Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:45:59 (78799): wrapper (7.7.26015): starting
23:45:59 (78799): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 23:45:59] Arguments: --nthreads 9
[2025-10-12 23:45:59] Threads: 9
[2025-10-12 23:45:59] Checking for CVMFS
[2025-10-12 23:45:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 23:45:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 23:45:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 23:46:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 23:46:00] 2.13.2.0 128560 116893 206384 151647 3 433 30329759 39288832 5349 16776704 1 74514502 99.577 80464159 35344 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 23:46:00] CVMFS is ok
[2025-10-12 23:46:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 23:46:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 23:46:00] Further information can be found at the LHC@home message board.
[2025-10-12 23:46:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 23:46:00] Checking for apptainer binary...
[2025-10-12 23:46:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 23:46:00] Running /usr/bin/apptainer --version
[2025-10-12 23:46:00] apptainer version 1.4.3-1.el9
[2025-10-12 23:46:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 23:46:00] c-211-5.aglt2.org
[2025-10-12 23:46:00] apptainer works
[2025-10-12 23:46:00] Set ATHENA_PROC_NUMBER=9
[2025-10-12 23:46:00] Set ATHENA_CORE_NUMBER=9
[2025-10-12 23:46:00] Starting ATLAS job with PandaID=6840852568
[2025-10-12 23:46:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:54:36]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:54:36] 2025-10-13 05:53:56,864 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 01:54:36] 2025-10-13 05:53:56,864 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 01:54:36] 2025-10-13 05:53:56,866 | INFO     | fitting pss+swap vs Time
[2025-10-13 01:54:36] 2025-10-13 05:53:56,866 | INFO     | sum of square deviations: 605573968.6079986
[2025-10-13 01:54:36] 2025-10-13 05:53:56,866 | INFO     | sum of deviations: 17052822749.223999
[2025-10-13 01:54:36] 2025-10-13 05:53:56,866 | INFO     | mean x: 1760330993.056
[2025-10-13 01:54:36] 2025-10-13 05:53:56,866 | INFO     | mean y: 2532019.968
[2025-10-13 01:54:36] 2025-10-13 05:53:56,866 | INFO     | -- intersect: -49567981180.18103
[2025-10-13 01:54:36] 2025-10-13 05:53:56,866 | INFO     | intersect: -49567981180.18103
[2025-10-13 01:54:36] 2025-10-13 05:53:56,867 | INFO     | chi2: 1.5904993036160497
[2025-10-13 01:54:36] 2025-10-13 05:53:56,867 | INFO     | sum of square deviations: 535770143.5916666
[2025-10-13 01:54:36] 2025-10-13 05:53:56,867 | INFO     | sum of deviations: 16210295365.541664
[2025-10-13 01:54:36] 2025-10-13 05:53:56,867 | INFO     | mean x: 1760330840.5583334
[2025-10-13 01:54:36] 2025-10-13 05:53:56,867 | INFO     | mean y: 2530179.7083333335
[2025-10-13 01:54:36] 2025-10-13 05:53:56,867 | INFO     | -- intersect: -53258151117.738
[2025-10-13 01:54:36] 2025-10-13 05:53:56,867 | INFO     | intersect: -53258151117.738
[2025-10-13 01:54:36] 2025-10-13 05:53:56,868 | INFO     | chi2: 1.5932145835216338
[2025-10-13 01:54:36] 2025-10-13 05:53:56,868 | INFO     | current chi2=1.5932145835216338 (change=-0.17071871074767486 %)
[2025-10-13 01:54:36] 2025-10-13 05:53:56,868 | INFO     | right removable region: 119
[2025-10-13 01:54:36] 2025-10-13 05:53:56,868 | INFO     | sum of square deviations: 535765873.5916666
[2025-10-13 01:54:36] 2025-10-13 05:53:56,868 | INFO     | sum of deviations: -3503759276.3749876
[2025-10-13 01:54:36] 2025-10-13 05:53:56,868 | INFO     | mean x: 1760331145.5583334
[2025-10-13 01:54:36] 2025-10-13 05:53:56,868 | INFO     | mean y: 2576214.125
[2025-10-13 01:54:36] 2025-10-13 05:53:56,868 | INFO     | -- intersect: 11514650582.34537
[2025-10-13 01:54:36] 2025-10-13 05:53:56,869 | INFO     | intersect: 11514650582.34537
[2025-10-13 01:54:36] 2025-10-13 05:53:56,869 | INFO     | chi2: 0.07098982579596388
[2025-10-13 01:54:36] 2025-10-13 05:53:56,869 | INFO     | current chi2=0.07098982579596388 (change=95.53663270178325 %)
[2025-10-13 01:54:36] 2025-10-13 05:53:56,869 | INFO     | sum of square deviations: 471539278.5739124
[2025-10-13 01:54:36] 2025-10-13 05:53:56,869 | INFO     | sum of deviations: -4505652847.130437
[2025-10-13 01:54:36] 2025-10-13 05:53:56,869 | INFO     | mean x: 1760331298.0608695
[2025-10-13 01:54:36] 2025-10-13 05:53:56,869 | INFO     | mean y: 2578447.304347826
[2025-10-13 01:54:36] 2025-10-13 05:53:56,869 | INFO     | -- intersect: 16822898801.078533
[2025-10-13 01:54:36] 2025-10-13 05:53:56,869 | INFO     | intersect: 16822898801.078533
[2025-10-13 01:54:36] 2025-10-13 05:53:56,870 | INFO     | chi2: 0.04825640035221638
[2025-10-13 01:54:36] 2025-10-13 05:53:56,870 | INFO     | current chi2=0.04825640035221638 (change=32.02349799968098 %)
[2025-10-13 01:54:36] 2025-10-13 05:53:56,870 | INFO     | sum of square deviations: 412668513.1727273
[2025-10-13 01:54:36] 2025-10-13 05:53:56,870 | INFO     | sum of deviations: -2088594360.3909094
[2025-10-13 01:54:36] 2025-10-13 05:53:56,870 | INFO     | mean x: 1760331450.5545454
[2025-10-13 01:54:36] 2025-10-13 05:53:56,870 | INFO     | mean y: 2572170.481818182
[2025-10-13 01:54:36] 2025-10-13 05:53:56,870 | INFO     | -- intersect: 8911946699.15607
[2025-10-13 01:54:36] 2025-10-13 05:53:56,870 | INFO     | intersect: 8911946699.15607
[2025-10-13 01:54:36] 2025-10-13 05:53:56,871 | INFO     | chi2: 0.03869190496907865
[2025-10-13 01:54:36] 2025-10-13 05:53:56,871 | INFO     | current chi2=0.03869190496907865 (change=19.820159218938592 %)
[2025-10-13 01:54:36] 2025-10-13 05:53:56,871 | INFO     | left removable region: 30
[2025-10-13 01:54:36] 2025-10-13 05:53:56,871 | INFO     | sum of square deviations: 218555562.7191012
[2025-10-13 01:54:36] 2025-10-13 05:53:56,871 | INFO     | sum of deviations: 1698794773.05618
[2025-10-13 01:54:36] 2025-10-13 05:53:56,871 | INFO     | mean x: 1760331725.0561798
[2025-10-13 01:54:36] 2025-10-13 05:53:56,871 | INFO     | mean y: 2559486.988764045
[2025-10-13 01:54:36] 2025-10-13 05:53:56,871 | INFO     | -- intersect: -13680196038.268108
[2025-10-13 01:54:36] 2025-10-13 05:53:56,871 | INFO     | intersect: -13680196038.268108
[2025-10-13 01:54:36] 2025-10-13 05:53:56,871 | INFO     | chi2: 9.709402134862495e-05
[2025-10-13 01:54:36] 2025-10-13 05:53:56,872 | INFO     | -- intersect: -13680196038.268108
[2025-10-13 01:54:36] 2025-10-13 05:53:56,872 | INFO     | current memory leak: 7.77 B/s (using 89 data points, chi2=0.00)
[2025-10-13 01:54:36] 2025-10-13 05:53:56,872 | INFO     | could have reported an average CPU frequency of 2610 MHz (8 samples)
[2025-10-13 01:54:36] 2025-10-13 05:53:56,872 | INFO     | ..............................
[2025-10-13 01:54:36] 2025-10-13 05:53:56,872 | INFO     | . Timing measurements:
[2025-10-13 01:54:36] 2025-10-13 05:53:56,872 | INFO     | . get job = 0 s
[2025-10-13 01:54:36] 2025-10-13 05:53:56,872 | INFO     | . initial setup = 3 s
[2025-10-13 01:54:36] 2025-10-13 05:53:56,872 | INFO     | . payload setup = 8 s
[2025-10-13 01:54:36] 2025-10-13 05:53:56,872 | INFO     | . stage-in = 0 s
[2025-10-13 01:54:36] 2025-10-13 05:53:56,872 | INFO     | . payload execution = 7621 s
[2025-10-13 01:54:36] 2025-10-13 05:53:56,872 | INFO     | . stage-out = 0 s
[2025-10-13 01:54:36] 2025-10-13 05:53:56,872 | INFO     | . log creation = 0 s
[2025-10-13 01:54:36] 2025-10-13 05:53:56,873 | INFO     | ..............................
[2025-10-13 01:54:36] 2025-10-13 05:53:56,927 | INFO     | 
[2025-10-13 01:54:36] 2025-10-13 05:53:56,927 | INFO     | job summary report
[2025-10-13 01:54:36] 2025-10-13 05:53:56,927 | INFO     | --------------------------------------------------
[2025-10-13 01:54:36] 2025-10-13 05:53:56,927 | INFO     | PanDA job id: 6840852568
[2025-10-13 01:54:36] 2025-10-13 05:53:56,928 | INFO     | task id: 46676269
[2025-10-13 01:54:36] 2025-10-13 05:53:56,928 | INFO     | errors: (none)
[2025-10-13 01:54:36] 2025-10-13 05:53:56,928 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 01:54:36] 2025-10-13 05:53:56,928 | INFO     | pilot state: finished 
[2025-10-13 01:54:36] 2025-10-13 05:53:56,928 | INFO     | transexitcode: 0
[2025-10-13 01:54:36] 2025-10-13 05:53:56,928 | INFO     | exeerrorcode: 0
[2025-10-13 01:54:36] 2025-10-13 05:53:56,928 | INFO     | exeerrordiag: 
[2025-10-13 01:54:36] 2025-10-13 05:53:56,928 | INFO     | exitcode: 0
[2025-10-13 01:54:36] 2025-10-13 05:53:56,928 | INFO     | exitmsg: OK
[2025-10-13 01:54:36] 2025-10-13 05:53:56,928 | INFO     | cpuconsumptiontime: 51210 s
[2025-10-13 01:54:36] 2025-10-13 05:53:56,928 | INFO     | nevents: 400
[2025-10-13 01:54:36] 2025-10-13 05:53:56,929 | INFO     | neventsw: 0
[2025-10-13 01:54:36] 2025-10-13 05:53:56,929 | INFO     | pid: 90275
[2025-10-13 01:54:36] 2025-10-13 05:53:56,929 | INFO     | pgrp: 90275
[2025-10-13 01:54:36] 2025-10-13 05:53:56,929 | INFO     | corecount: 9
[2025-10-13 01:54:36] 2025-10-13 05:53:56,929 | INFO     | event service: False
[2025-10-13 01:54:36] 2025-10-13 05:53:56,929 | INFO     | sizes: {0: 2348635, 1: 2348834, 6: 2349096, 12: 2349124, 7634: 2376745, 7635: 2385743, 7636: 2385927, 7642: 2386121}
[2025-10-13 01:54:36] 2025-10-13 05:53:56,929 | INFO     | --------------------------------------------------
[2025-10-13 01:54:36] 2025-10-13 05:53:56,929 | INFO     | 
[2025-10-13 01:54:36] 2025-10-13 05:53:56,929 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-13 01:54:36] 2025-10-13 05:53:56,943 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:54:36] 2025-10-13 05:53:56,944 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:54:36] 2025-10-13 05:53:56,944 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:54:36] 2025-10-13 05:53:56,944 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:54:36] 2025-10-13 05:53:56,944 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:54:36] 2025-10-13 05:53:56,944 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:54:36] 2025-10-13 05:53:56,944 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:54:36] 2025-10-13 05:53:56,944 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:54:36] 2025-10-13 05:53:56,944 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:54:36] 2025-10-13 05:53:56,944 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:54:36] 2025-10-13 05:53:56,944 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:54:36] 2025-10-13 05:53:56,944 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:54:36] 2025-10-13 05:53:56,944 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:54:36] 2025-10-13 05:53:56,944 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:54:36] 2025-10-13 05:53:56,944 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:54:36] 2025-10-13 05:53:56,944 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:54:36] 2025-10-13 05:53:56,945 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:54:36] 2025-10-13 05:53:56,945 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:54:36] 2025-10-13 05:53:56,945 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:54:36] 2025-10-13 05:53:56,945 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:54:36] 2025-10-13 05:53:56,945 | INFO     | job 6840852568 has completed (purged errors)
[2025-10-13 01:54:36] 2025-10-13 05:53:56,945 | INFO     | overall cleanup function is called
[2025-10-13 01:54:36] 2025-10-13 05:53:57,952 | INFO     | --- collectZombieJob: --- 10, [90275]
[2025-10-13 01:54:36] 2025-10-13 05:53:57,952 | INFO     | zombie collector waiting for pid 90275
[2025-10-13 01:54:36] 2025-10-13 05:53:57,953 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:54:36] 2025-10-13 05:53:57,953 | INFO     | collected zombie processes
[2025-10-13 01:54:36] 2025-10-13 05:53:57,953 | INFO     | will attempt to kill all subprocesses of pid=90275
[2025-10-13 01:54:36] 2025-10-13 05:53:58,166 | INFO     | process IDs to be killed: [90275] (in reverse order)
[2025-10-13 01:54:36] 2025-10-13 05:53:58,239 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:54:36] 2025-10-13 05:53:58,240 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:54:36] 2025-10-13 05:53:58,249 | INFO     | did not find any defunct processes belonging to 90275
[2025-10-13 01:54:36] 2025-10-13 05:53:58,259 | INFO     | did not find any defunct processes belonging to 90275
[2025-10-13 01:54:36] 2025-10-13 05:53:58,259 | INFO     | ready for new job
[2025-10-13 01:54:36] 2025-10-13 05:53:58,259 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:54:36] 2025-10-13 05:53:58,262 | INFO     | ***************************************
[2025-10-13 01:54:36] 2025-10-13 05:53:58,262 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:54:36] 2025-10-13 05:53:58,262 | INFO     | ***************************************
[2025-10-13 01:54:36] 2025-10-13 05:53:58,262 | INFO     | 
[2025-10-13 01:54:36] 2025-10-13 05:53:58,264 | INFO     | architecture information:
[2025-10-13 01:54:36] 2025-10-13 05:53:58,265 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:54:36] 2025-10-13 05:53:58,281 | INFO     | cat /etc/os-release:
[2025-10-13 01:54:36] NAME="CentOS Linux"
[2025-10-13 01:54:36] VERSION="7 (Core)"
[2025-10-13 01:54:36] ID="centos"
[2025-10-13 01:54:36] ID_LIKE="rhel fedora"
[2025-10-13 01:54:36] VERSION_ID="7"
[2025-10-13 01:54:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:54:36] ANSI_COLOR="0;31"
[2025-10-13 01:54:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:54:36] HOME_URL="https://www.centos.org/"
[2025-10-13 01:54:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:54:36] 
[2025-10-13 01:54:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:54:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:54:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:54:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:54:36] 
[2025-10-13 01:54:36] 2025-10-13 05:53:58,281 | INFO     | ***************************************
[2025-10-13 01:54:36] 2025-10-13 05:53:58,784 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-13 01:54:36] 2025-10-13 05:53:58,801 | INFO     | sufficient remaining disk space (52415168512 B)
[2025-10-13 01:54:36] 2025-10-13 05:53:58,801 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:54:36] 2025-10-13 05:53:58,801 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:54:36] 2025-10-13 05:53:58,802 | INFO     | update_server=False
[2025-10-13 01:54:36] 2025-10-13 05:53:58,802 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:54:36] 2025-10-13 05:53:58,802 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:54:36] 2025-10-13 05:53:58,802 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:54:36] 2025-10-13 05:53:59,338 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:54:36] 2025-10-13 05:53:59,338 | INFO     | aborting loop
[2025-10-13 01:54:36] 2025-10-13 05:53:59,392 | INFO     | all payload control threads have been joined
[2025-10-13 01:54:36] 2025-10-13 05:53:59,436 | INFO     | all data control threads have been joined
[2025-10-13 01:54:36] 2025-10-13 05:53:59,806 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:54:36] 2025-10-13 05:53:59,807 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:54:36] 2025-10-13 05:53:59,849 | INFO     | [job] validate thread has finished
[2025-10-13 01:54:36] 2025-10-13 05:54:00,127 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:54:36] 2025-10-13 05:54:00,343 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:54:36] 2025-10-13 05:54:00,392 | INFO     | [payload] control thread has finished
[2025-10-13 01:54:36] 2025-10-13 05:54:00,395 | INFO     | all job control threads have been joined
[2025-10-13 01:54:36] 2025-10-13 05:54:00,441 | INFO     | [data] control thread has finished
[2025-10-13 01:54:36] 2025-10-13 05:54:00,520 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:54:36] 2025-10-13 05:54:00,721 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:54:36] 2025-10-13 05:54:00,808 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:54:36] 2025-10-13 05:54:01,187 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:54:36] 2025-10-13 05:54:01,225 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:54:36] 2025-10-13 05:54:01,329 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:54:36] 2025-10-13 05:54:01,399 | INFO     | [job] control thread has finished
[2025-10-13 01:54:36] 2025-10-13 05:54:02,064 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:54:36] 2025-10-13 05:54:06,067 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:54:36] 2025-10-13 05:54:09,356 | INFO     | job.realtimelogging is not enabled
[2025-10-13 01:54:36] 2025-10-13 05:54:10,362 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:54:36] 2025-10-13 05:54:28,623 | INFO     | PID=82745 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 01:54:36] 2025-10-13 05:54:28,623 | INFO     | .. there are 6 such processes running
[2025-10-13 01:54:36] 2025-10-13 05:54:28,623 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:54:36] 2025-10-13 05:54:28,623 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:54:36] 2025-10-13 05:54:28,623 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:54:36] 2025-10-13 05:54:29,145 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:54:36] 2025-10-13 05:54:30,972 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140294901163840)>', '<ExcThread(monitor, started 140294553065216)>']
[2025-10-13 01:54:36] 2025-10-13 05:54:31,638 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:54:36] 2025-10-13 05:54:31,638 | INFO     | [monitor] control thread has ended
[2025-10-13 01:54:36] 2025-10-13 05:54:35,997 | INFO     | all workflow threads have been joined
[2025-10-13 01:54:36] 2025-10-13 05:54:35,997 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:54:36] 2025-10-13 05:54:35,998 | INFO     | traces error code: 0
[2025-10-13 01:54:36] 2025-10-13 05:54:35,998 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:54:36] 2025-10-13 05:54:36,142 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:54:36] 2025-10-13 05:54:36,145 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:54:36] 2025-10-13 05:54:36,148 [wrapper] pilotpid: 82745
[2025-10-13 01:54:36] 2025-10-13 05:54:36,151 [wrapper] Pilot exit status: 0
[2025-10-13 01:54:36] 2025-10-13 05:54:36,160 [wrapper] pandaids: 6840852568
[2025-10-13 01:54:36] 2025-10-13 05:54:36,207 [wrapper] cleanup supervisor_pilot  271634 82746
[2025-10-13 01:54:36] 2025-10-13 05:54:36,209 [wrapper] Test setup, not cleaning
[2025-10-13 01:54:36] 2025-10-13 05:54:36,212 [wrapper] apfmon messages muted
[2025-10-13 01:54:36] 2025-10-13 05:54:36,214 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:54:36] 2025-10-13 05:54:36,217 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:54:36]  *** Error codes and diagnostics ***
[2025-10-13 01:54:36]     "exeErrorCode": 0,
[2025-10-13 01:54:36]     "exeErrorDiag": "",
[2025-10-13 01:54:36]     "pilotErrorCode": 0,
[2025-10-13 01:54:36]     "pilotErrorDiag": "",
[2025-10-13 01:54:36]  *** Listing of results directory ***
[2025-10-13 01:54:36] total 420520
[2025-10-13 01:54:36] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-13 01:54:36] -rwx------. 1 boincer umatlas     36292 Oct 12 18:43 runpilot2-wrapper.sh
[2025-10-13 01:54:36] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 18:43 queuedata.json
[2025-10-13 01:54:36] -rw-r--r--. 1 boincer umatlas       100 Oct 12 23:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:54:36] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 23:45 run_atlas
[2025-10-13 01:54:36] -rw-r--r--. 1 boincer umatlas       105 Oct 12 23:45 job.xml
[2025-10-13 01:54:36] -rw-r--r--. 2 boincer umatlas 222050455 Oct 12 23:45 EVNT.46676267._004627.pool.root.1
[2025-10-13 01:54:36] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 23:45 start_atlas.sh
[2025-10-13 01:54:36] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 23:45 shared
[2025-10-13 01:54:36] -rw-r--r--. 2 boincer umatlas    569680 Oct 12 23:45 input.tar.gz
[2025-10-13 01:54:36] -rw-r--r--. 1 boincer umatlas         0 Oct 12 23:45 boinc_lockfile
[2025-10-13 01:54:36] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 23:46 pandaJob.out
[2025-10-13 01:54:36] -rw-------. 1 boincer umatlas    974373 Oct 12 23:46 agis_schedconf.cvmfs.json
[2025-10-13 01:54:36] -rw-------. 1 boincer umatlas   1560580 Oct 12 23:46 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:54:36] drwx------. 5 boincer umatlas      4096 Oct 12 23:46 pilot3
[2025-10-13 01:54:36] -rw-r--r--. 1 boincer umatlas      6659 Oct 13 01:48 init_data.xml
[2025-10-13 01:54:36] -rw-r--r--. 1 boincer umatlas       529 Oct 13 01:53 boinc_task_state.xml
[2025-10-13 01:54:36] -rw-------. 1 boincer umatlas 201690947 Oct 13 01:53 HITS.46676269._091397.pool.root.1
[2025-10-13 01:54:36] -rw-------. 1 boincer umatlas        95 Oct 13 01:53 pilot_heartbeat.json
[2025-10-13 01:54:36] -rw-------. 1 boincer umatlas      1035 Oct 13 01:53 memory_monitor_summary.json
[2025-10-13 01:54:36] -rw-------. 1 boincer umatlas    398642 Oct 13 01:53 log.46676269._091397.job.log.tgz.1
[2025-10-13 01:54:36] -rw-------. 1 boincer umatlas      7815 Oct 13 01:53 heartbeat.json
[2025-10-13 01:54:36] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 01:54 boinc_mmap_file
[2025-10-13 01:54:36] -rw-r--r--. 1 boincer umatlas        27 Oct 13 01:54 wrapper_checkpoint.txt
[2025-10-13 01:54:36] -rw-------. 1 boincer umatlas      4893 Oct 13 01:54 pilotlog.txt
[2025-10-13 01:54:36] -rw-------. 1 boincer umatlas   1086426 Oct 13 01:54 log.46676269._091397.job.log.1
[2025-10-13 01:54:36] -rw-------. 1 boincer umatlas       357 Oct 13 01:54 output.list
[2025-10-13 01:54:36] -rw-r--r--. 1 boincer umatlas       620 Oct 13 01:54 runtime_log
[2025-10-13 01:54:36] -rw-------. 1 boincer umatlas   1505280 Oct 13 01:54 result.tar.gz
[2025-10-13 01:54:36] -rw-------. 1 boincer umatlas       651 Oct 13 01:54 XteKDmJyJS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm1CVMDmaPwebm.diag
[2025-10-13 01:54:36] -rw-r--r--. 1 boincer umatlas      8698 Oct 13 01:54 runtime_log.err
[2025-10-13 01:54:36] -rw-r--r--. 1 boincer umatlas     20934 Oct 13 01:54 stderr.txt
[2025-10-13 01:54:36] HITS file was successfully produced:
[2025-10-13 01:54:36] -rw-------. 1 boincer umatlas 201690947 Oct 13 01:53 shared/HITS.pool.root.1
[2025-10-13 01:54:36]  *** Contents of shared directory: ***
[2025-10-13 01:54:36] total 415864
[2025-10-13 01:54:36] -rw-r--r--. 2 boincer umatlas 222050455 Oct 12 23:45 ATLAS.root_0
[2025-10-13 01:54:36] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 23:45 start_atlas.sh
[2025-10-13 01:54:36] -rw-r--r--. 2 boincer umatlas    569680 Oct 12 23:45 input.tar.gz
[2025-10-13 01:54:36] -rw-------. 1 boincer umatlas 201690947 Oct 13 01:53 HITS.pool.root.1
[2025-10-13 01:54:36] -rw-------. 1 boincer umatlas   1505280 Oct 13 01:54 result.tar.gz
01:54:37 (78799): run_atlas exited; CPU time 51336.750081
01:54:37 (78799): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN