Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:00:04 (27020): wrapper (7.7.26015): starting
14:00:04 (27020): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 14:00:04] Arguments: --nthreads 8
[2025-10-13 14:00:04] Threads: 8
[2025-10-13 14:00:04] Checking for CVMFS
[2025-10-13 14:00:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 14:00:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 14:00:05] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 14:00:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 14:00:07] 2.11.2.0 23110 221816 136636 151660 3 196 17945805 25165824 4632 130560 0 109056481 99.870 69199152 3466 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-13 14:00:07] CVMFS is ok
[2025-10-13 14:00:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 14:00:07] Checking for apptainer binary...
[2025-10-13 14:00:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 14:00:07] Running /usr/bin/apptainer --version
[2025-10-13 14:00:07] apptainer version 1.3.2-1.el7
[2025-10-13 14:00:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 14:00:29] cg-vwn378.simple-grid.lan
[2025-10-13 14:00:29] apptainer works
[2025-10-13 14:00:29] Set ATHENA_PROC_NUMBER=8
[2025-10-13 14:00:29] Set ATHENA_CORE_NUMBER=8
[2025-10-13 14:00:29] Starting ATLAS job with PandaID=6840854029
[2025-10-13 14:00:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 18:21:40]  *** The last 200 lines of the pilot log: ***
[2025-10-13 18:21:40] 2025-10-13 16:20:27,951 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 18:21:40] 2025-10-13 16:20:27,957 | INFO     | fitting pss+swap vs Time
[2025-10-13 18:21:40] 2025-10-13 16:20:27,957 | INFO     | sum of square deviations: 4449281562.0
[2025-10-13 18:21:40] 2025-10-13 16:20:27,959 | INFO     | sum of deviations: 54548845936.00002
[2025-10-13 18:21:40] 2025-10-13 16:20:27,960 | INFO     | mean x: 1760364892.0
[2025-10-13 18:21:40] 2025-10-13 16:20:27,960 | INFO     | mean y: 2464262.477366255
[2025-10-13 18:21:40] 2025-10-13 16:20:27,960 | INFO     | -- intersect: -21579868063.932346
[2025-10-13 18:21:40] 2025-10-13 16:20:27,960 | INFO     | intersect: -21579868063.932346
[2025-10-13 18:21:40] 2025-10-13 16:20:27,960 | INFO     | chi2: 6.111358490365555
[2025-10-13 18:21:40] 2025-10-13 16:20:27,961 | INFO     | sum of square deviations: 4180243959.5
[2025-10-13 18:21:40] 2025-10-13 16:20:27,963 | INFO     | sum of deviations: 69638807525.49998
[2025-10-13 18:21:40] 2025-10-13 16:20:27,963 | INFO     | mean x: 1760364739.5
[2025-10-13 18:21:40] 2025-10-13 16:20:27,963 | INFO     | mean y: 2472663.5336134452
[2025-10-13 18:21:40] 2025-10-13 16:20:27,963 | INFO     | -- intersect: -29323495499.19065
[2025-10-13 18:21:40] 2025-10-13 16:20:27,963 | INFO     | intersect: -29323495499.19065
[2025-10-13 18:21:40] 2025-10-13 16:20:27,964 | INFO     | chi2: 5.387135373772608
[2025-10-13 18:21:40] 2025-10-13 16:20:27,964 | INFO     | current chi2=5.387135373772608 (change=11.850444017229092 %)
[2025-10-13 18:21:40] 2025-10-13 16:20:27,964 | INFO     | right removable region: 237
[2025-10-13 18:21:40] 2025-10-13 16:20:27,964 | INFO     | sum of square deviations: 4180243959.5
[2025-10-13 18:21:40] 2025-10-13 16:20:27,966 | INFO     | sum of deviations: -26292403762.499996
[2025-10-13 18:21:40] 2025-10-13 16:20:27,967 | INFO     | mean x: 1760365044.5
[2025-10-13 18:21:40] 2025-10-13 16:20:27,967 | INFO     | mean y: 2510039.617647059
[2025-10-13 18:21:40] 2025-10-13 16:20:27,967 | INFO     | -- intersect: 11074645773.275005
[2025-10-13 18:21:40] 2025-10-13 16:20:27,967 | INFO     | intersect: 11074645773.275005
[2025-10-13 18:21:40] 2025-10-13 16:20:27,967 | INFO     | chi2: 1.7830078792298334
[2025-10-13 18:21:40] 2025-10-13 16:20:27,968 | INFO     | current chi2=1.7830078792298334 (change=70.82468845444573 %)
[2025-10-13 18:21:40] 2025-10-13 16:20:27,968 | INFO     | sum of square deviations: 3922276332.0
[2025-10-13 18:21:40] 2025-10-13 16:20:27,970 | INFO     | sum of deviations: -57102672180.0
[2025-10-13 18:21:40] 2025-10-13 16:20:27,970 | INFO     | mean x: 1760365197.0
[2025-10-13 18:21:40] 2025-10-13 16:20:27,970 | INFO     | mean y: 2528117.7424892704
[2025-10-13 18:21:40] 2025-10-13 16:20:27,970 | INFO     | -- intersect: 25630900076.460495
[2025-10-13 18:21:40] 2025-10-13 16:20:27,971 | INFO     | intersect: 25630900076.460495
[2025-10-13 18:21:40] 2025-10-13 16:20:27,971 | INFO     | chi2: 0.9109392896427803
[2025-10-13 18:21:40] 2025-10-13 16:20:27,971 | INFO     | current chi2=0.9109392896427803 (change=48.90996835996829 %)
[2025-10-13 18:21:40] 2025-10-13 16:20:27,972 | INFO     | sum of square deviations: 3675146117.0
[2025-10-13 18:21:40] 2025-10-13 16:20:27,974 | INFO     | sum of deviations: -57426497237.50001
[2025-10-13 18:21:40] 2025-10-13 16:20:27,974 | INFO     | mean x: 1760365349.5
[2025-10-13 18:21:40] 2025-10-13 16:20:27,974 | INFO     | mean y: 2528289.8552631577
[2025-10-13 18:21:40] 2025-10-13 16:20:27,974 | INFO     | -- intersect: 27509357314.26776
[2025-10-13 18:21:40] 2025-10-13 16:20:27,974 | INFO     | intersect: 27509357314.26776
[2025-10-13 18:21:40] 2025-10-13 16:20:27,975 | INFO     | chi2: 0.894899109745758
[2025-10-13 18:21:40] 2025-10-13 16:20:27,975 | INFO     | current chi2=0.894899109745758 (change=1.7608396167995224 %)
[2025-10-13 18:21:40] 2025-10-13 16:20:27,975 | INFO     | left removable region: 30
[2025-10-13 18:21:40] 2025-10-13 16:20:27,975 | INFO     | sum of square deviations: 2750295288.0
[2025-10-13 18:21:40] 2025-10-13 16:20:27,977 | INFO     | sum of deviations: -29282311350.999996
[2025-10-13 18:21:40] 2025-10-13 16:20:27,977 | INFO     | mean x: 1760365624.0
[2025-10-13 18:21:40] 2025-10-13 16:20:27,977 | INFO     | mean y: 2530547.473429952
[2025-10-13 18:21:40] 2025-10-13 16:20:27,977 | INFO     | -- intersect: 18745090489.482605
[2025-10-13 18:21:40] 2025-10-13 16:20:27,977 | INFO     | intersect: 18745090489.482605
[2025-10-13 18:21:40] 2025-10-13 16:20:27,978 | INFO     | chi2: 0.09755823890063584
[2025-10-13 18:21:40] 2025-10-13 16:20:27,978 | INFO     | -- intersect: 18745090489.482605
[2025-10-13 18:21:40] 2025-10-13 16:20:27,978 | INFO     | current memory leak: -10.65 B/s (using 207 data points, chi2=0.10)
[2025-10-13 18:21:40] 2025-10-13 16:20:27,979 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-13 18:21:40] 2025-10-13 16:20:27,979 | INFO     | ..............................
[2025-10-13 18:21:40] 2025-10-13 16:20:27,979 | INFO     | . Timing measurements:
[2025-10-13 18:21:40] 2025-10-13 16:20:27,979 | INFO     | . get job = 0 s
[2025-10-13 18:21:40] 2025-10-13 16:20:27,979 | INFO     | . initial setup = 9 s
[2025-10-13 18:21:40] 2025-10-13 16:20:27,980 | INFO     | . payload setup = 120 s
[2025-10-13 18:21:40] 2025-10-13 16:20:27,980 | INFO     | . stage-in = 0 s
[2025-10-13 18:21:40] 2025-10-13 16:20:27,980 | INFO     | . payload execution = 14966 s
[2025-10-13 18:21:40] 2025-10-13 16:20:27,980 | INFO     | . stage-out = 5 s
[2025-10-13 18:21:40] 2025-10-13 16:20:27,980 | INFO     | . log creation = 1 s
[2025-10-13 18:21:40] 2025-10-13 16:20:27,980 | INFO     | ..............................
[2025-10-13 18:21:40] 2025-10-13 16:20:28,114 | INFO     | 
[2025-10-13 18:21:40] 2025-10-13 16:20:28,115 | INFO     | job summary report
[2025-10-13 18:21:40] 2025-10-13 16:20:28,115 | INFO     | --------------------------------------------------
[2025-10-13 18:21:40] 2025-10-13 16:20:28,115 | INFO     | PanDA job id: 6840854029
[2025-10-13 18:21:40] 2025-10-13 16:20:28,115 | INFO     | task id: 46676269
[2025-10-13 18:21:40] 2025-10-13 16:20:28,115 | INFO     | errors: (none)
[2025-10-13 18:21:40] 2025-10-13 16:20:28,115 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 18:21:40] 2025-10-13 16:20:28,115 | INFO     | pilot state: finished 
[2025-10-13 18:21:40] 2025-10-13 16:20:28,115 | INFO     | transexitcode: 0
[2025-10-13 18:21:40] 2025-10-13 16:20:28,115 | INFO     | exeerrorcode: 0
[2025-10-13 18:21:40] 2025-10-13 16:20:28,116 | INFO     | exeerrordiag: 
[2025-10-13 18:21:40] 2025-10-13 16:20:28,116 | INFO     | exitcode: 0
[2025-10-13 18:21:40] 2025-10-13 16:20:28,116 | INFO     | exitmsg: OK
[2025-10-13 18:21:40] 2025-10-13 16:20:28,116 | INFO     | cpuconsumptiontime: 56393 s
[2025-10-13 18:21:40] 2025-10-13 16:20:28,116 | INFO     | nevents: 400
[2025-10-13 18:21:40] 2025-10-13 16:20:28,116 | INFO     | neventsw: 0
[2025-10-13 18:21:40] 2025-10-13 16:20:28,116 | INFO     | pid: 5020
[2025-10-13 18:21:40] 2025-10-13 16:20:28,116 | INFO     | pgrp: 5020
[2025-10-13 18:21:40] 2025-10-13 16:20:28,116 | INFO     | corecount: 8
[2025-10-13 18:21:40] 2025-10-13 16:20:28,116 | INFO     | event service: False
[2025-10-13 18:21:40] 2025-10-13 16:20:28,117 | INFO     | sizes: {0: 2348631, 1: 2348886, 2: 2348886, 12: 2348914, 23: 2348942, 34: 2348970, 44: 2349126, 55: 2349154, 66: 2349182, 76: 2349210, 87: 2349266, 89: 2349836, 98
[2025-10-13 18:21:40] 2025-10-13 16:20:28,117 | INFO     | --------------------------------------------------
[2025-10-13 18:21:40] 2025-10-13 16:20:28,117 | INFO     | 
[2025-10-13 18:21:40] 2025-10-13 16:20:28,117 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-10-13 18:21:40] 2025-10-13 16:20:28,569 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 18:21:40] 2025-10-13 16:20:28,569 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 18:21:40] 2025-10-13 16:20:28,569 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 18:21:40] 2025-10-13 16:20:28,569 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 18:21:40] 2025-10-13 16:20:28,569 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 18:21:40] 2025-10-13 16:20:28,569 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 18:21:40] 2025-10-13 16:20:28,570 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 18:21:40] 2025-10-13 16:20:28,570 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 18:21:40] 2025-10-13 16:20:28,570 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 18:21:40] 2025-10-13 16:20:28,570 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 18:21:40] 2025-10-13 16:20:28,570 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 18:21:40] 2025-10-13 16:20:28,570 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 18:21:40] 2025-10-13 16:20:28,570 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 18:21:40] 2025-10-13 16:20:28,570 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 18:21:40] 2025-10-13 16:20:28,570 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 18:21:40] 2025-10-13 16:20:28,570 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 18:21:40] 2025-10-13 16:20:28,570 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 18:21:40] 2025-10-13 16:20:28,570 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 18:21:40] 2025-10-13 16:20:28,571 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 18:21:40] 2025-10-13 16:20:28,571 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 18:21:40] 2025-10-13 16:20:28,571 | INFO     | job 6840854029 has completed (purged errors)
[2025-10-13 18:21:40] 2025-10-13 16:20:28,571 | INFO     | overall cleanup function is called
[2025-10-13 18:21:40] 2025-10-13 16:20:29,580 | INFO     | --- collectZombieJob: --- 10, [5020]
[2025-10-13 18:21:40] 2025-10-13 16:20:29,581 | INFO     | zombie collector waiting for pid 5020
[2025-10-13 18:21:40] 2025-10-13 16:20:29,581 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 18:21:40] 2025-10-13 16:20:29,581 | INFO     | collected zombie processes
[2025-10-13 18:21:40] 2025-10-13 16:20:29,581 | INFO     | will attempt to kill all subprocesses of pid=5020
[2025-10-13 18:21:40] 2025-10-13 16:20:29,727 | INFO     | process IDs to be killed: [5020] (in reverse order)
[2025-10-13 18:21:40] 2025-10-13 16:20:30,556 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 18:21:40] 2025-10-13 16:20:30,556 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 18:21:40] 2025-10-13 16:20:30,560 | INFO     | did not find any defunct processes belonging to 5020
[2025-10-13 18:21:40] 2025-10-13 16:20:30,564 | INFO     | did not find any defunct processes belonging to 5020
[2025-10-13 18:21:40] 2025-10-13 16:20:30,564 | INFO     | ready for new job
[2025-10-13 18:21:40] 2025-10-13 16:20:30,564 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 18:21:40] 2025-10-13 16:20:30,566 | INFO     | ***************************************
[2025-10-13 18:21:40] 2025-10-13 16:20:30,567 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 18:21:40] 2025-10-13 16:20:30,567 | INFO     | ***************************************
[2025-10-13 18:21:40] 2025-10-13 16:20:30,567 | INFO     | 
[2025-10-13 18:21:40] 2025-10-13 16:20:30,568 | INFO     | pilot is running in a VM
[2025-10-13 18:21:40] 2025-10-13 16:20:30,568 | INFO     | architecture information:
[2025-10-13 18:21:40] 2025-10-13 16:20:30,576 | INFO     | executing command: cat /etc/os-release
[2025-10-13 18:21:40] 2025-10-13 16:20:30,867 | INFO     | cat /etc/os-release:
[2025-10-13 18:21:40] NAME="CentOS Linux"
[2025-10-13 18:21:40] VERSION="7 (Core)"
[2025-10-13 18:21:40] ID="centos"
[2025-10-13 18:21:40] ID_LIKE="rhel fedora"
[2025-10-13 18:21:40] VERSION_ID="7"
[2025-10-13 18:21:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 18:21:40] ANSI_COLOR="0;31"
[2025-10-13 18:21:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 18:21:40] HOME_URL="https://www.centos.org/"
[2025-10-13 18:21:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 18:21:40] 
[2025-10-13 18:21:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 18:21:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 18:21:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 18:21:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 18:21:40] 
[2025-10-13 18:21:40] 2025-10-13 16:20:30,867 | INFO     | ***************************************
[2025-10-13 18:21:40] 2025-10-13 16:20:31,369 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-10-13 18:21:40] 2025-10-13 16:20:31,635 | INFO     | sufficient remaining disk space (496027828224 B)
[2025-10-13 18:21:40] 2025-10-13 16:20:31,635 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 18:21:40] 2025-10-13 16:20:31,635 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 18:21:40] 2025-10-13 16:20:31,636 | INFO     | update_server=False
[2025-10-13 18:21:40] 2025-10-13 16:20:31,636 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 18:21:40] 2025-10-13 16:20:31,640 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 18:21:40] 2025-10-13 16:20:31,641 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 18:21:40] 2025-10-13 16:20:31,879 | INFO     | all payload control threads have been joined
[2025-10-13 18:21:40] 2025-10-13 16:20:31,990 | INFO     | all data control threads have been joined
[2025-10-13 18:21:40] 2025-10-13 16:20:32,257 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:21:40] 2025-10-13 16:20:32,258 | INFO     | aborting loop
[2025-10-13 18:21:40] 2025-10-13 16:20:32,353 | INFO     | all job control threads have been joined
[2025-10-13 18:21:40] 2025-10-13 16:20:32,644 | INFO     | [job] retrieve thread has finished
[2025-10-13 18:21:40] 2025-10-13 16:20:32,661 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 18:21:40] 2025-10-13 16:20:32,690 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 18:21:40] 2025-10-13 16:20:32,717 | INFO     | [data] copytool_in thread has finished
[2025-10-13 18:21:40] 2025-10-13 16:20:32,885 | INFO     | [payload] control thread has finished
[2025-10-13 18:21:40] 2025-10-13 16:20:32,996 | INFO     | [data] control thread has finished
[2025-10-13 18:21:40] 2025-10-13 16:20:33,131 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:21:40] 2025-10-13 16:20:33,263 | INFO     | [job] job monitor thread has finished
[2025-10-13 18:21:40] 2025-10-13 16:20:33,359 | INFO     | [job] control thread has finished
[2025-10-13 18:21:40] 2025-10-13 16:20:33,369 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 18:21:40] 2025-10-13 16:20:33,584 | INFO     | [payload] validate_post thread has finished
[2025-10-13 18:21:40] 2025-10-13 16:20:33,647 | INFO     | [data] copytool_out thread has finished
[2025-10-13 18:21:40] 2025-10-13 16:20:33,649 | INFO     | [job] validate thread has finished
[2025-10-13 18:21:40] 2025-10-13 16:20:33,712 | INFO     | [payload] failed_post thread has finished
[2025-10-13 18:21:40] 2025-10-13 16:20:33,714 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 18:21:40] 2025-10-13 16:20:34,138 | INFO     | [job] queue monitor thread has finished
[2025-10-13 18:21:40] 2025-10-13 16:20:35,649 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 18:21:40] 2025-10-13 16:20:59,778 | INFO     | 15394s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-13 18:21:40] 2025-10-13 16:21:00,935 | INFO     | PID=30822 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 18:21:40] 2025-10-13 16:21:00,935 | INFO     | .. there are 9 such processes running
[2025-10-13 18:21:40] 2025-10-13 16:21:00,936 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 18:21:40] 2025-10-13 16:21:00,936 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 18:21:40] 2025-10-13 16:21:00,936 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 18:21:40] 2025-10-13 16:21:30,047 | INFO     | [monitor] cgroup control has ended
[2025-10-13 18:21:40] 2025-10-13 16:21:30,396 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139854942127936)>', '<ExcThread(monitor, started 139854495065856)>']
[2025-10-13 18:21:40] 2025-10-13 16:21:31,112 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 18:21:40] 2025-10-13 16:21:31,112 | INFO     | [monitor] control thread has ended
[2025-10-13 18:21:40] 2025-10-13 16:21:35,422 | INFO     | all workflow threads have been joined
[2025-10-13 18:21:40] 2025-10-13 16:21:35,423 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 18:21:40] 2025-10-13 16:21:35,423 | INFO     | traces error code: 0
[2025-10-13 18:21:40] 2025-10-13 16:21:35,423 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 18:21:40] 2025-10-13 16:21:35,838 [wrapper] ==== pilot stdout END ====
[2025-10-13 18:21:40] 2025-10-13 16:21:35,935 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 18:21:40] 2025-10-13 16:21:36,016 [wrapper] pilotpid: 30822
[2025-10-13 18:21:40] 2025-10-13 16:21:36,069 [wrapper] Pilot exit status: 0
[2025-10-13 18:21:40] 2025-10-13 16:21:36,549 [wrapper] pandaids: 6840854029
[2025-10-13 18:21:40] 2025-10-13 16:21:37,287 [wrapper] cleanup supervisor_pilot 31841 30823
[2025-10-13 18:21:40] 2025-10-13 16:21:37,365 [wrapper] Test setup, not cleaning
[2025-10-13 18:21:40] 2025-10-13 16:21:37,440 [wrapper] apfmon messages muted
[2025-10-13 18:21:40] 2025-10-13 16:21:37,555 [wrapper] ==== wrapper stdout END ====
[2025-10-13 18:21:40] 2025-10-13 16:21:37,676 [wrapper] ==== wrapper stderr END ====
[2025-10-13 18:21:40]  *** Error codes and diagnostics ***
[2025-10-13 18:21:40]     "exeErrorCode": 0,
[2025-10-13 18:21:40]     "exeErrorDiag": "",
[2025-10-13 18:21:40]     "pilotErrorCode": 0,
[2025-10-13 18:21:40]     "pilotErrorDiag": "",
[2025-10-13 18:21:40]  *** Listing of results directory ***
[2025-10-13 18:21:40] total 421632
[2025-10-13 18:21:40] -rw-r--r--. 1 boinc boinc    557409 Oct 13 00:49 pilot3.tar.gz
[2025-10-13 18:21:40] -rwx------. 1 boinc boinc     36292 Oct 13 00:53 runpilot2-wrapper.sh
[2025-10-13 18:21:40] -rw-r--r--. 1 boinc boinc      5112 Oct 13 00:53 queuedata.json
[2025-10-13 18:21:40] -rw-r--r--. 1 boinc boinc       100 Oct 13 14:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 18:21:40] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 14:00 run_atlas
[2025-10-13 18:21:40] -rw-r--r--. 1 boinc boinc       105 Oct 13 14:00 job.xml
[2025-10-13 18:21:40] -rw-r--r--. 1 boinc boinc      6392 Oct 13 14:00 init_data.xml
[2025-10-13 18:21:40] -rw-r--r--. 2 boinc boinc 222876307 Oct 13 14:00 EVNT.46676267._004635.pool.root.1
[2025-10-13 18:21:40] -rw-r--r--. 2 boinc boinc     15120 Oct 13 14:00 start_atlas.sh
[2025-10-13 18:21:40] drwxrwx--x. 2 boinc boinc        68 Oct 13 14:00 shared
[2025-10-13 18:21:40] -rw-r--r--. 2 boinc boinc    569675 Oct 13 14:00 input.tar.gz
[2025-10-13 18:21:40] -rw-r--r--. 1 boinc boinc         0 Oct 13 14:00 boinc_lockfile
[2025-10-13 18:21:40] -rw-r--r--. 1 boinc boinc      2550 Oct 13 14:00 pandaJob.out
[2025-10-13 18:21:40] -rw-------. 1 boinc boinc    972497 Oct 13 14:03 agis_schedconf.cvmfs.json
[2025-10-13 18:21:40] drwx------. 5 boinc boinc      4096 Oct 13 14:04 pilot3
[2025-10-13 18:21:40] -rw-------. 1 boinc boinc 199924924 Oct 13 18:17 HITS.46676269._091599.pool.root.1
[2025-10-13 18:21:40] -rw-r--r--. 1 boinc boinc       531 Oct 13 18:17 boinc_task_state.xml
[2025-10-13 18:21:40] -rw-------. 1 boinc boinc      1011 Oct 13 18:18 memory_monitor_summary.json
[2025-10-13 18:21:40] -rw-------. 1 boinc boinc   1560580 Oct 13 18:18 agis_ddmendpoints.agis.ALL.json
[2025-10-13 18:21:40] -rw-------. 1 boinc boinc    473473 Oct 13 18:18 log.46676269._091599.job.log.tgz.1
[2025-10-13 18:21:40] -rw-------. 1 boinc boinc        95 Oct 13 18:20 pilot_heartbeat.json
[2025-10-13 18:21:40] -rw-------. 1 boinc boinc      7784 Oct 13 18:20 heartbeat.json
[2025-10-13 18:21:40] -rw-r--r--. 1 boinc boinc      8192 Oct 13 18:21 boinc_mmap_file
[2025-10-13 18:21:40] -rw-r--r--. 1 boinc boinc        28 Oct 13 18:21 wrapper_checkpoint.txt
[2025-10-13 18:21:40] -rw-------. 1 boinc boinc      5001 Oct 13 18:21 pilotlog.txt
[2025-10-13 18:21:40] -rw-------. 1 boinc boinc   2056490 Oct 13 18:21 log.46676269._091599.job.log.1
[2025-10-13 18:21:40] -rw-------. 1 boinc boinc       357 Oct 13 18:21 output.list
[2025-10-13 18:21:40] -rw-r--r--. 1 boinc boinc       620 Oct 13 18:21 runtime_log
[2025-10-13 18:21:40] -rw-------. 1 boinc boinc   2549760 Oct 13 18:21 result.tar.gz
[2025-10-13 18:21:40] -rw-r--r--. 1 boinc boinc      8717 Oct 13 18:21 runtime_log.err
[2025-10-13 18:21:40] -rw-------. 1 boinc boinc       657 Oct 13 18:21 QgMODmm7JS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmHEVMDmpaqKbm.diag
[2025-10-13 18:21:40] -rw-r--r--. 1 boinc boinc     20652 Oct 13 18:21 stderr.txt
[2025-10-13 18:21:40] HITS file was successfully produced:
[2025-10-13 18:21:40] -rw-------. 1 boinc boinc 199924924 Oct 13 18:17 shared/HITS.pool.root.1
[2025-10-13 18:21:40]  *** Contents of shared directory: ***
[2025-10-13 18:21:40] total 415964
[2025-10-13 18:21:40] -rw-r--r--. 2 boinc boinc 222876307 Oct 13 14:00 ATLAS.root_0
[2025-10-13 18:21:40] -rw-r--r--. 2 boinc boinc     15120 Oct 13 14:00 start_atlas.sh
[2025-10-13 18:21:40] -rw-r--r--. 2 boinc boinc    569675 Oct 13 14:00 input.tar.gz
[2025-10-13 18:21:40] -rw-------. 1 boinc boinc 199924924 Oct 13 18:17 HITS.pool.root.1
[2025-10-13 18:21:40] -rw-------. 1 boinc boinc   2549760 Oct 13 18:21 result.tar.gz
18:21:41 (27020): run_atlas exited; CPU time 56608.681054
18:21:41 (27020): called boinc_finish(0)

</stderr_txt>
]]>

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