Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:02:43 (3912494): wrapper (7.7.26015): starting
18:02:43 (3912494): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 18:02:43] Arguments: --nthreads 12
[2025-10-13 18:02:43] Threads: 12
[2025-10-13 18:02:43] Checking for CVMFS
[2025-10-13 18:02:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 18:02:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 18:02:43] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 18:02:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 18:02:43] 2.13.2.0 8705 34928 120720 151666 0 188 40563375 46080000 922 130560 0 63026086 99.997 1173742 794 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-13 18:02:43] CVMFS is ok
[2025-10-13 18:02:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 18:02:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 18:02:43] Further information can be found at the LHC@home message board.
[2025-10-13 18:02:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 18:02:43] Checking for apptainer binary...
[2025-10-13 18:02:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 18:02:43] Running /usr/bin/apptainer --version
[2025-10-13 18:02:43] apptainer version 1.4.2-1.el9
[2025-10-13 18:02:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 18:02:43] gpu01.farm.particle.cz
[2025-10-13 18:02:43] apptainer works
[2025-10-13 18:02:43] Set ATHENA_PROC_NUMBER=12
[2025-10-13 18:02:43] Set ATHENA_CORE_NUMBER=12
[2025-10-13 18:02:43] Starting ATLAS job with PandaID=6840853984
[2025-10-13 18:02:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 18:43:21]  *** The last 200 lines of the pilot log: ***
[2025-10-13 18:43:21]  replicas=None
[2025-10-13 18:43:21]  scope=mc23_13p6TeV
[2025-10-13 18:43:21]  status=None
[2025-10-13 18:43:21]  status_code=0
[2025-10-13 18:43:21]  storage_token=
[2025-10-13 18:43:21]  surl=/var/lib/boinc/slots/2/PanDA_Pilot-6840853984/log.46676269._091554.job.log.tgz.1
[2025-10-13 18:43:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c0/c2/log.46676269._091554.job.log.tgz.1
[2025-10-13 18:43:21]  workdir=None
[2025-10-13 18:43:21] ]
[2025-10-13 18:43:21] 2025-10-13 16:42:43,355 | INFO     | transferring file log.46676269._091554.job.log.tgz.1 from /var/lib/boinc/slots/2/PanDA_Pilot-6840853984/log.46676269._091554.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-13 18:43:21] 2025-10-13 16:42:43,355 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/2/PanDA_Pilot-6840853984/log.46676269._091554.job.log.tgz.1 /var/lib/boinc/slots/2/log.46676269._091554.job
[2025-10-13 18:43:21] 2025-10-13 16:42:43,369 | INFO     | adding to output.list: log.46676269._091554.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c0/c2/log.46676269._091554.job.log.tg
[2025-10-13 18:43:21] 2025-10-13 16:42:43,369 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 18:43:21] 2025-10-13 16:42:43,369 | INFO     | summary of transferred files:
[2025-10-13 18:43:21] 2025-10-13 16:42:43,369 | INFO     |  -- lfn=log.46676269._091554.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 18:43:21] 2025-10-13 16:42:43,370 | INFO     | stage-out finished correctly
[2025-10-13 18:43:21] 2025-10-13 16:42:43,695 | INFO     | time since job start (2392s) is within the limit (172800.0s)
[2025-10-13 18:43:21] 2025-10-13 16:42:45,055 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 18:43:21] 2025-10-13 16:42:45,333 | INFO     | job 6840853984 has state=finished
[2025-10-13 18:43:21] 2025-10-13 16:42:45,333 | INFO     | preparing for final server update for job 6840853984 in state='finished'
[2025-10-13 18:43:21] 2025-10-13 16:42:45,360 | INFO     | monitor loop #186: job 0:6840853984 is in state 'finished'
[2025-10-13 18:43:21] 2025-10-13 16:42:45,361 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:43:21] 2025-10-13 16:42:45,701 | INFO     | time since job start (2394s) is within the limit (172800.0s)
[2025-10-13 18:43:21] 2025-10-13 16:42:45,785 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-13 18:43:21] 2025-10-13 16:42:45,785 | INFO     | this job has now completed (state=finished)
[2025-10-13 18:43:21] 2025-10-13 16:42:45,785 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 18:43:21] 2025-10-13 16:42:45,785 | INFO     | log transfer has been attempted: DONE
[2025-10-13 18:43:21] 2025-10-13 16:42:45,785 | INFO     | job 6840853984 has finished - writing final server update
[2025-10-13 18:43:21] 2025-10-13 16:42:45,786 | INFO     | total number of processed events: 400 (read)
[2025-10-13 18:43:21] 2025-10-13 16:42:45,786 | INFO     | executing command: lscpu
[2025-10-13 18:43:21] 2025-10-13 16:42:45,811 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 18:43:21] 2025-10-13 16:42:47,706 | INFO     | time since job start (2396s) is within the limit (172800.0s)
[2025-10-13 18:43:21] 2025-10-13 16:42:47,863 | INFO     | monitor loop #187: job 0:6840853984 is in state 'finished'
[2025-10-13 18:43:21] 2025-10-13 16:42:47,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:43:21] 2025-10-13 16:42:48,477 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 18:43:21] 2025-10-13 16:42:48,480 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3231.6348750000006
[2025-10-13 18:43:21] 2025-10-13 16:42:48,484 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6840853984/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 18:43:21] 2025-10-13 16:42:48,485 | INFO     | extracted standard info from prmon json
[2025-10-13 18:43:21] 2025-10-13 16:42:48,485 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 18:43:21] 2025-10-13 16:42:48,485 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 18:43:21] 2025-10-13 16:42:48,485 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 18:43:21] 2025-10-13 16:42:48,485 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 18:43:21] 2025-10-13 16:42:48,486 | INFO     | fitting pss+swap vs Time
[2025-10-13 18:43:21] 2025-10-13 16:42:48,486 | INFO     | sum of square deviations: 10150888.0
[2025-10-13 18:43:21] 2025-10-13 16:42:48,486 | INFO     | sum of deviations: -927345607.0
[2025-10-13 18:43:21] 2025-10-13 16:42:48,486 | INFO     | mean x: 1760372643.5
[2025-10-13 18:43:21] 2025-10-13 16:42:48,486 | INFO     | mean y: 2759162.0
[2025-10-13 18:43:21] 2025-10-13 16:42:48,486 | INFO     | -- intersect: 160823550173.8506
[2025-10-13 18:43:21] 2025-10-13 16:42:48,486 | INFO     | intersect: 160823550173.8506
[2025-10-13 18:43:21] 2025-10-13 16:42:48,486 | INFO     | chi2: 0.014390599744856201
[2025-10-13 18:43:21] 2025-10-13 16:42:48,486 | INFO     | -- intersect: 160823550173.8506
[2025-10-13 18:43:21] 2025-10-13 16:42:48,486 | INFO     | current memory leak: -91.36 B/s (using 32 data points, chi2=0.01)
[2025-10-13 18:43:21] 2025-10-13 16:42:48,486 | INFO     | could have reported an average CPU frequency of 3230 MHz (5 samples)
[2025-10-13 18:43:21] 2025-10-13 16:42:48,487 | INFO     | ..............................
[2025-10-13 18:43:21] 2025-10-13 16:42:48,487 | INFO     | . Timing measurements:
[2025-10-13 18:43:21] 2025-10-13 16:42:48,487 | INFO     | . get job = 0 s
[2025-10-13 18:43:21] 2025-10-13 16:42:48,487 | INFO     | . initial setup = 2 s
[2025-10-13 18:43:21] 2025-10-13 16:42:48,487 | INFO     | . payload setup = 3 s
[2025-10-13 18:43:21] 2025-10-13 16:42:48,487 | INFO     | . stage-in = 0 s
[2025-10-13 18:43:21] 2025-10-13 16:42:48,487 | INFO     | . payload execution = 2369 s
[2025-10-13 18:43:21] 2025-10-13 16:42:48,487 | INFO     | . stage-out = 0 s
[2025-10-13 18:43:21] 2025-10-13 16:42:48,487 | INFO     | . log creation = 0 s
[2025-10-13 18:43:21] 2025-10-13 16:42:48,487 | INFO     | ..............................
[2025-10-13 18:43:21] 2025-10-13 16:42:48,661 | INFO     | 
[2025-10-13 18:43:21] 2025-10-13 16:42:48,661 | INFO     | job summary report
[2025-10-13 18:43:21] 2025-10-13 16:42:48,661 | INFO     | --------------------------------------------------
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | PanDA job id: 6840853984
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | task id: 46676269
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | errors: (none)
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | pilot state: finished 
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | transexitcode: 0
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | exeerrorcode: 0
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | exeerrordiag: 
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | exitcode: 0
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | exitmsg: OK
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | cpuconsumptiontime: 25793 s
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | nevents: 400
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | neventsw: 0
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | pid: 3923039
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | pgrp: 3923039
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | corecount: 12
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | event service: False
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | sizes: {0: 2348750, 3: 2349012, 11: 2349040, 2377: 2374215, 2378: 2383213, 2380: 2383269, 2383: 2383623}
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | --------------------------------------------------
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | 
[2025-10-13 18:43:21] 2025-10-13 16:42:48,662 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-10-13 18:43:21] 2025-10-13 16:42:48,676 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 18:43:21] 2025-10-13 16:42:48,676 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 18:43:21] 2025-10-13 16:42:48,676 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 18:43:21] 2025-10-13 16:42:48,676 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 18:43:21] 2025-10-13 16:42:48,676 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 18:43:21] 2025-10-13 16:42:48,677 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 18:43:21] 2025-10-13 16:42:48,677 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 18:43:21] 2025-10-13 16:42:48,677 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 18:43:21] 2025-10-13 16:42:48,677 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 18:43:21] 2025-10-13 16:42:48,677 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 18:43:21] 2025-10-13 16:42:48,677 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 18:43:21] 2025-10-13 16:42:48,677 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 18:43:21] 2025-10-13 16:42:48,677 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 18:43:21] 2025-10-13 16:42:48,677 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 18:43:21] 2025-10-13 16:42:48,677 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 18:43:21] 2025-10-13 16:42:48,677 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 18:43:21] 2025-10-13 16:42:48,677 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 18:43:21] 2025-10-13 16:42:48,677 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 18:43:21] 2025-10-13 16:42:48,678 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 18:43:21] 2025-10-13 16:42:48,678 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 18:43:21] 2025-10-13 16:42:48,678 | INFO     | job 6840853984 has completed (purged errors)
[2025-10-13 18:43:21] 2025-10-13 16:42:48,678 | INFO     | overall cleanup function is called
[2025-10-13 18:43:21] 2025-10-13 16:42:49,686 | INFO     | --- collectZombieJob: --- 10, [3923039]
[2025-10-13 18:43:21] 2025-10-13 16:42:49,686 | INFO     | zombie collector waiting for pid 3923039
[2025-10-13 18:43:21] 2025-10-13 16:42:49,686 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 18:43:21] 2025-10-13 16:42:49,687 | INFO     | collected zombie processes
[2025-10-13 18:43:21] 2025-10-13 16:42:49,687 | INFO     | will attempt to kill all subprocesses of pid=3923039
[2025-10-13 18:43:21] 2025-10-13 16:42:49,778 | INFO     | process IDs to be killed: [3923039] (in reverse order)
[2025-10-13 18:43:21] 2025-10-13 16:42:49,817 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 18:43:21] 2025-10-13 16:42:49,817 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 18:43:21] 2025-10-13 16:42:49,821 | INFO     | did not find any defunct processes belonging to 3923039
[2025-10-13 18:43:21] 2025-10-13 16:42:49,823 | INFO     | did not find any defunct processes belonging to 3923039
[2025-10-13 18:43:21] 2025-10-13 16:42:49,823 | INFO     | ready for new job
[2025-10-13 18:43:21] 2025-10-13 16:42:49,823 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 18:43:21] 2025-10-13 16:42:49,824 | INFO     | ***************************************
[2025-10-13 18:43:21] 2025-10-13 16:42:49,824 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 18:43:21] 2025-10-13 16:42:49,824 | INFO     | ***************************************
[2025-10-13 18:43:21] 2025-10-13 16:42:49,824 | INFO     | 
[2025-10-13 18:43:21] 2025-10-13 16:42:49,826 | INFO     | architecture information:
[2025-10-13 18:43:21] 2025-10-13 16:42:49,826 | INFO     | executing command: cat /etc/os-release
[2025-10-13 18:43:21] 2025-10-13 16:42:49,838 | INFO     | cat /etc/os-release:
[2025-10-13 18:43:21] NAME="CentOS Linux"
[2025-10-13 18:43:21] VERSION="7 (Core)"
[2025-10-13 18:43:21] ID="centos"
[2025-10-13 18:43:21] ID_LIKE="rhel fedora"
[2025-10-13 18:43:21] VERSION_ID="7"
[2025-10-13 18:43:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 18:43:21] ANSI_COLOR="0;31"
[2025-10-13 18:43:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 18:43:21] HOME_URL="https://www.centos.org/"
[2025-10-13 18:43:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 18:43:21] 
[2025-10-13 18:43:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 18:43:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 18:43:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 18:43:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 18:43:21] 
[2025-10-13 18:43:21] 2025-10-13 16:42:49,838 | INFO     | ***************************************
[2025-10-13 18:43:21] 2025-10-13 16:42:50,341 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-10-13 18:43:21] 2025-10-13 16:42:50,354 | INFO     | sufficient remaining disk space (56030658560 B)
[2025-10-13 18:43:21] 2025-10-13 16:42:50,354 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 18:43:21] 2025-10-13 16:42:50,355 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 18:43:21] 2025-10-13 16:42:50,355 | INFO     | update_server=False
[2025-10-13 18:43:21] 2025-10-13 16:42:50,355 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 18:43:21] 2025-10-13 16:42:50,355 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:43:21] 2025-10-13 16:42:50,366 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 18:43:21] 2025-10-13 16:42:50,367 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 18:43:21] 2025-10-13 16:42:50,367 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:43:21] 2025-10-13 16:42:50,367 | INFO     | will abort loop
[2025-10-13 18:43:21] 2025-10-13 16:42:50,373 | INFO     | all data control threads have been joined
[2025-10-13 18:43:21] 2025-10-13 16:42:51,110 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 18:43:21] 2025-10-13 16:42:51,360 | INFO     | [job] retrieve thread has finished
[2025-10-13 18:43:21] 2025-10-13 16:42:51,361 | INFO     | [job] queue monitor thread has finished
[2025-10-13 18:43:21] 2025-10-13 16:42:51,372 | INFO     | [job] job monitor thread has finished
[2025-10-13 18:43:21] 2025-10-13 16:42:51,379 | INFO     | [data] control thread has finished
[2025-10-13 18:43:21] 2025-10-13 16:42:51,431 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 18:43:21] 2025-10-13 16:42:51,465 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 18:43:21] 2025-10-13 16:42:51,688 | INFO     | all job control threads have been joined
[2025-10-13 18:43:21] 2025-10-13 16:42:51,795 | INFO     | all payload control threads have been joined
[2025-10-13 18:43:21] 2025-10-13 16:42:52,141 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 18:43:21] 2025-10-13 16:42:52,283 | INFO     | [payload] failed_post thread has finished
[2025-10-13 18:43:21] 2025-10-13 16:42:52,662 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 18:43:21] 2025-10-13 16:42:52,693 | INFO     | [job] control thread has finished
[2025-10-13 18:43:21] 2025-10-13 16:42:52,707 | INFO     | [data] copytool_in thread has finished
[2025-10-13 18:43:21] 2025-10-13 16:42:52,710 | INFO     | [job] validate thread has finished
[2025-10-13 18:43:21] 2025-10-13 16:42:52,793 | INFO     | [payload] validate_post thread has finished
[2025-10-13 18:43:21] 2025-10-13 16:42:52,800 | INFO     | [payload] control thread has finished
[2025-10-13 18:43:21] 2025-10-13 16:42:52,819 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 18:43:21] 2025-10-13 16:42:53,437 | INFO     | [data] copytool_out thread has finished
[2025-10-13 18:43:21] 2025-10-13 16:42:54,919 | INFO     | [monitor] cgroup control has ended
[2025-10-13 18:43:21] 2025-10-13 16:42:55,115 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 18:43:21] 2025-10-13 16:42:56,862 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140241870427968)>', '<ExcThread(monitor, started 140241386059520)>']
[2025-10-13 18:43:21] 2025-10-13 16:43:01,886 | INFO     | all workflow threads have been joined
[2025-10-13 18:43:21] 2025-10-13 16:43:01,887 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 18:43:21] 2025-10-13 16:43:01,887 | INFO     | traces error code: 0
[2025-10-13 18:43:21] 2025-10-13 16:43:01,887 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 18:43:21] 2025-10-13 16:43:20,924 | INFO     | PID=3916364 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 18:43:21] 2025-10-13 16:43:20,924 | INFO     | .. there are 2 such processes running
[2025-10-13 18:43:21] 2025-10-13 16:43:20,926 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 18:43:21] 2025-10-13 16:43:20,926 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 18:43:21] 2025-10-13 16:43:20,926 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 18:43:21] 2025-10-13 16:43:20,927 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 18:43:21] 2025-10-13 16:43:20,927 | INFO     | [monitor] control thread has ended
[2025-10-13 18:43:21] 2025-10-13 16:43:20,996 [wrapper] ==== pilot stdout END ====
[2025-10-13 18:43:21] 2025-10-13 16:43:20,998 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 18:43:21] 2025-10-13 16:43:21,000 [wrapper] pilotpid: 3916364
[2025-10-13 18:43:21] 2025-10-13 16:43:21,002 [wrapper] Pilot exit status: 0
[2025-10-13 18:43:21] 2025-10-13 16:43:21,010 [wrapper] pandaids: 6840853984
[2025-10-13 18:43:21] 2025-10-13 16:43:21,035 [wrapper] cleanup supervisor_pilot 3963975 3916365
[2025-10-13 18:43:21] 2025-10-13 16:43:21,037 [wrapper] Test setup, not cleaning
[2025-10-13 18:43:21] 2025-10-13 16:43:21,039 [wrapper] apfmon messages muted
[2025-10-13 18:43:21] 2025-10-13 16:43:21,041 [wrapper] ==== wrapper stdout END ====
[2025-10-13 18:43:21] 2025-10-13 16:43:21,043 [wrapper] ==== wrapper stderr END ====
[2025-10-13 18:43:21]  *** Error codes and diagnostics ***
[2025-10-13 18:43:21]     "exeErrorCode": 0,
[2025-10-13 18:43:21]     "exeErrorDiag": "",
[2025-10-13 18:43:21]     "pilotErrorCode": 0,
[2025-10-13 18:43:21]     "pilotErrorDiag": "",
[2025-10-13 18:43:21]  *** Listing of results directory ***
[2025-10-13 18:43:21] total 411028
[2025-10-13 18:43:21] -rw-r--r-- 1 boinc boinc      5112 Oct 13 00:49 queuedata.json
[2025-10-13 18:43:21] -rw-r--r-- 1 boinc boinc    557409 Oct 13 00:49 pilot3.tar.gz
[2025-10-13 18:43:21] -rwx------ 1 boinc boinc     36292 Oct 13 00:50 runpilot2-wrapper.sh
[2025-10-13 18:43:21] -rw-r--r-- 1 boinc boinc       100 Oct 13 18:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 18:43:21] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 18:02 run_atlas
[2025-10-13 18:43:21] -rw-r--r-- 1 boinc boinc       105 Oct 13 18:02 job.xml
[2025-10-13 18:43:21] -rw-r--r-- 1 boinc boinc      9445 Oct 13 18:02 init_data.xml
[2025-10-13 18:43:21] -rw-r--r-- 2 boinc boinc 221650956 Oct 13 18:02 EVNT.46676267._002030.pool.root.1
[2025-10-13 18:43:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 18:02 start_atlas.sh
[2025-10-13 18:43:21] drwxrwx--x 2 boinc boinc      4096 Oct 13 18:02 shared
[2025-10-13 18:43:21] -rw-r--r-- 2 boinc boinc    569684 Oct 13 18:02 input.tar.gz
[2025-10-13 18:43:21] -rw-r--r-- 1 boinc boinc         0 Oct 13 18:02 boinc_lockfile
[2025-10-13 18:43:21] -rw-r--r-- 1 boinc boinc      2546 Oct 13 18:02 pandaJob.out
[2025-10-13 18:43:21] -rw------- 1 boinc boinc    972783 Oct 13 18:02 agis_schedconf.cvmfs.json
[2025-10-13 18:43:21] -rw------- 1 boinc boinc   1560580 Oct 13 18:02 agis_ddmendpoints.agis.ALL.json
[2025-10-13 18:43:21] drwx------ 5 boinc boinc      4096 Oct 13 18:02 pilot3
[2025-10-13 18:43:21] -rw------- 1 boinc boinc 193898275 Oct 13 18:42 HITS.46676269._091554.pool.root.1
[2025-10-13 18:43:21] -rw-r--r-- 1 boinc boinc       529 Oct 13 18:42 boinc_task_state.xml
[2025-10-13 18:43:21] -rw------- 1 boinc boinc      1014 Oct 13 18:42 memory_monitor_summary.json
[2025-10-13 18:43:21] -rw------- 1 boinc boinc    339419 Oct 13 18:42 log.46676269._091554.job.log.tgz.1
[2025-10-13 18:43:21] -rw------- 1 boinc boinc      7764 Oct 13 18:42 heartbeat.json
[2025-10-13 18:43:21] -rw-r--r-- 1 boinc boinc      8192 Oct 13 18:43 boinc_mmap_file
[2025-10-13 18:43:21] -rw-r--r-- 1 boinc boinc        27 Oct 13 18:43 wrapper_checkpoint.txt
[2025-10-13 18:43:21] -rw------- 1 boinc boinc        95 Oct 13 18:43 pilot_heartbeat.json
[2025-10-13 18:43:21] -rw------- 1 boinc boinc       822 Oct 13 18:43 pilotlog.txt
[2025-10-13 18:43:21] -rw------- 1 boinc boinc    383582 Oct 13 18:43 log.46676269._091554.job.log.1
[2025-10-13 18:43:21] -rw------- 1 boinc boinc       357 Oct 13 18:43 output.list
[2025-10-13 18:43:21] -rw-r--r-- 1 boinc boinc       620 Oct 13 18:43 runtime_log
[2025-10-13 18:43:21] -rw------- 1 boinc boinc    737280 Oct 13 18:43 result.tar.gz
[2025-10-13 18:43:21] -rw-r--r-- 1 boinc boinc      8740 Oct 13 18:43 runtime_log.err
[2025-10-13 18:43:21] -rw------- 1 boinc boinc       658 Oct 13 18:43 h7aKDmU4JS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCwlNDm9Crvym.diag
[2025-10-13 18:43:21] -rw-r--r-- 1 boinc boinc     21819 Oct 13 18:43 stderr.txt
[2025-10-13 18:43:21] HITS file was successfully produced:
[2025-10-13 18:43:21] -rw------- 1 boinc boinc 193898275 Oct 13 18:42 shared/HITS.pool.root.1
[2025-10-13 18:43:21]  *** Contents of shared directory: ***
[2025-10-13 18:43:21] total 407120
[2025-10-13 18:43:21] -rw-r--r-- 2 boinc boinc 221650956 Oct 13 18:02 ATLAS.root_0
[2025-10-13 18:43:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 18:02 start_atlas.sh
[2025-10-13 18:43:21] -rw-r--r-- 2 boinc boinc    569684 Oct 13 18:02 input.tar.gz
[2025-10-13 18:43:21] -rw------- 1 boinc boinc 193898275 Oct 13 18:42 HITS.pool.root.1
[2025-10-13 18:43:21] -rw------- 1 boinc boinc    737280 Oct 13 18:43 result.tar.gz
18:43:22 (3912494): run_atlas exited; CPU time 25808.403433
18:43:22 (3912494): called boinc_finish(0)

</stderr_txt>
]]>

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