:54:35] 2025-10-13 05:54:29,550 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:54:35] 2025-10-13 05:54:30,554 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139944924243776)>', '<ExcThread(monitor, started 139944412550912)>']
[2025-10-13 01:54:35] 2025-10-13 05:54:33,152 | INFO     | PID=1394483 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 01:54:35] 2025-10-13 05:54:33,152 | INFO     | .. there are 4 such processes running
[2025-10-13 01:54:35] 2025-10-13 05:54:33,152 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:54:35] 2025-10-13 05:54:33,153 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:54:35] 2025-10-13 05:54:33,153 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:54:35] 2025-10-13 05:54:33,153 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:54:35] 2025-10-13 05:54:33,153 | INFO     | [monitor] control thread has ended
[2025-10-13 01:54:35] 2025-10-13 05:54:35,579 | INFO     | all workflow threads have been joined
[2025-10-13 01:54:35] 2025-10-13 05:54:35,580 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:54:35] 2025-10-13 05:54:35,580 | INFO     | traces error code: 0
[2025-10-13 01:54:35] 2025-10-13 05:54:35,580 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:54:35] 2025-10-13 05:54:35,696 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:54:35] 2025-10-13 05:54:35,699 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:54:35] 2025-10-13 05:54:35,701 [wrapper] pilotpid: 1394483
[2025-10-13 01:54:35] 2025-10-13 05:54:35,703 [wrapper] Pilot exit status: 0
[2025-10-13 01:54:35] 2025-10-13 05:54:35,712 [wrapper] pandaids: 6840962099
[2025-10-13 01:54:35] 2025-10-13 05:54:35,757 [wrapper] cleanup supervisor_pilot 1575158 1394484
[2025-10-13 01:54:35] 2025-10-13 05:54:35,760 [wrapper] Test setup, not cleaning
[2025-10-13 01:54:35] 2025-10-13 05:54:35,762 [wrapper] apfmon messages muted
[2025-10-13 01:54:35] 2025-10-13 05:54:35,764 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:54:35] 2025-10-13 05:54:35,766 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:54:35]  *** Error codes and diagnostics ***
[2025-10-13 01:54:35]     "exeErrorCode": 0,
[2025-10-13 01:54:35]     "exeErrorDiag": "",
[2025-10-13 01:54:35]     "pilotErrorCode": 0,
[2025-10-13 01:54:35]     "pilotErrorDiag": "",
[2025-10-13 01:54:35]  *** Listing of results directory ***
[2025-10-13 01:54:35] total 412848
[2025-10-13 01:54:35] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 19:11 pilot3.tar.gz
[2025-10-13 01:54:35] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 19:17 queuedata.json
[2025-10-13 01:54:35] -rwx------. 1 boincer umatlas     36292 Oct 12 19:20 runpilot2-wrapper.sh
[2025-10-13 01:54:35] -rw-r--r--. 1 boincer umatlas       100 Oct 13 00:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:54:35] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 00:34 run_atlas
[2025-10-13 01:54:35] -rw-r--r--. 1 boincer umatlas       105 Oct 13 00:34 job.xml
[2025-10-13 01:54:35] -rw-r--r--. 2 boincer umatlas 223472298 Oct 13 00:34 EVNT.46676267._004652.pool.root.1
[2025-10-13 01:54:35] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:34 start_atlas.sh
[2025-10-13 01:54:35] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 00:34 shared
[2025-10-13 01:54:35] -rw-r--r--. 2 boincer umatlas    569682 Oct 13 00:34 input.tar.gz
[2025-10-13 01:54:35] -rw-r--r--. 1 boincer umatlas         0 Oct 13 00:34 boinc_lockfile
[2025-10-13 01:54:35] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 00:34 pandaJob.out
[2025-10-13 01:54:35] -rw-------. 1 boincer umatlas    974365 Oct 13 00:34 agis_schedconf.cvmfs.json
[2025-10-13 01:54:35] -rw-------. 1 boincer umatlas   1560580 Oct 13 00:34 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:54:35] drwx------. 5 boincer umatlas      4096 Oct 13 00:34 pilot3
[2025-10-13 01:54:35] -rw-r--r--. 1 boincer umatlas      6660 Oct 13 01:46 init_data.xml
[2025-10-13 01:54:35] -rw-------. 1 boincer umatlas 193294312 Oct 13 01:53 HITS.46676269._092070.pool.root.1
[2025-10-13 01:54:35] -rw-r--r--. 1 boincer umatlas       529 Oct 13 01:53 boinc_task_state.xml
[2025-10-13 01:54:35] -rw-------. 1 boincer umatlas        95 Oct 13 01:53 pilot_heartbeat.json
[2025-10-13 01:54:35] -rw-------. 1 boincer umatlas      1046 Oct 13 01:53 memory_monitor_summary.json
[2025-10-13 01:54:35] -rw-------. 1 boincer umatlas    341007 Oct 13 01:53 log.46676269._092070.job.log.tgz.1
[2025-10-13 01:54:35] -rw-------. 1 boincer umatlas      7815 Oct 13 01:53 heartbeat.json
[2025-10-13 01:54:35] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 01:54 boinc_mmap_file
[2025-10-13 01:54:35] -rw-r--r--. 1 boincer umatlas        27 Oct 13 01:54 wrapper_checkpoint.txt
[2025-10-13 01:54:35] -rw-------. 1 boincer umatlas      4895 Oct 13 01:54 pilotlog.txt
[2025-10-13 01:54:35] -rw-------. 1 boincer umatlas    706845 Oct 13 01:54 log.46676269._092070.job.log.1
[2025-10-13 01:54:35] -rw-------. 1 boincer umatlas       357 Oct 13 01:54 output.list
[2025-10-13 01:54:35] -rw-r--r--. 1 boincer umatlas       620 Oct 13 01:54 runtime_log
[2025-10-13 01:54:35] -rw-------. 1 boincer umatlas   1064960 Oct 13 01:54 result.tar.gz
[2025-10-13 01:54:35] -rw-------. 1 boincer umatlas       648 Oct 13 01:54 SSeMDmpXKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm41lNDm0EPF0n.diag
[2025-10-13 01:54:35] -rw-r--r--. 1 boincer umatlas      8693 Oct 13 01:54 runtime_log.err
[2025-10-13 01:54:35] -rw-r--r--. 1 boincer umatlas     22078 Oct 13 01:54 stderr.txt
[2025-10-13 01:54:35] HITS file was successfully produced:
[2025-10-13 01:54:35] -rw-------. 1 boincer umatlas 193294312 Oct 13 01:53 shared/HITS.pool.root.1
[2025-10-13 01:54:35]  *** Contents of shared directory: ***
[2025-10-13 01:54:35] total 408620
[2025-10-13 01:54:35] -rw-r--r--. 2 boincer umatlas 223472298 Oct 13 00:34 ATLAS.root_0
[2025-10-13 01:54:35] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:34 start_atlas.sh
[2025-10-13 01:54:35] -rw-r--r--. 2 boincer umatlas    569682 Oct 13 00:34 input.tar.gz
[2025-10-13 01:54:35] -rw-------. 1 boincer umatlas 193294312 Oct 13 01:53 HITS.pool.root.1
[2025-10-13 01:54:35] -rw-------. 1 boincer umatlas   1064960 Oct 13 01:54 result.tar.gz
01:54:37 (1390785): run_atlas exited; CPU time 36034.298812
01:54:37 (1390785): called boinc_finish(0)

</stderr_txt>
]]>

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