Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:05:36 (2579478): wrapper (7.7.26015): starting
15:05:36 (2579478): wrapper: running run_atlas (--nthreads 2)
[2025-10-13 15:05:36] Arguments: --nthreads 2
[2025-10-13 15:05:36] Threads: 2
[2025-10-13 15:05:36] Checking for CVMFS
[2025-10-13 15:05:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 15:05:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 15:05:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 15:05:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 15:05:36] 2.9.2.0 1264658 5770 63440 151661 1 57 27532112 36864000 0 130560 0 3470997 99.988 203230 851 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 15:05:36] CVMFS is ok
[2025-10-13 15:05:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 15:05:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 15:05:36] Further information can be found at the LHC@home message board.
[2025-10-13 15:05:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 15:05:36] Checking for apptainer binary...
[2025-10-13 15:05:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 15:05:36] Running /usr/bin/apptainer --version
[2025-10-13 15:05:36] apptainer version 1.4.1-1.1
[2025-10-13 15:05:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 15:05:36] magicA252b
[2025-10-13 15:05:36] apptainer works
[2025-10-13 15:05:36] Set ATHENA_PROC_NUMBER=2
[2025-10-13 15:05:36] Set ATHENA_CORE_NUMBER=2
[2025-10-13 15:05:36] Starting ATLAS job with PandaID=6840715333
[2025-10-13 15:05:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 17:09:12]  *** The last 200 lines of the pilot log: ***
[2025-10-13 17:09:12] 2025-10-13 15:08:40,330 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 17:09:12] 2025-10-13 15:08:40,330 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 17:09:12] 2025-10-13 15:08:40,330 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 17:09:12] 2025-10-13 15:08:40,330 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 17:09:12] 2025-10-13 15:08:40,330 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 17:09:12] 2025-10-13 15:08:40,330 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 17:09:12] 2025-10-13 15:08:40,330 | INFO     | job 6840715333 has completed (purged errors)
[2025-10-13 17:09:12] 2025-10-13 15:08:40,330 | INFO     | overall cleanup function is called
[2025-10-13 17:09:12] 2025-10-13 15:08:41,336 | INFO     | --- collectZombieJob: --- 10, [2589594]
[2025-10-13 17:09:12] 2025-10-13 15:08:41,336 | INFO     | zombie collector waiting for pid 2589594
[2025-10-13 17:09:12] 2025-10-13 15:08:41,337 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 17:09:12] 2025-10-13 15:08:41,337 | INFO     | collected zombie processes
[2025-10-13 17:09:12] 2025-10-13 15:08:41,337 | INFO     | will attempt to kill all subprocesses of pid=2589594
[2025-10-13 17:09:12] 2025-10-13 15:08:41,371 | INFO     | process IDs to be killed: [2589594] (in reverse order)
[2025-10-13 17:09:12] 2025-10-13 15:08:41,391 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 17:09:12] 2025-10-13 15:08:41,391 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 17:09:12] 2025-10-13 15:08:41,392 | INFO     | did not find any defunct processes belonging to 2589594
[2025-10-13 17:09:12] 2025-10-13 15:08:41,393 | INFO     | did not find any defunct processes belonging to 2589594
[2025-10-13 17:09:12] 2025-10-13 15:08:41,393 | INFO     | ready for new job
[2025-10-13 17:09:12] 2025-10-13 15:08:41,393 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 17:09:12] 2025-10-13 15:08:41,393 | INFO     | ***************************************
[2025-10-13 17:09:12] 2025-10-13 15:08:41,393 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 17:09:12] 2025-10-13 15:08:41,393 | INFO     | ***************************************
[2025-10-13 17:09:12] 2025-10-13 15:08:41,393 | INFO     | 
[2025-10-13 17:09:12] 2025-10-13 15:08:41,394 | INFO     | architecture information:
[2025-10-13 17:09:12] 2025-10-13 15:08:41,394 | INFO     | executing command: cat /etc/os-release
[2025-10-13 17:09:12] 2025-10-13 15:08:41,401 | INFO     | cat /etc/os-release:
[2025-10-13 17:09:12] NAME="CentOS Linux"
[2025-10-13 17:09:12] VERSION="7 (Core)"
[2025-10-13 17:09:12] ID="centos"
[2025-10-13 17:09:12] ID_LIKE="rhel fedora"
[2025-10-13 17:09:12] VERSION_ID="7"
[2025-10-13 17:09:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 17:09:12] ANSI_COLOR="0;31"
[2025-10-13 17:09:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 17:09:12] HOME_URL="https://www.centos.org/"
[2025-10-13 17:09:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 17:09:12] 
[2025-10-13 17:09:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 17:09:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 17:09:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 17:09:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 17:09:12] 
[2025-10-13 17:09:12] 2025-10-13 15:08:41,401 | INFO     | ***************************************
[2025-10-13 17:09:12] 2025-10-13 15:08:41,905 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 17:09:12] 2025-10-13 15:08:41,916 | INFO     | sufficient remaining disk space (333450313728 B)
[2025-10-13 17:09:12] 2025-10-13 15:08:41,916 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 17:09:12] 2025-10-13 15:08:41,916 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 17:09:12] 2025-10-13 15:08:41,916 | INFO     | update_server=False
[2025-10-13 17:09:12] 2025-10-13 15:08:41,916 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 17:09:12] 2025-10-13 15:08:41,916 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:09:12] 2025-10-13 15:08:41,916 | INFO     | aborting loop
[2025-10-13 17:09:12] 2025-10-13 15:08:41,917 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:09:12] 2025-10-13 15:08:42,655 | INFO     | all payload control threads have been joined
[2025-10-13 17:09:12] 2025-10-13 15:08:42,731 | INFO     | all data control threads have been joined
[2025-10-13 17:09:12] 2025-10-13 15:08:42,922 | INFO     | [job] retrieve thread has finished
[2025-10-13 17:09:12] 2025-10-13 15:08:42,923 | INFO     | [job] job monitor thread has finished
[2025-10-13 17:09:12] 2025-10-13 15:08:42,923 | INFO     | [job] queue monitor thread has finished
[2025-10-13 17:09:12] 2025-10-13 15:08:43,036 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 17:09:12] 2025-10-13 15:08:43,093 | INFO     | all job control threads have been joined
[2025-10-13 17:09:12] 2025-10-13 15:08:43,321 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 17:09:12] 2025-10-13 15:08:43,346 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 17:09:12] 2025-10-13 15:08:43,599 | INFO     | [payload] failed_post thread has finished
[2025-10-13 17:09:12] 2025-10-13 15:08:43,600 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 17:09:12] 2025-10-13 15:08:43,661 | INFO     | [payload] control thread has finished
[2025-10-13 17:09:12] 2025-10-13 15:08:43,737 | INFO     | [data] control thread has finished
[2025-10-13 17:09:12] 2025-10-13 15:08:43,948 | INFO     | [data] copytool_in thread has finished
[2025-10-13 17:09:12] 2025-10-13 15:08:44,099 | INFO     | [job] control thread has finished
[2025-10-13 17:09:12] 2025-10-13 15:08:44,160 | INFO     | [payload] validate_post thread has finished
[2025-10-13 17:09:12] 2025-10-13 15:08:44,226 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 17:09:12] 2025-10-13 15:08:44,300 | INFO     | [job] validate thread has finished
[2025-10-13 17:09:12] 2025-10-13 15:08:45,327 | INFO     | [data] copytool_out thread has finished
[2025-10-13 17:09:12] 2025-10-13 15:08:47,606 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 17:09:12] 2025-10-13 15:08:52,921 | INFO     | job.realtimelogging is not enabled
[2025-10-13 17:09:12] 2025-10-13 15:08:53,927 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 17:09:12] 2025-10-13 15:08:59,096 | INFO     | [monitor] cgroup control has ended
[2025-10-13 17:09:12] 2025-10-13 15:09:00,102 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140343920785216)>', '<ExcThread(monitor, started 140343156668160)>']
[2025-10-13 17:09:12] 2025-10-13 15:09:05,114 | INFO     | all workflow threads have been joined
[2025-10-13 17:09:12] 2025-10-13 15:09:05,114 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 17:09:12] 2025-10-13 15:09:05,115 | INFO     | traces error code: 0
[2025-10-13 17:09:12] 2025-10-13 15:09:05,115 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 17:09:12] 2025-10-13 15:09:12,036 | INFO     | PID=2583184 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 17:09:12] 2025-10-13 15:09:12,036 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 17:09:12] 2025-10-13 15:09:12,036 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 17:09:12] 2025-10-13 15:09:12,037 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 17:09:12] 2025-10-13 15:09:12,037 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 17:09:12] 2025-10-13 15:09:12,037 | INFO     | [monitor] control thread has ended
[2025-10-13 17:09:12] 2025-10-13 15:09:12,076 [wrapper] ==== pilot stdout END ====
[2025-10-13 17:09:12] 2025-10-13 15:09:12,079 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 17:09:12] 2025-10-13 15:09:12,081 [wrapper] pilotpid: 2583184
[2025-10-13 17:09:12] 2025-10-13 15:09:12,084 [wrapper] Pilot exit status: 0
[2025-10-13 17:09:12] 2025-10-13 15:09:12,089 [wrapper] pandaids: 6840715333
[2025-10-13 17:09:12] 2025-10-13 15:09:12,100 [wrapper] cleanup supervisor_pilot 2603856 2583185
[2025-10-13 17:09:12] 2025-10-13 15:09:12,102 [wrapper] Test setup, not cleaning
[2025-10-13 17:09:12] 2025-10-13 15:09:12,104 [wrapper] apfmon messages muted
[2025-10-13 17:09:12] 2025-10-13 15:09:12,106 [wrapper] ==== wrapper stdout END ====
[2025-10-13 17:09:12] 2025-10-13 15:09:12,108 [wrapper] ==== wrapper stderr END ====
[2025-10-13 17:09:12]  *** Error codes and diagnostics ***
[2025-10-13 17:09:12]     "exeErrorCode": 0,
[2025-10-13 17:09:12]     "exeErrorDiag": "",
[2025-10-13 17:09:12]     "pilotErrorCode": 0,
[2025-10-13 17:09:12]     "pilotErrorDiag": "",
[2025-10-13 17:09:12]  *** Listing of results directory ***
[2025-10-13 17:09:12] total 410056
[2025-10-13 17:09:12] -rw-r--r-- 1 boinc boinc      5112 Oct 12 22:08 queuedata.json
[2025-10-13 17:09:12] -rw-r--r-- 1 boinc boinc    557409 Oct 12 22:08 pilot3.tar.gz
[2025-10-13 17:09:12] -rwx------ 1 boinc boinc     36292 Oct 12 22:09 runpilot2-wrapper.sh
[2025-10-13 17:09:12] -rw-r--r-- 1 boinc boinc       100 Oct 13 15:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 17:09:12] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 15:05 run_atlas
[2025-10-13 17:09:12] -rw-r--r-- 1 boinc boinc       105 Oct 13 15:05 job.xml
[2025-10-13 17:09:12] -rw-r--r-- 2 boinc boinc 222250554 Oct 13 15:05 EVNT.46676267._004486.pool.root.1
[2025-10-13 17:09:12] -rw-r--r-- 2 boinc boinc    569682 Oct 13 15:05 input.tar.gz
[2025-10-13 17:09:12] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:05 start_atlas.sh
[2025-10-13 17:09:12] drwxrwx--x 2 boinc boinc      4096 Oct 13 15:05 shared
[2025-10-13 17:09:12] -rw-r--r-- 1 boinc boinc         0 Oct 13 15:05 boinc_setup_complete
[2025-10-13 17:09:12] -rw-r--r-- 1 boinc boinc      6209 Oct 13 15:05 init_data.xml
[2025-10-13 17:09:12] -rw-r--r-- 1 boinc boinc         0 Oct 13 15:05 boinc_lockfile
[2025-10-13 17:09:12] -rw-r--r-- 1 boinc boinc      2550 Oct 13 15:05 pandaJob.out
[2025-10-13 17:09:12] -rw------- 1 boinc boinc    972497 Oct 13 15:05 agis_schedconf.cvmfs.json
[2025-10-13 17:09:12] -rw------- 1 boinc boinc   1560580 Oct 13 15:05 agis_ddmendpoints.agis.ALL.json
[2025-10-13 17:09:12] drwx------ 5 boinc boinc      4096 Oct 13 15:05 pilot3
[2025-10-13 17:09:12] -rw------- 1 boinc boinc 191116153 Oct 13 17:08 HITS.46676269._088285.pool.root.1
[2025-10-13 17:09:12] -rw------- 1 boinc boinc        95 Oct 13 17:08 pilot_heartbeat.json
[2025-10-13 17:09:12] -rw-r--r-- 1 boinc boinc       529 Oct 13 17:08 boinc_task_state.xml
[2025-10-13 17:09:12] -rw------- 1 boinc boinc      1018 Oct 13 17:08 memory_monitor_summary.json
[2025-10-13 17:09:12] -rw------- 1 boinc boinc    262091 Oct 13 17:08 log.46676269._088285.job.log.tgz.1
[2025-10-13 17:09:12] -rw------- 1 boinc boinc      7756 Oct 13 17:08 heartbeat.json
[2025-10-13 17:09:12] -rw-r--r-- 1 boinc boinc        27 Oct 13 17:09 wrapper_checkpoint.txt
[2025-10-13 17:09:12] -rw-r--r-- 1 boinc boinc      8192 Oct 13 17:09 boinc_mmap_file
[2025-10-13 17:09:12] -rw------- 1 boinc boinc       747 Oct 13 17:09 pilotlog.txt
[2025-10-13 17:09:12] -rw------- 1 boinc boinc   1064306 Oct 13 17:09 log.46676269._088285.job.log.1
[2025-10-13 17:09:12] -rw------- 1 boinc boinc       357 Oct 13 17:09 output.list
[2025-10-13 17:09:12] -rw-r--r-- 1 boinc boinc       620 Oct 13 17:09 runtime_log
[2025-10-13 17:09:12] -rw------- 1 boinc boinc   1341440 Oct 13 17:09 result.tar.gz
[2025-10-13 17:09:12] -rw-r--r-- 1 boinc boinc      8797 Oct 13 17:09 runtime_log.err
[2025-10-13 17:09:12] -rw------- 1 boinc boinc       663 Oct 13 17:09 at6NDmyYHS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmEvUMDmPoPElm.diag
[2025-10-13 17:09:12] -rw-r--r-- 1 boinc boinc     11515 Oct 13 17:09 stderr.txt
[2025-10-13 17:09:12] HITS file was successfully produced:
[2025-10-13 17:09:12] -rw------- 1 boinc boinc 191116153 Oct 13 17:08 shared/HITS.pool.root.1
[2025-10-13 17:09:12]  *** Contents of shared directory: ***
[2025-10-13 17:09:12] total 405576
[2025-10-13 17:09:12] -rw-r--r-- 2 boinc boinc 222250554 Oct 13 15:05 ATLAS.root_0
[2025-10-13 17:09:12] -rw-r--r-- 2 boinc boinc    569682 Oct 13 15:05 input.tar.gz
[2025-10-13 17:09:12] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:05 start_atlas.sh
[2025-10-13 17:09:12] -rw------- 1 boinc boinc 191116153 Oct 13 17:08 HITS.pool.root.1
[2025-10-13 17:09:12] -rw------- 1 boinc boinc   1341440 Oct 13 17:09 result.tar.gz
17:09:14 (2579478): run_atlas exited; CPU time 14338.759040
17:09:14 (2579478): called boinc_finish(0)

</stderr_txt>
]]>

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