Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:55 (473624): wrapper (7.7.26015): starting
00:02:55 (473624): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 00:02:55] Arguments: --nthreads 9
[2025-10-13 00:02:55] Threads: 9
[2025-10-13 00:02:55] Checking for CVMFS
[2025-10-13 00:02:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:02:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:02:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:02:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:02:58] 2.13.2.0 1270615 130195 639728 151647 0 503 13613902 21042177 17437 16776704 0 88544704 99.370 135355339 29266 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 00:02:58] CVMFS is ok
[2025-10-13 00:02:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:02:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:02:58] Further information can be found at the LHC@home message board.
[2025-10-13 00:02:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:02:58] Checking for apptainer binary...
[2025-10-13 00:02:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:02:58] Running /usr/bin/apptainer --version
[2025-10-13 00:02:58] apptainer version 1.4.3-1.el9
[2025-10-13 00:02:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:02:59] c-16-12.aglt2.org
[2025-10-13 00:02:59] apptainer works
[2025-10-13 00:02:59] Set ATHENA_PROC_NUMBER=9
[2025-10-13 00:02:59] Set ATHENA_CORE_NUMBER=9
[2025-10-13 00:02:59] Starting ATLAS job with PandaID=6840853910
[2025-10-13 00:02:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 11:38:38]  *** The last 200 lines of the pilot log: ***
[2025-10-13 11:38:38] 2025-10-13 15:37:30,017 | INFO     | intersect: -13044575917.639013
[2025-10-13 11:38:38] 2025-10-13 15:37:30,072 | INFO     | chi2: 7.062914964053311
[2025-10-13 11:38:38] 2025-10-13 15:37:30,073 | INFO     | current chi2=7.062914964053311 (change=8.55979769915924 %)
[2025-10-13 11:38:38] 2025-10-13 15:37:30,073 | INFO     | right removable region: 672
[2025-10-13 11:38:38] 2025-10-13 15:37:30,074 | INFO     | sum of square deviations: 94512579008.57057
[2025-10-13 11:38:38] 2025-10-13 15:37:30,101 | INFO     | sum of deviations: 490429335589.1997
[2025-10-13 11:38:38] 2025-10-13 15:37:30,101 | INFO     | mean x: 1760349291.02526
[2025-10-13 11:38:38] 2025-10-13 15:37:30,106 | INFO     | mean y: 2096713.576523031
[2025-10-13 11:38:38] 2025-10-13 15:37:30,106 | INFO     | -- intersect: -9132422122.526224
[2025-10-13 11:38:38] 2025-10-13 15:37:30,106 | INFO     | intersect: -9132422122.526224
[2025-10-13 11:38:38] 2025-10-13 15:37:30,107 | INFO     | chi2: 4.068881284983112
[2025-10-13 11:38:38] 2025-10-13 15:37:30,108 | INFO     | current chi2=4.068881284983112 (change=47.32212836618369 %)
[2025-10-13 11:38:38] 2025-10-13 15:37:30,109 | INFO     | sum of square deviations: 92421378652.40125
[2025-10-13 11:38:38] 2025-10-13 15:37:30,133 | INFO     | sum of deviations: 369996071251.84717
[2025-10-13 11:38:38] 2025-10-13 15:37:30,137 | INFO     | mean x: 1760349443.5299401
[2025-10-13 11:38:38] 2025-10-13 15:37:30,137 | INFO     | mean y: 2105490.4326347304
[2025-10-13 11:38:38] 2025-10-13 15:37:30,137 | INFO     | -- intersect: -7045207454.184762
[2025-10-13 11:38:38] 2025-10-13 15:37:30,138 | INFO     | intersect: -7045207454.184762
[2025-10-13 11:38:38] 2025-10-13 15:37:30,139 | INFO     | chi2: 2.5058438013201974
[2025-10-13 11:38:38] 2025-10-13 15:37:30,139 | INFO     | current chi2=2.5058438013201974 (change=38.414428295845504 %)
[2025-10-13 11:38:38] 2025-10-13 15:37:30,140 | INFO     | sum of square deviations: 90361208385.13144
[2025-10-13 11:38:38] 2025-10-13 15:37:30,166 | INFO     | sum of deviations: 289755394979.3574
[2025-10-13 11:38:38] 2025-10-13 15:37:30,166 | INFO     | mean x: 1760349596.036199
[2025-10-13 11:38:38] 2025-10-13 15:37:30,166 | INFO     | mean y: 2111429.443438914
[2025-10-13 11:38:38] 2025-10-13 15:37:30,166 | INFO     | -- intersect: -5642686837.60974
[2025-10-13 11:38:38] 2025-10-13 15:37:30,166 | INFO     | intersect: -5642686837.60974
[2025-10-13 11:38:38] 2025-10-13 15:37:30,167 | INFO     | chi2: 1.870674682990194
[2025-10-13 11:38:38] 2025-10-13 15:37:30,168 | INFO     | current chi2=1.870674682990194 (change=25.34751439795913 %)
[2025-10-13 11:38:38] 2025-10-13 15:37:30,173 | INFO     | sum of square deviations: 88332077635.69598
[2025-10-13 11:38:38] 2025-10-13 15:37:30,199 | INFO     | sum of deviations: 221313307855.16095
[2025-10-13 11:38:38] 2025-10-13 15:37:30,199 | INFO     | mean x: 1760349748.5349543
[2025-10-13 11:38:38] 2025-10-13 15:37:30,199 | INFO     | mean y: 2116569.036474164
[2025-10-13 11:38:38] 2025-10-13 15:37:30,199 | INFO     | -- intersect: -4408385665.916441
[2025-10-13 11:38:38] 2025-10-13 15:37:30,199 | INFO     | intersect: -4408385665.916441
[2025-10-13 11:38:38] 2025-10-13 15:37:30,200 | INFO     | chi2: 1.3857150457273433
[2025-10-13 11:38:38] 2025-10-13 15:37:30,201 | INFO     | current chi2=1.3857150457273433 (change=25.92431712860214 %)
[2025-10-13 11:38:38] 2025-10-13 15:37:30,206 | INFO     | sum of square deviations: 86333511970.18996
[2025-10-13 11:38:38] 2025-10-13 15:37:30,290 | INFO     | sum of deviations: 178979193861.21732
[2025-10-13 11:38:38] 2025-10-13 15:37:30,291 | INFO     | mean x: 1760349901.035222
[2025-10-13 11:38:38] 2025-10-13 15:37:30,291 | INFO     | mean y: 2119800.120980092
[2025-10-13 11:38:38] 2025-10-13 15:37:30,291 | INFO     | -- intersect: -3647285847.9400725
[2025-10-13 11:38:38] 2025-10-13 15:37:30,291 | INFO     | intersect: -3647285847.9400725
[2025-10-13 11:38:38] 2025-10-13 15:37:30,292 | INFO     | chi2: 1.2182755114523562
[2025-10-13 11:38:38] 2025-10-13 15:37:30,293 | INFO     | current chi2=1.2182755114523562 (change=12.083258732829899 %)
[2025-10-13 11:38:38] 2025-10-13 15:37:30,293 | INFO     | left removable region: 50
[2025-10-13 11:38:38] 2025-10-13 15:37:30,294 | INFO     | sum of square deviations: 74611808078.79115
[2025-10-13 11:38:38] 2025-10-13 15:37:30,306 | INFO     | sum of deviations: 161022161544.79086
[2025-10-13 11:38:38] 2025-10-13 15:37:30,307 | INFO     | mean x: 1760350480.533762
[2025-10-13 11:38:38] 2025-10-13 15:37:30,307 | INFO     | mean y: 2126297.533762058
[2025-10-13 11:38:38] 2025-10-13 15:37:30,307 | INFO     | -- intersect: -3796943135.988404
[2025-10-13 11:38:38] 2025-10-13 15:37:30,307 | INFO     | intersect: -3796943135.988404
[2025-10-13 11:38:38] 2025-10-13 15:37:30,308 | INFO     | chi2: 0.4679885600028124
[2025-10-13 11:38:38] 2025-10-13 15:37:30,308 | INFO     | -- intersect: -3796943135.988404
[2025-10-13 11:38:38] 2025-10-13 15:37:30,309 | INFO     | current memory leak: 2.16 B/s (using 622 data points, chi2=0.47)
[2025-10-13 11:38:38] 2025-10-13 15:37:30,470 | INFO     | could have reported an average CPU frequency of 2900 MHz (26 samples)
[2025-10-13 11:38:38] 2025-10-13 15:37:30,471 | INFO     | ..............................
[2025-10-13 11:38:38] 2025-10-13 15:37:30,471 | INFO     | . Timing measurements:
[2025-10-13 11:38:38] 2025-10-13 15:37:30,471 | INFO     | . get job = 0 s
[2025-10-13 11:38:38] 2025-10-13 15:37:30,471 | INFO     | . initial setup = 23 s
[2025-10-13 11:38:38] 2025-10-13 15:37:30,471 | INFO     | . payload setup = 54 s
[2025-10-13 11:38:38] 2025-10-13 15:37:30,471 | INFO     | . stage-in = 0 s
[2025-10-13 11:38:38] 2025-10-13 15:37:30,472 | INFO     | . payload execution = 41358 s
[2025-10-13 11:38:38] 2025-10-13 15:37:30,472 | INFO     | . stage-out = 17 s
[2025-10-13 11:38:38] 2025-10-13 15:37:30,472 | INFO     | . log creation = 0 s
[2025-10-13 11:38:38] 2025-10-13 15:37:30,472 | INFO     | ..............................
[2025-10-13 11:38:38] 2025-10-13 15:37:30,819 | INFO     | 
[2025-10-13 11:38:38] 2025-10-13 15:37:30,819 | INFO     | job summary report
[2025-10-13 11:38:38] 2025-10-13 15:37:30,819 | INFO     | --------------------------------------------------
[2025-10-13 11:38:38] 2025-10-13 15:37:30,819 | INFO     | PanDA job id: 6840853910
[2025-10-13 11:38:38] 2025-10-13 15:37:30,819 | INFO     | task id: 46676269
[2025-10-13 11:38:38] 2025-10-13 15:37:30,820 | INFO     | errors: (none)
[2025-10-13 11:38:38] 2025-10-13 15:37:30,820 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 11:38:38] 2025-10-13 15:37:30,820 | INFO     | pilot state: finished 
[2025-10-13 11:38:38] 2025-10-13 15:37:30,820 | INFO     | transexitcode: 0
[2025-10-13 11:38:38] 2025-10-13 15:37:30,820 | INFO     | exeerrorcode: 0
[2025-10-13 11:38:38] 2025-10-13 15:37:30,820 | INFO     | exeerrordiag: 
[2025-10-13 11:38:38] 2025-10-13 15:37:30,820 | INFO     | exitcode: 0
[2025-10-13 11:38:38] 2025-10-13 15:37:30,821 | INFO     | exitmsg: OK
[2025-10-13 11:38:38] 2025-10-13 15:37:30,821 | INFO     | cpuconsumptiontime: 79298 s
[2025-10-13 11:38:38] 2025-10-13 15:37:30,821 | INFO     | nevents: 400
[2025-10-13 11:38:38] 2025-10-13 15:37:30,821 | INFO     | neventsw: 0
[2025-10-13 11:38:38] 2025-10-13 15:37:30,821 | INFO     | pid: 499849
[2025-10-13 11:38:38] 2025-10-13 15:37:30,821 | INFO     | pgrp: 499849
[2025-10-13 11:38:38] 2025-10-13 15:37:30,821 | INFO     | corecount: 9
[2025-10-13 11:38:38] 2025-10-13 15:37:30,823 | INFO     | event service: False
[2025-10-13 11:38:38] 2025-10-13 15:37:30,823 | INFO     | sizes: {0: 2348028, 1: 2348713, 2: 2348741, 3: 2348940, 5: 2348940, 16: 2348996, 27: 2349152, 38: 2349180, 43: 2349470, 49: 2349498, 41416: 2390860, 41434: 2399858
[2025-10-13 11:38:38] 2025-10-13 15:37:30,823 | INFO     | --------------------------------------------------
[2025-10-13 11:38:38] 2025-10-13 15:37:30,823 | INFO     | 
[2025-10-13 11:38:38] 2025-10-13 15:37:30,824 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-13 11:38:38] 2025-10-13 15:37:30,846 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 11:38:38] 2025-10-13 15:37:30,847 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 11:38:38] 2025-10-13 15:37:30,847 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 11:38:38] 2025-10-13 15:37:30,847 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 11:38:38] 2025-10-13 15:37:30,847 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 11:38:38] 2025-10-13 15:37:30,847 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 11:38:38] 2025-10-13 15:37:30,848 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 11:38:38] 2025-10-13 15:37:30,848 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 11:38:38] 2025-10-13 15:37:30,848 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 11:38:38] 2025-10-13 15:37:30,848 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 11:38:38] 2025-10-13 15:37:30,848 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 11:38:38] 2025-10-13 15:37:30,848 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 11:38:38] 2025-10-13 15:37:30,848 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 11:38:38] 2025-10-13 15:37:30,849 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 11:38:38] 2025-10-13 15:37:30,849 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 11:38:38] 2025-10-13 15:37:30,849 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 11:38:38] 2025-10-13 15:37:30,849 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 11:38:38] 2025-10-13 15:37:30,849 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 11:38:38] 2025-10-13 15:37:30,849 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 11:38:38] 2025-10-13 15:37:30,850 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 11:38:38] 2025-10-13 15:37:30,850 | INFO     | job 6840853910 has completed (purged errors)
[2025-10-13 11:38:38] 2025-10-13 15:37:30,850 | INFO     | overall cleanup function is called
[2025-10-13 11:38:38] 2025-10-13 15:37:31,867 | INFO     | --- collectZombieJob: --- 10, [499849]
[2025-10-13 11:38:38] 2025-10-13 15:37:31,867 | INFO     | zombie collector waiting for pid 499849
[2025-10-13 11:38:38] 2025-10-13 15:37:31,867 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 11:38:38] 2025-10-13 15:37:31,867 | INFO     | collected zombie processes
[2025-10-13 11:38:38] 2025-10-13 15:37:31,868 | INFO     | will attempt to kill all subprocesses of pid=499849
[2025-10-13 11:38:38] 2025-10-13 15:37:33,357 | INFO     | process IDs to be killed: [499849] (in reverse order)
[2025-10-13 11:38:38] 2025-10-13 15:37:33,686 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 11:38:38] 2025-10-13 15:37:33,686 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 11:38:38] 2025-10-13 15:37:33,820 | INFO     | did not find any defunct processes belonging to 499849
[2025-10-13 11:38:38] 2025-10-13 15:37:33,911 | INFO     | did not find any defunct processes belonging to 499849
[2025-10-13 11:38:38] 2025-10-13 15:37:33,911 | INFO     | ready for new job
[2025-10-13 11:38:38] 2025-10-13 15:37:33,931 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 11:38:38] 2025-10-13 15:37:33,964 | INFO     | ***************************************
[2025-10-13 11:38:38] 2025-10-13 15:37:33,965 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 11:38:38] 2025-10-13 15:37:33,965 | INFO     | ***************************************
[2025-10-13 11:38:38] 2025-10-13 15:37:33,965 | INFO     | 
[2025-10-13 11:38:38] 2025-10-13 15:37:33,981 | INFO     | architecture information:
[2025-10-13 11:38:38] 2025-10-13 15:37:33,999 | INFO     | executing command: cat /etc/os-release
[2025-10-13 11:38:38] 2025-10-13 15:37:34,196 | INFO     | cat /etc/os-release:
[2025-10-13 11:38:38] NAME="CentOS Linux"
[2025-10-13 11:38:38] VERSION="7 (Core)"
[2025-10-13 11:38:38] ID="centos"
[2025-10-13 11:38:38] ID_LIKE="rhel fedora"
[2025-10-13 11:38:38] VERSION_ID="7"
[2025-10-13 11:38:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 11:38:38] ANSI_COLOR="0;31"
[2025-10-13 11:38:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 11:38:38] HOME_URL="https://www.centos.org/"
[2025-10-13 11:38:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 11:38:38] 
[2025-10-13 11:38:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 11:38:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 11:38:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 11:38:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 11:38:38] 
[2025-10-13 11:38:38] 2025-10-13 15:37:34,196 | INFO     | ***************************************
[2025-10-13 11:38:38] 2025-10-13 15:37:34,700 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-13 11:38:38] 2025-10-13 15:37:34,933 | INFO     | sufficient remaining disk space (53031731200 B)
[2025-10-13 11:38:38] 2025-10-13 15:37:34,934 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 11:38:38] 2025-10-13 15:37:34,934 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 11:38:38] 2025-10-13 15:37:34,934 | INFO     | update_server=False
[2025-10-13 11:38:38] 2025-10-13 15:37:34,935 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 11:38:38] 2025-10-13 15:37:34,937 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:38:38] 2025-10-13 15:37:34,937 | INFO     | aborting loop
[2025-10-13 11:38:38] 2025-10-13 15:37:34,941 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 11:38:38] 2025-10-13 15:37:35,165 | INFO     | all payload control threads have been joined
[2025-10-13 11:38:38] 2025-10-13 15:37:35,783 | INFO     | all data control threads have been joined
[2025-10-13 11:38:38] 2025-10-13 15:37:35,833 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:38:38] 2025-10-13 15:37:35,941 | INFO     | [job] retrieve thread has finished
[2025-10-13 11:38:38] 2025-10-13 15:37:35,943 | INFO     | [job] job monitor thread has finished
[2025-10-13 11:38:38] 2025-10-13 15:37:36,062 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 11:38:38] 2025-10-13 15:37:36,228 | INFO     | [payload] control thread has finished
[2025-10-13 11:38:38] 2025-10-13 15:37:36,271 | INFO     | all job control threads have been joined
[2025-10-13 11:38:38] 2025-10-13 15:37:36,339 | INFO     | [data] copytool_in thread has finished
[2025-10-13 11:38:38] 2025-10-13 15:37:36,699 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 11:38:38] 2025-10-13 15:37:36,816 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 11:38:38] 2025-10-13 15:37:36,817 | INFO     | [data] control thread has finished
[2025-10-13 11:38:38] 2025-10-13 15:37:36,874 | INFO     | [job] queue monitor thread has finished
[2025-10-13 11:38:38] 2025-10-13 15:37:36,918 | INFO     | [payload] validate_post thread has finished
[2025-10-13 11:38:38] 2025-10-13 15:37:36,950 | INFO     | [data] copytool_out thread has finished
[2025-10-13 11:38:38] 2025-10-13 15:37:37,166 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 11:38:38] 2025-10-13 15:37:37,230 | INFO     | [payload] failed_post thread has finished
[2025-10-13 11:38:38] 2025-10-13 15:37:37,298 | INFO     | [job] control thread has finished
[2025-10-13 11:38:38] 2025-10-13 15:37:37,305 | INFO     | [job] validate thread has finished
[2025-10-13 11:38:38] 2025-10-13 15:37:38,426 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 11:38:38] 2025-10-13 15:37:42,504 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 11:38:38] 2025-10-13 15:38:03,390 | INFO     | PID=483594 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 11:38:38] 2025-10-13 15:38:03,391 | INFO     | .. there are 21 such processes running
[2025-10-13 11:38:38] 2025-10-13 15:38:03,392 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 11:38:38] 2025-10-13 15:38:03,392 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 11:38:38] 2025-10-13 15:38:03,393 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 11:38:38] 2025-10-13 15:38:31,536 | INFO     | [monitor] cgroup control has ended
[2025-10-13 11:38:38] 2025-10-13 15:38:32,925 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140661579446080)>', '<ExcThread(monitor, started 140660564809472)>']
[2025-10-13 11:38:38] 2025-10-13 15:38:33,592 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 11:38:38] 2025-10-13 15:38:33,592 | INFO     | [monitor] control thread has ended
[2025-10-13 11:38:38] 2025-10-13 15:38:37,959 | INFO     | all workflow threads have been joined
[2025-10-13 11:38:38] 2025-10-13 15:38:37,967 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 11:38:38] 2025-10-13 15:38:37,967 | INFO     | traces error code: 0
[2025-10-13 11:38:38] 2025-10-13 15:38:37,968 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 11:38:38] 2025-10-13 15:38:38,523 [wrapper] ==== pilot stdout END ====
[2025-10-13 11:38:38] 2025-10-13 15:38:38,527 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 11:38:38] 2025-10-13 15:38:38,532 [wrapper] pilotpid: 483594
[2025-10-13 11:38:38] 2025-10-13 15:38:38,536 [wrapper] Pilot exit status: 0
[2025-10-13 11:38:38] 2025-10-13 15:38:38,639 [wrapper] pandaids: 6840853910
[2025-10-13 11:38:38] 2025-10-13 15:38:38,708 [wrapper] cleanup supervisor_pilot 1992405 483595
[2025-10-13 11:38:38] 2025-10-13 15:38:38,712 [wrapper] Test setup, not cleaning
[2025-10-13 11:38:38] 2025-10-13 15:38:38,715 [wrapper] apfmon messages muted
[2025-10-13 11:38:38] 2025-10-13 15:38:38,719 [wrapper] ==== wrapper stdout END ====
[2025-10-13 11:38:38] 2025-10-13 15:38:38,722 [wrapper] ==== wrapper stderr END ====
[2025-10-13 11:38:38]  *** Error codes and diagnostics ***
[2025-10-13 11:38:38]     "exeErrorCode": 0,
[2025-10-13 11:38:38]     "exeErrorDiag": "",
[2025-10-13 11:38:38]     "pilotErrorCode": 0,
[2025-10-13 11:38:38]     "pilotErrorDiag": "",
[2025-10-13 11:38:38]  *** Listing of results directory ***
[2025-10-13 11:38:38] total 422664
[2025-10-13 11:38:38] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-13 11:38:38] -rwx------. 1 boincer umatlas     36292 Oct 12 18:47 runpilot2-wrapper.sh
[2025-10-13 11:38:38] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 18:47 queuedata.json
[2025-10-13 11:38:38] -rw-r--r--. 1 boincer umatlas       100 Oct 13 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 11:38:38] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 00:02 run_atlas
[2025-10-13 11:38:38] -rw-r--r--. 1 boincer umatlas       105 Oct 13 00:02 job.xml
[2025-10-13 11:38:38] -rw-r--r--. 2 boincer umatlas 219764389 Oct 13 00:02 EVNT.46676267._004632.pool.root.1
[2025-10-13 11:38:38] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:02 start_atlas.sh
[2025-10-13 11:38:38] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 00:02 shared
[2025-10-13 11:38:38] -rw-r--r--. 2 boincer umatlas    569679 Oct 13 00:02 input.tar.gz
[2025-10-13 11:38:38] -rw-r--r--. 1 boincer umatlas         0 Oct 13 00:02 boinc_lockfile
[2025-10-13 11:38:38] -rw-r--r--. 1 boincer umatlas      2549 Oct 13 00:02 pandaJob.out
[2025-10-13 11:38:38] -rw-------. 1 boincer umatlas    974373 Oct 13 00:04 agis_schedconf.cvmfs.json
[2025-10-13 11:38:38] drwx------. 5 boincer umatlas      4096 Oct 13 00:05 pilot3
[2025-10-13 11:38:38] -rw-------. 1 boincer umatlas 199171341 Oct 13 11:35 HITS.46676269._091510.pool.root.1
[2025-10-13 11:38:38] -rw-r--r--. 1 boincer umatlas       531 Oct 13 11:35 boinc_task_state.xml
[2025-10-13 11:38:38] -rw-------. 1 boincer umatlas      1037 Oct 13 11:36 memory_monitor_summary.json
[2025-10-13 11:38:38] -rw-------. 1 boincer umatlas   1560580 Oct 13 11:36 agis_ddmendpoints.agis.ALL.json
[2025-10-13 11:38:38] -rw-------. 1 boincer umatlas    751341 Oct 13 11:36 log.46676269._091510.job.log.tgz.1
[2025-10-13 11:38:38] -rw-r--r--. 1 boincer umatlas      6524 Oct 13 11:37 init_data.xml
[2025-10-13 11:38:38] -rw-------. 1 boincer umatlas        95 Oct 13 11:37 pilot_heartbeat.json
[2025-10-13 11:38:38] -rw-------. 1 boincer umatlas      7817 Oct 13 11:37 heartbeat.json
[2025-10-13 11:38:38] -rw-r--r--. 1 boincer umatlas        28 Oct 13 11:38 wrapper_checkpoint.txt
[2025-10-13 11:38:38] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 11:38 boinc_mmap_file
[2025-10-13 11:38:38] -rw-------. 1 boincer umatlas      4823 Oct 13 11:38 pilotlog.txt
[2025-10-13 11:38:38] -rw-------. 1 boincer umatlas   4232584 Oct 13 11:38 log.46676269._091510.job.log.1
[2025-10-13 11:38:38] -rw-------. 1 boincer umatlas       357 Oct 13 11:38 output.list
[2025-10-13 11:38:38] -rw-r--r--. 1 boincer umatlas       620 Oct 13 11:38 runtime_log
[2025-10-13 11:38:38] -rw-------. 1 boincer umatlas   5007360 Oct 13 11:38 result.tar.gz
[2025-10-13 11:38:38] -rw-r--r--. 1 boincer umatlas      8699 Oct 13 11:38 runtime_log.err
[2025-10-13 11:38:38] -rw-------. 1 boincer umatlas       658 Oct 13 11:38 dSoKDmP1JS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvulNDmoTZLKo.diag
[2025-10-13 11:38:38] -rw-r--r--. 1 boincer umatlas     21035 Oct 13 11:38 stderr.txt
[2025-10-13 11:38:38] HITS file was successfully produced:
[2025-10-13 11:38:38] -rw-------. 1 boincer umatlas 199171341 Oct 13 11:35 shared/HITS.pool.root.1
[2025-10-13 11:38:38]  *** Contents of shared directory: ***
[2025-10-13 11:38:38] total 414592
[2025-10-13 11:38:38] -rw-r--r--. 2 boincer umatlas 219764389 Oct 13 00:02 ATLAS.root_0
[2025-10-13 11:38:38] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 00:02 start_atlas.sh
[2025-10-13 11:38:38] -rw-r--r--. 2 boincer umatlas    569679 Oct 13 00:02 input.tar.gz
[2025-10-13 11:38:38] -rw-------. 1 boincer umatlas 199171341 Oct 13 11:35 HITS.pool.root.1
[2025-10-13 11:38:38] -rw-------. 1 boincer umatlas   5007360 Oct 13 11:38 result.tar.gz
11:38:40 (473624): run_atlas exited; CPU time 80818.191801
11:38:40 (473624): called boinc_finish(0)

</stderr_txt>
]]>

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