Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:37:53 (26425): wrapper (7.7.26015): starting
23:37:53 (26425): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 23:37:53] Arguments: --nthreads 12
[2025-10-12 23:37:53] Threads: 12
[2025-10-12 23:37:53] Checking for CVMFS
[2025-10-12 23:37:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 23:37:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 23:37:53] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 23:37:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 23:37:53] 2.11.2.0 3165 9412 84040 151647 2 56 12465419 20275200 1 130560 0 9218581 99.993 312097 43395 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 23:37:53] CVMFS is ok
[2025-10-12 23:37:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 23:37:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 23:37:53] Further information can be found at the LHC@home message board.
[2025-10-12 23:37:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 23:37:53] Checking for apptainer binary...
[2025-10-12 23:37:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 23:37:53] Running /usr/bin/apptainer --version
[2025-10-12 23:37:53] apptainer version 1.3.2-1.el7
[2025-10-12 23:37:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 23:37:55] c-115-40.aglt2.org
[2025-10-12 23:37:55] apptainer works
[2025-10-12 23:37:55] Set ATHENA_PROC_NUMBER=12
[2025-10-12 23:37:55] Set ATHENA_CORE_NUMBER=12
[2025-10-12 23:37:55] Starting ATLAS job with PandaID=6840853876
[2025-10-12 23:37:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 00:44:22]  *** The last 200 lines of the pilot log: ***
[2025-10-13 00:44:22]  replicas=None
[2025-10-13 00:44:22]  scope=mc23_13p6TeV
[2025-10-13 00:44:22]  status=None
[2025-10-13 00:44:22]  status_code=0
[2025-10-13 00:44:22]  storage_token=
[2025-10-13 00:44:22]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840853876/log.46676269._091499.job.log.tgz.1
[2025-10-13 00:44:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8a/a4/log.46676269._091499.job.log.tgz.1
[2025-10-13 00:44:22]  workdir=None
[2025-10-13 00:44:22] ]
[2025-10-13 00:44:22] 2025-10-13 04:43:19,121 | INFO     | transferring file log.46676269._091499.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840853876/log.46676269._091499.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 00:44:22] 2025-10-13 04:43:19,122 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840853876/log.46676269._091499.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._091499.job
[2025-10-13 00:44:22] 2025-10-13 04:43:19,143 | INFO     | adding to output.list: log.46676269._091499.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8a/a4/log.46676269._091499.job.log.tg
[2025-10-13 00:44:22] 2025-10-13 04:43:19,144 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 00:44:22] 2025-10-13 04:43:19,144 | INFO     | summary of transferred files:
[2025-10-13 00:44:22] 2025-10-13 04:43:19,144 | INFO     |  -- lfn=log.46676269._091499.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 00:44:22] 2025-10-13 04:43:19,144 | INFO     | stage-out finished correctly
[2025-10-13 00:44:22] 2025-10-13 04:43:19,675 | INFO     | time since job start (3910s) is within the limit (172800.0s)
[2025-10-13 00:44:22] 2025-10-13 04:43:20,628 | INFO     | monitor loop #294: job 0:6840853876 is in state 'finished'
[2025-10-13 00:44:22] 2025-10-13 04:43:20,628 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 00:44:22] 2025-10-13 04:43:21,385 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 00:44:22] 2025-10-13 04:43:21,680 | INFO     | time since job start (3912s) is within the limit (172800.0s)
[2025-10-13 00:44:22] 2025-10-13 04:43:22,042 | INFO     | job 6840853876 has state=finished
[2025-10-13 00:44:22] 2025-10-13 04:43:22,042 | INFO     | preparing for final server update for job 6840853876 in state='finished'
[2025-10-13 00:44:22] 2025-10-13 04:43:22,043 | INFO     | this job has now completed (state=finished)
[2025-10-13 00:44:22] 2025-10-13 04:43:22,043 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 00:44:22] 2025-10-13 04:43:22,043 | INFO     | log transfer has been attempted: DONE
[2025-10-13 00:44:22] 2025-10-13 04:43:22,043 | INFO     | job 6840853876 has finished - writing final server update
[2025-10-13 00:44:22] 2025-10-13 04:43:22,044 | INFO     | total number of processed events: 400 (read)
[2025-10-13 00:44:22] 2025-10-13 04:43:22,044 | INFO     | executing command: lscpu
[2025-10-13 00:44:22] 2025-10-13 04:43:22,069 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 00:44:22] 2025-10-13 04:43:23,131 | INFO     | monitor loop #295: job 0:6840853876 is in state 'finished'
[2025-10-13 00:44:22] 2025-10-13 04:43:23,132 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 00:44:22] 2025-10-13 04:43:23,685 | INFO     | time since job start (3914s) is within the limit (172800.0s)
[2025-10-13 00:44:22] 2025-10-13 04:43:25,635 | INFO     | monitor loop #296: job 0:6840853876 is in state 'finished'
[2025-10-13 00:44:22] 2025-10-13 04:43:25,635 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 00:44:22] 2025-10-13 04:43:25,690 | INFO     | time since job start (3916s) is within the limit (172800.0s)
[2025-10-13 00:44:22] 2025-10-13 04:43:26,580 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 00:44:22] 2025-10-13 04:43:26,584 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-10-13 00:44:22] 2025-10-13 04:43:26,585 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840853876/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 00:44:22] 2025-10-13 04:43:26,586 | INFO     | extracted standard info from prmon json
[2025-10-13 00:44:22] 2025-10-13 04:43:26,586 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 00:44:22] 2025-10-13 04:43:26,586 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 00:44:22] 2025-10-13 04:43:26,586 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 00:44:22] 2025-10-13 04:43:26,586 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 00:44:22] 2025-10-13 04:43:26,588 | INFO     | fitting pss+swap vs Time
[2025-10-13 00:44:22] 2025-10-13 04:43:26,588 | INFO     | sum of square deviations: 57407588.0
[2025-10-13 00:44:22] 2025-10-13 04:43:26,588 | INFO     | sum of deviations: -6347768092.0
[2025-10-13 00:44:22] 2025-10-13 04:43:26,588 | INFO     | mean x: 1760328730.0
[2025-10-13 00:44:22] 2025-10-13 04:43:26,588 | INFO     | mean y: 2836063.98245614
[2025-10-13 00:44:22] 2025-10-13 04:43:26,588 | INFO     | -- intersect: 194648856442.41888
[2025-10-13 00:44:22] 2025-10-13 04:43:26,589 | INFO     | intersect: 194648856442.41888
[2025-10-13 00:44:22] 2025-10-13 04:43:26,589 | INFO     | chi2: 0.04743548495854623
[2025-10-13 00:44:22] 2025-10-13 04:43:26,589 | INFO     | -- intersect: 194648856442.41888
[2025-10-13 00:44:22] 2025-10-13 04:43:26,589 | INFO     | current memory leak: -110.57 B/s (using 57 data points, chi2=0.05)
[2025-10-13 00:44:22] 2025-10-13 04:43:26,589 | INFO     | could have reported an average CPU frequency of 2161 MHz (6 samples)
[2025-10-13 00:44:22] 2025-10-13 04:43:26,589 | INFO     | ..............................
[2025-10-13 00:44:22] 2025-10-13 04:43:26,589 | INFO     | . Timing measurements:
[2025-10-13 00:44:22] 2025-10-13 04:43:26,590 | INFO     | . get job = 0 s
[2025-10-13 00:44:22] 2025-10-13 04:43:26,590 | INFO     | . initial setup = 2 s
[2025-10-13 00:44:22] 2025-10-13 04:43:26,590 | INFO     | . payload setup = 6 s
[2025-10-13 00:44:22] 2025-10-13 04:43:26,590 | INFO     | . stage-in = 0 s
[2025-10-13 00:44:22] 2025-10-13 04:43:26,590 | INFO     | . payload execution = 3882 s
[2025-10-13 00:44:22] 2025-10-13 04:43:26,590 | INFO     | . stage-out = 0 s
[2025-10-13 00:44:22] 2025-10-13 04:43:26,590 | INFO     | . log creation = 0 s
[2025-10-13 00:44:22] 2025-10-13 04:43:26,590 | INFO     | ..............................
[2025-10-13 00:44:22] 2025-10-13 04:43:26,665 | INFO     | 
[2025-10-13 00:44:22] 2025-10-13 04:43:26,665 | INFO     | job summary report
[2025-10-13 00:44:22] 2025-10-13 04:43:26,665 | INFO     | --------------------------------------------------
[2025-10-13 00:44:22] 2025-10-13 04:43:26,666 | INFO     | PanDA job id: 6840853876
[2025-10-13 00:44:22] 2025-10-13 04:43:26,666 | INFO     | task id: 46676269
[2025-10-13 00:44:22] 2025-10-13 04:43:26,666 | INFO     | errors: (none)
[2025-10-13 00:44:22] 2025-10-13 04:43:26,666 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 00:44:22] 2025-10-13 04:43:26,666 | INFO     | pilot state: finished 
[2025-10-13 00:44:22] 2025-10-13 04:43:26,666 | INFO     | transexitcode: 0
[2025-10-13 00:44:22] 2025-10-13 04:43:26,667 | INFO     | exeerrorcode: 0
[2025-10-13 00:44:22] 2025-10-13 04:43:26,667 | INFO     | exeerrordiag: 
[2025-10-13 00:44:22] 2025-10-13 04:43:26,667 | INFO     | exitcode: 0
[2025-10-13 00:44:22] 2025-10-13 04:43:26,667 | INFO     | exitmsg: OK
[2025-10-13 00:44:22] 2025-10-13 04:43:26,667 | INFO     | cpuconsumptiontime: 41598 s
[2025-10-13 00:44:22] 2025-10-13 04:43:26,667 | INFO     | nevents: 400
[2025-10-13 00:44:22] 2025-10-13 04:43:26,667 | INFO     | neventsw: 0
[2025-10-13 00:44:22] 2025-10-13 04:43:26,668 | INFO     | pid: 4335
[2025-10-13 00:44:22] 2025-10-13 04:43:26,668 | INFO     | pgrp: 4335
[2025-10-13 00:44:22] 2025-10-13 04:43:26,668 | INFO     | corecount: 12
[2025-10-13 00:44:22] 2025-10-13 04:43:26,668 | INFO     | event service: False
[2025-10-13 00:44:22] 2025-10-13 04:43:26,668 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 3892: 2374960, 3893: 2374959, 3894: 2384013, 3896: 2384197, 3901: 2384391}
[2025-10-13 00:44:22] 2025-10-13 04:43:26,668 | INFO     | --------------------------------------------------
[2025-10-13 00:44:22] 2025-10-13 04:43:26,668 | INFO     | 
[2025-10-13 00:44:22] 2025-10-13 04:43:26,669 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 00:44:22] 2025-10-13 04:43:26,693 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 00:44:22] 2025-10-13 04:43:26,693 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 00:44:22] 2025-10-13 04:43:26,693 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 00:44:22] 2025-10-13 04:43:26,693 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 00:44:22] 2025-10-13 04:43:26,693 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 00:44:22] 2025-10-13 04:43:26,694 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 00:44:22] 2025-10-13 04:43:26,694 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 00:44:22] 2025-10-13 04:43:26,694 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 00:44:22] 2025-10-13 04:43:26,694 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 00:44:22] 2025-10-13 04:43:26,694 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 00:44:22] 2025-10-13 04:43:26,695 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 00:44:22] 2025-10-13 04:43:26,695 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 00:44:22] 2025-10-13 04:43:26,695 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 00:44:22] 2025-10-13 04:43:26,695 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 00:44:22] 2025-10-13 04:43:26,695 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 00:44:22] 2025-10-13 04:43:26,696 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 00:44:22] 2025-10-13 04:43:26,696 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 00:44:22] 2025-10-13 04:43:26,696 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 00:44:22] 2025-10-13 04:43:26,696 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 00:44:22] 2025-10-13 04:43:26,696 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 00:44:22] 2025-10-13 04:43:26,696 | INFO     | job 6840853876 has completed (purged errors)
[2025-10-13 00:44:22] 2025-10-13 04:43:26,697 | INFO     | overall cleanup function is called
[2025-10-13 00:44:22] 2025-10-13 04:43:27,705 | INFO     | --- collectZombieJob: --- 10, [4335]
[2025-10-13 00:44:22] 2025-10-13 04:43:27,705 | INFO     | zombie collector waiting for pid 4335
[2025-10-13 00:44:22] 2025-10-13 04:43:27,705 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 00:44:22] 2025-10-13 04:43:27,705 | INFO     | collected zombie processes
[2025-10-13 00:44:22] 2025-10-13 04:43:27,706 | INFO     | will attempt to kill all subprocesses of pid=4335
[2025-10-13 00:44:22] 2025-10-13 04:43:27,793 | INFO     | process IDs to be killed: [4335] (in reverse order)
[2025-10-13 00:44:22] 2025-10-13 04:43:27,841 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 00:44:22] 2025-10-13 04:43:27,842 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 00:44:22] 2025-10-13 04:43:27,844 | INFO     | did not find any defunct processes belonging to 4335
[2025-10-13 00:44:22] 2025-10-13 04:43:27,846 | INFO     | did not find any defunct processes belonging to 4335
[2025-10-13 00:44:22] 2025-10-13 04:43:27,846 | INFO     | ready for new job
[2025-10-13 00:44:22] 2025-10-13 04:43:27,846 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 00:44:22] 2025-10-13 04:43:27,847 | INFO     | ***************************************
[2025-10-13 00:44:22] 2025-10-13 04:43:27,848 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 00:44:22] 2025-10-13 04:43:27,848 | INFO     | ***************************************
[2025-10-13 00:44:22] 2025-10-13 04:43:27,848 | INFO     | 
[2025-10-13 00:44:22] 2025-10-13 04:43:27,848 | INFO     | architecture information:
[2025-10-13 00:44:22] 2025-10-13 04:43:27,849 | INFO     | executing command: cat /etc/os-release
[2025-10-13 00:44:22] 2025-10-13 04:43:27,864 | INFO     | cat /etc/os-release:
[2025-10-13 00:44:22] NAME="CentOS Linux"
[2025-10-13 00:44:22] VERSION="7 (Core)"
[2025-10-13 00:44:22] ID="centos"
[2025-10-13 00:44:22] ID_LIKE="rhel fedora"
[2025-10-13 00:44:22] VERSION_ID="7"
[2025-10-13 00:44:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 00:44:22] ANSI_COLOR="0;31"
[2025-10-13 00:44:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 00:44:22] HOME_URL="https://www.centos.org/"
[2025-10-13 00:44:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 00:44:22] 
[2025-10-13 00:44:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 00:44:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 00:44:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 00:44:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 00:44:22] 
[2025-10-13 00:44:22] 2025-10-13 04:43:27,865 | INFO     | ***************************************
[2025-10-13 00:44:22] 2025-10-13 04:43:28,368 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 00:44:22] 2025-10-13 04:43:28,385 | INFO     | sufficient remaining disk space (18707644416 B)
[2025-10-13 00:44:22] 2025-10-13 04:43:28,386 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 00:44:22] 2025-10-13 04:43:28,386 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 00:44:22] 2025-10-13 04:43:28,386 | INFO     | update_server=False
[2025-10-13 00:44:22] 2025-10-13 04:43:28,386 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 00:44:22] 2025-10-13 04:43:28,387 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 00:44:22] 2025-10-13 04:43:28,387 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:44:22] 2025-10-13 04:43:29,148 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:44:22] 2025-10-13 04:43:29,159 | INFO     | aborting loop
[2025-10-13 00:44:22] 2025-10-13 04:43:29,177 | INFO     | all payload control threads have been joined
[2025-10-13 00:44:22] 2025-10-13 04:43:29,310 | INFO     | all job control threads have been joined
[2025-10-13 00:44:22] 2025-10-13 04:43:29,361 | INFO     | all data control threads have been joined
[2025-10-13 00:44:22] 2025-10-13 04:43:29,391 | INFO     | [job] retrieve thread has finished
[2025-10-13 00:44:22] 2025-10-13 04:43:29,393 | INFO     | [job] queue monitor thread has finished
[2025-10-13 00:44:22] 2025-10-13 04:43:29,474 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 00:44:22] 2025-10-13 04:43:29,689 | INFO     | [job] validate thread has finished
[2025-10-13 00:44:22] 2025-10-13 04:43:29,737 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 00:44:22] 2025-10-13 04:43:30,029 | INFO     | [payload] failed_post thread has finished
[2025-10-13 00:44:22] 2025-10-13 04:43:30,088 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 00:44:22] 2025-10-13 04:43:30,165 | INFO     | [job] job monitor thread has finished
[2025-10-13 00:44:22] 2025-10-13 04:43:30,182 | INFO     | [payload] control thread has finished
[2025-10-13 00:44:22] 2025-10-13 04:43:30,316 | INFO     | [job] control thread has finished
[2025-10-13 00:44:22] 2025-10-13 04:43:30,330 | INFO     | [data] copytool_in thread has finished
[2025-10-13 00:44:22] 2025-10-13 04:43:30,343 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 00:44:22] 2025-10-13 04:43:30,366 | INFO     | [data] control thread has finished
[2025-10-13 00:44:22] 2025-10-13 04:43:30,652 | INFO     | [payload] validate_post thread has finished
[2025-10-13 00:44:22] 2025-10-13 04:43:31,743 | INFO     | [data] copytool_out thread has finished
[2025-10-13 00:44:22] 2025-10-13 04:43:32,393 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 00:44:22] 2025-10-13 04:43:38,739 | INFO     | job.realtimelogging is not enabled
[2025-10-13 00:44:22] 2025-10-13 04:43:39,745 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 00:44:22] 2025-10-13 04:43:58,874 | INFO     | PID=30135 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 00:44:22] 2025-10-13 04:43:58,874 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 00:44:22] 2025-10-13 04:43:58,874 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 00:44:22] 2025-10-13 04:43:58,874 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 00:44:22] 2025-10-13 04:44:15,083 | INFO     | [monitor] cgroup control has ended
[2025-10-13 00:44:22] 2025-10-13 04:44:17,169 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140123201943360)>', '<ExcThread(monitor, started 140122594977536)>']
[2025-10-13 00:44:22] 2025-10-13 04:44:17,952 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 00:44:22] 2025-10-13 04:44:17,952 | INFO     | [monitor] control thread has ended
[2025-10-13 00:44:22] 2025-10-13 04:44:22,208 | INFO     | all workflow threads have been joined
[2025-10-13 00:44:22] 2025-10-13 04:44:22,208 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 00:44:22] 2025-10-13 04:44:22,220 | INFO     | traces error code: 0
[2025-10-13 00:44:22] 2025-10-13 04:44:22,221 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 00:44:22] 2025-10-13 04:44:22,303 [wrapper] ==== pilot stdout END ====
[2025-10-13 00:44:22] 2025-10-13 04:44:22,306 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 00:44:22] 2025-10-13 04:44:22,309 [wrapper] pilotpid: 30135
[2025-10-13 00:44:22] 2025-10-13 04:44:22,313 [wrapper] Pilot exit status: 0
[2025-10-13 00:44:22] 2025-10-13 04:44:22,327 [wrapper] pandaids: 6840853876
[2025-10-13 00:44:22] 2025-10-13 04:44:22,372 [wrapper] cleanup supervisor_pilot  2312 30136
[2025-10-13 00:44:22] 2025-10-13 04:44:22,376 [wrapper] Test setup, not cleaning
[2025-10-13 00:44:22] 2025-10-13 04:44:22,380 [wrapper] apfmon messages muted
[2025-10-13 00:44:22] 2025-10-13 04:44:22,384 [wrapper] ==== wrapper stdout END ====
[2025-10-13 00:44:22] 2025-10-13 04:44:22,388 [wrapper] ==== wrapper stderr END ====
[2025-10-13 00:44:22]  *** Error codes and diagnostics ***
[2025-10-13 00:44:22]     "exeErrorCode": 0,
[2025-10-13 00:44:22]     "exeErrorDiag": "",
[2025-10-13 00:44:22]     "pilotErrorCode": 0,
[2025-10-13 00:44:22]     "pilotErrorDiag": "",
[2025-10-13 00:44:22]  *** Listing of results directory ***
[2025-10-13 00:44:22] total 408100
[2025-10-13 00:44:22] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-13 00:44:22] -rwx------ 1 boincer umatlas     36292 Oct 12 18:47 runpilot2-wrapper.sh
[2025-10-13 00:44:22] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 18:47 queuedata.json
[2025-10-13 00:44:22] -rw-r--r-- 1 boincer umatlas       100 Oct 12 23:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 00:44:22] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 23:37 run_atlas
[2025-10-13 00:44:22] -rw-r--r-- 1 boincer umatlas       105 Oct 12 23:37 job.xml
[2025-10-13 00:44:22] -rw-r--r-- 2 boincer umatlas 221097303 Oct 12 23:37 EVNT.46676267._004631.pool.root.1
[2025-10-13 00:44:22] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 23:37 start_atlas.sh
[2025-10-13 00:44:22] drwxrwx--x 2 boincer umatlas      4096 Oct 12 23:37 shared
[2025-10-13 00:44:22] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 23:37 input.tar.gz
[2025-10-13 00:44:22] -rw-r--r-- 1 boincer umatlas         0 Oct 12 23:37 boinc_lockfile
[2025-10-13 00:44:22] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 23:37 pandaJob.out
[2025-10-13 00:44:22] -rw------- 1 boincer umatlas    974373 Oct 12 23:38 agis_schedconf.cvmfs.json
[2025-10-13 00:44:22] -rw------- 1 boincer umatlas   1560580 Oct 12 23:38 agis_ddmendpoints.agis.ALL.json
[2025-10-13 00:44:22] drwx------ 5 boincer umatlas      4096 Oct 12 23:38 pilot3
[2025-10-13 00:44:22] -rw-r--r-- 1 boincer umatlas      5952 Oct 13 00:40 init_data.xml
[2025-10-13 00:44:22] -rw------- 1 boincer umatlas 190968619 Oct 13 00:42 HITS.46676269._091499.pool.root.1
[2025-10-13 00:44:22] -rw-r--r-- 1 boincer umatlas       530 Oct 13 00:42 boinc_task_state.xml
[2025-10-13 00:44:22] -rw------- 1 boincer umatlas      1050 Oct 13 00:43 memory_monitor_summary.json
[2025-10-13 00:44:22] -rw------- 1 boincer umatlas    386743 Oct 13 00:43 log.46676269._091499.job.log.tgz.1
[2025-10-13 00:44:22] -rw------- 1 boincer umatlas      7858 Oct 13 00:43 heartbeat.json
[2025-10-13 00:44:22] -rw------- 1 boincer umatlas        95 Oct 13 00:43 pilot_heartbeat.json
[2025-10-13 00:44:22] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 00:44 boinc_mmap_file
[2025-10-13 00:44:22] -rw-r--r-- 1 boincer umatlas        27 Oct 13 00:44 wrapper_checkpoint.txt
[2025-10-13 00:44:22] -rw------- 1 boincer umatlas      4818 Oct 13 00:44 pilotlog.txt
[2025-10-13 00:44:22] -rw------- 1 boincer umatlas    576946 Oct 13 00:44 log.46676269._091499.job.log.1
[2025-10-13 00:44:22] -rw------- 1 boincer umatlas       357 Oct 13 00:44 output.list
[2025-10-13 00:44:22] -rw-r--r-- 1 boincer umatlas       620 Oct 13 00:44 runtime_log
[2025-10-13 00:44:22] -rw------- 1 boincer umatlas    983040 Oct 13 00:44 result.tar.gz
[2025-10-13 00:44:22] -rw-r--r-- 1 boincer umatlas      8705 Oct 13 00:44 runtime_log.err
[2025-10-13 00:44:22] -rw------- 1 boincer umatlas       659 Oct 13 00:44 IZqNDmO1JS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmulNDm4FXdDm.diag
[2025-10-13 00:44:22] -rw-r--r-- 1 boincer umatlas     21817 Oct 13 00:44 stderr.txt
[2025-10-13 00:44:22] HITS file was successfully produced:
[2025-10-13 00:44:22] -rw------- 1 boincer umatlas 190968619 Oct 13 00:42 shared/HITS.pool.root.1
[2025-10-13 00:44:22]  *** Contents of shared directory: ***
[2025-10-13 00:44:22] total 403956
[2025-10-13 00:44:22] -rw-r--r-- 2 boincer umatlas 221097303 Oct 12 23:37 ATLAS.root_0
[2025-10-13 00:44:22] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 23:37 start_atlas.sh
[2025-10-13 00:44:22] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 23:37 input.tar.gz
[2025-10-13 00:44:22] -rw------- 1 boincer umatlas 190968619 Oct 13 00:42 HITS.pool.root.1
[2025-10-13 00:44:22] -rw------- 1 boincer umatlas    983040 Oct 13 00:44 result.tar.gz
00:44:24 (26425): run_atlas exited; CPU time 41592.971443
00:44:24 (26425): called boinc_finish(0)

</stderr_txt>
]]>

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