Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:31:41 (30176): wrapper (7.7.26015): starting
23:31:41 (30176): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 23:31:41] Arguments: --nthreads 12
[2025-10-12 23:31:41] Threads: 12
[2025-10-12 23:31:41] Checking for CVMFS
[2025-10-12 23:31:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 23:31:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 23:31:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 23:31:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 23:31:42] 2.11.2.0 3009 9052 85244 151647 2 57 19183538 20275201 1 130560 0 8707103 99.993 303692 43571 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 23:31:42] CVMFS is ok
[2025-10-12 23:31:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 23:31:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 23:31:42] Further information can be found at the LHC@home message board.
[2025-10-12 23:31:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 23:31:42] Checking for apptainer binary...
[2025-10-12 23:31:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 23:31:42] Running /usr/bin/apptainer --version
[2025-10-12 23:31:42] apptainer version 1.3.2-1.el7
[2025-10-12 23:31:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 23:31:43] c-115-42.aglt2.org
[2025-10-12 23:31:43] apptainer works
[2025-10-12 23:31:43] Set ATHENA_PROC_NUMBER=12
[2025-10-12 23:31:43] Set ATHENA_CORE_NUMBER=12
[2025-10-12 23:31:43] Starting ATLAS job with PandaID=6840850813
[2025-10-12 23:31:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 00:35:32]  *** The last 200 lines of the pilot log: ***
[2025-10-13 00:35:32]  mtime=0
[2025-10-13 00:35:32]  protocol_id=None
[2025-10-13 00:35:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 00:35:32]  replicas=None
[2025-10-13 00:35:32]  scope=mc23_13p6TeV
[2025-10-13 00:35:32]  status=None
[2025-10-13 00:35:32]  status_code=0
[2025-10-13 00:35:32]  storage_token=
[2025-10-13 00:35:32]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840850813/log.46676269._090761.job.log.tgz.1
[2025-10-13 00:35:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5b/8c/log.46676269._090761.job.log.tgz.1
[2025-10-13 00:35:32]  workdir=None
[2025-10-13 00:35:32] ]
[2025-10-13 00:35:32] 2025-10-13 04:34:54,788 | INFO     | transferring file log.46676269._090761.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840850813/log.46676269._090761.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 00:35:32] 2025-10-13 04:34:54,788 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840850813/log.46676269._090761.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._090761.job
[2025-10-13 00:35:32] 2025-10-13 04:34:54,810 | INFO     | adding to output.list: log.46676269._090761.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5b/8c/log.46676269._090761.job.log.tg
[2025-10-13 00:35:32] 2025-10-13 04:34:54,811 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 00:35:32] 2025-10-13 04:34:54,811 | INFO     | summary of transferred files:
[2025-10-13 00:35:32] 2025-10-13 04:34:54,811 | INFO     |  -- lfn=log.46676269._090761.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 00:35:32] 2025-10-13 04:34:54,811 | INFO     | stage-out finished correctly
[2025-10-13 00:35:32] 2025-10-13 04:34:54,887 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 00:35:32] 2025-10-13 04:34:54,963 | INFO     | job 6840850813 has state=finished
[2025-10-13 00:35:32] 2025-10-13 04:34:54,963 | INFO     | preparing for final server update for job 6840850813 in state='finished'
[2025-10-13 00:35:32] 2025-10-13 04:34:54,964 | INFO     | this job has now completed (state=finished)
[2025-10-13 00:35:32] 2025-10-13 04:34:54,964 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 00:35:32] 2025-10-13 04:34:54,964 | INFO     | log transfer has been attempted: DONE
[2025-10-13 00:35:32] 2025-10-13 04:34:54,964 | INFO     | job 6840850813 has finished - writing final server update
[2025-10-13 00:35:32] 2025-10-13 04:34:54,964 | INFO     | total number of processed events: 400 (read)
[2025-10-13 00:35:32] 2025-10-13 04:34:54,965 | INFO     | executing command: lscpu
[2025-10-13 00:35:32] 2025-10-13 04:34:54,991 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 00:35:32] 2025-10-13 04:34:55,376 | INFO     | time since job start (3778s) is within the limit (172800.0s)
[2025-10-13 00:35:32] 2025-10-13 04:34:57,382 | INFO     | time since job start (3780s) is within the limit (172800.0s)
[2025-10-13 00:35:32] 2025-10-13 04:34:58,695 | WARNING  | process 8122 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 00:35:32] 2025-10-13 04:34:58,695 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840850813/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 00:35:32] 2025-10-13 04:34:58,780 | INFO     | number of running child processes to parent process 8122: 1
[2025-10-13 00:35:32] 2025-10-13 04:34:58,780 | INFO     | maximum number of monitored processes: 6
[2025-10-13 00:35:32] 2025-10-13 04:34:59,363 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 00:35:32] 2025-10-13 04:34:59,367 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-13 00:35:32] 2025-10-13 04:34:59,369 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840850813/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 00:35:32] 2025-10-13 04:34:59,370 | INFO     | extracted standard info from prmon json
[2025-10-13 00:35:32] 2025-10-13 04:34:59,370 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 00:35:32] 2025-10-13 04:34:59,370 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 00:35:32] 2025-10-13 04:34:59,370 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 00:35:32] 2025-10-13 04:34:59,370 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 00:35:32] 2025-10-13 04:34:59,372 | INFO     | fitting pss+swap vs Time
[2025-10-13 00:35:32] 2025-10-13 04:34:59,372 | INFO     | sum of square deviations: 51573060.0
[2025-10-13 00:35:32] 2025-10-13 04:34:59,373 | INFO     | sum of deviations: -5702211923.999999
[2025-10-13 00:35:32] 2025-10-13 04:34:59,373 | INFO     | mean x: 1760328297.0
[2025-10-13 00:35:32] 2025-10-13 04:34:59,373 | INFO     | mean y: 2861815.5454545454
[2025-10-13 00:35:32] 2025-10-13 04:34:59,373 | INFO     | -- intersect: 194634807356.64795
[2025-10-13 00:35:32] 2025-10-13 04:34:59,373 | INFO     | intersect: 194634807356.64795
[2025-10-13 00:35:32] 2025-10-13 04:34:59,373 | INFO     | chi2: 0.04663593424720309
[2025-10-13 00:35:32] 2025-10-13 04:34:59,374 | INFO     | -- intersect: 194634807356.64795
[2025-10-13 00:35:32] 2025-10-13 04:34:59,374 | INFO     | current memory leak: -110.57 B/s (using 55 data points, chi2=0.05)
[2025-10-13 00:35:32] 2025-10-13 04:34:59,374 | INFO     | could have reported an average CPU frequency of 2019 MHz (6 samples)
[2025-10-13 00:35:32] 2025-10-13 04:34:59,374 | INFO     | ..............................
[2025-10-13 00:35:32] 2025-10-13 04:34:59,374 | INFO     | . Timing measurements:
[2025-10-13 00:35:32] 2025-10-13 04:34:59,375 | INFO     | . get job = 0 s
[2025-10-13 00:35:32] 2025-10-13 04:34:59,375 | INFO     | . initial setup = 2 s
[2025-10-13 00:35:32] 2025-10-13 04:34:59,375 | INFO     | . payload setup = 6 s
[2025-10-13 00:35:32] 2025-10-13 04:34:59,375 | INFO     | . stage-in = 0 s
[2025-10-13 00:35:32] 2025-10-13 04:34:59,375 | INFO     | . payload execution = 3750 s
[2025-10-13 00:35:32] 2025-10-13 04:34:59,375 | INFO     | . stage-out = 0 s
[2025-10-13 00:35:32] 2025-10-13 04:34:59,375 | INFO     | . log creation = 0 s
[2025-10-13 00:35:32] 2025-10-13 04:34:59,376 | INFO     | ..............................
[2025-10-13 00:35:32] 2025-10-13 04:34:59,397 | INFO     | time since job start (3782s) is within the limit (172800.0s)
[2025-10-13 00:35:32] 2025-10-13 04:34:59,948 | INFO     | 
[2025-10-13 00:35:32] 2025-10-13 04:34:59,949 | INFO     | job summary report
[2025-10-13 00:35:32] 2025-10-13 04:34:59,949 | INFO     | --------------------------------------------------
[2025-10-13 00:35:32] 2025-10-13 04:34:59,949 | INFO     | PanDA job id: 6840850813
[2025-10-13 00:35:32] 2025-10-13 04:34:59,949 | INFO     | task id: 46676269
[2025-10-13 00:35:32] 2025-10-13 04:34:59,949 | INFO     | errors: (none)
[2025-10-13 00:35:32] 2025-10-13 04:34:59,950 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 00:35:32] 2025-10-13 04:34:59,950 | INFO     | pilot state: finished 
[2025-10-13 00:35:32] 2025-10-13 04:34:59,950 | INFO     | transexitcode: 0
[2025-10-13 00:35:32] 2025-10-13 04:34:59,950 | INFO     | exeerrorcode: 0
[2025-10-13 00:35:32] 2025-10-13 04:34:59,950 | INFO     | exeerrordiag: 
[2025-10-13 00:35:32] 2025-10-13 04:34:59,950 | INFO     | exitcode: 0
[2025-10-13 00:35:32] 2025-10-13 04:34:59,951 | INFO     | exitmsg: OK
[2025-10-13 00:35:32] 2025-10-13 04:34:59,951 | INFO     | cpuconsumptiontime: 39978 s
[2025-10-13 00:35:32] 2025-10-13 04:34:59,951 | INFO     | nevents: 400
[2025-10-13 00:35:32] 2025-10-13 04:34:59,951 | INFO     | neventsw: 0
[2025-10-13 00:35:32] 2025-10-13 04:34:59,951 | INFO     | pid: 8122
[2025-10-13 00:35:32] 2025-10-13 04:34:59,951 | INFO     | pgrp: 8122
[2025-10-13 00:35:32] 2025-10-13 04:34:59,951 | INFO     | corecount: 12
[2025-10-13 00:35:32] 2025-10-13 04:34:59,952 | INFO     | event service: False
[2025-10-13 00:35:32] 2025-10-13 04:34:59,952 | INFO     | sizes: {0: 2348686, 1: 2348885, 5: 2349147, 11: 2349203, 3760: 2374931, 3761: 2384113, 3766: 2384251}
[2025-10-13 00:35:32] 2025-10-13 04:34:59,952 | INFO     | --------------------------------------------------
[2025-10-13 00:35:32] 2025-10-13 04:34:59,952 | INFO     | 
[2025-10-13 00:35:32] 2025-10-13 04:34:59,952 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 00:35:32] 2025-10-13 04:34:59,977 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 00:35:32] 2025-10-13 04:34:59,977 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 00:35:32] 2025-10-13 04:34:59,977 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 00:35:32] 2025-10-13 04:34:59,978 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 00:35:32] 2025-10-13 04:34:59,978 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 00:35:32] 2025-10-13 04:34:59,978 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 00:35:32] 2025-10-13 04:34:59,978 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 00:35:32] 2025-10-13 04:34:59,978 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 00:35:32] 2025-10-13 04:34:59,978 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 00:35:32] 2025-10-13 04:34:59,979 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 00:35:32] 2025-10-13 04:34:59,979 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 00:35:32] 2025-10-13 04:34:59,979 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 00:35:32] 2025-10-13 04:34:59,979 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 00:35:32] 2025-10-13 04:34:59,979 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 00:35:32] 2025-10-13 04:34:59,979 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 00:35:32] 2025-10-13 04:34:59,980 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 00:35:32] 2025-10-13 04:34:59,980 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 00:35:32] 2025-10-13 04:34:59,980 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 00:35:32] 2025-10-13 04:34:59,980 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 00:35:32] 2025-10-13 04:34:59,980 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 00:35:32] 2025-10-13 04:34:59,981 | INFO     | job 6840850813 has completed (purged errors)
[2025-10-13 00:35:32] 2025-10-13 04:34:59,981 | INFO     | overall cleanup function is called
[2025-10-13 00:35:32] 2025-10-13 04:35:00,989 | INFO     | --- collectZombieJob: --- 10, [8122]
[2025-10-13 00:35:32] 2025-10-13 04:35:00,989 | INFO     | zombie collector waiting for pid 8122
[2025-10-13 00:35:32] 2025-10-13 04:35:00,989 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 00:35:32] 2025-10-13 04:35:00,989 | INFO     | collected zombie processes
[2025-10-13 00:35:32] 2025-10-13 04:35:00,990 | INFO     | will attempt to kill all subprocesses of pid=8122
[2025-10-13 00:35:32] 2025-10-13 04:35:01,074 | INFO     | process IDs to be killed: [8122] (in reverse order)
[2025-10-13 00:35:32] 2025-10-13 04:35:01,122 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 00:35:32] 2025-10-13 04:35:01,122 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 00:35:32] 2025-10-13 04:35:01,126 | INFO     | did not find any defunct processes belonging to 8122
[2025-10-13 00:35:32] 2025-10-13 04:35:01,128 | INFO     | did not find any defunct processes belonging to 8122
[2025-10-13 00:35:32] 2025-10-13 04:35:01,128 | INFO     | ready for new job
[2025-10-13 00:35:32] 2025-10-13 04:35:01,128 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 00:35:32] 2025-10-13 04:35:01,129 | INFO     | ***************************************
[2025-10-13 00:35:32] 2025-10-13 04:35:01,129 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 00:35:32] 2025-10-13 04:35:01,129 | INFO     | ***************************************
[2025-10-13 00:35:32] 2025-10-13 04:35:01,129 | INFO     | 
[2025-10-13 00:35:32] 2025-10-13 04:35:01,130 | INFO     | architecture information:
[2025-10-13 00:35:32] 2025-10-13 04:35:01,130 | INFO     | executing command: cat /etc/os-release
[2025-10-13 00:35:32] 2025-10-13 04:35:01,144 | INFO     | cat /etc/os-release:
[2025-10-13 00:35:32] NAME="CentOS Linux"
[2025-10-13 00:35:32] VERSION="7 (Core)"
[2025-10-13 00:35:32] ID="centos"
[2025-10-13 00:35:32] ID_LIKE="rhel fedora"
[2025-10-13 00:35:32] VERSION_ID="7"
[2025-10-13 00:35:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 00:35:32] ANSI_COLOR="0;31"
[2025-10-13 00:35:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 00:35:32] HOME_URL="https://www.centos.org/"
[2025-10-13 00:35:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 00:35:32] 
[2025-10-13 00:35:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 00:35:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 00:35:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 00:35:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 00:35:32] 
[2025-10-13 00:35:32] 2025-10-13 04:35:01,145 | INFO     | ***************************************
[2025-10-13 00:35:32] 2025-10-13 04:35:01,648 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 00:35:32] 2025-10-13 04:35:01,664 | INFO     | sufficient remaining disk space (18590203904 B)
[2025-10-13 00:35:32] 2025-10-13 04:35:01,665 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 00:35:32] 2025-10-13 04:35:01,665 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 00:35:32] 2025-10-13 04:35:01,665 | INFO     | update_server=False
[2025-10-13 00:35:32] 2025-10-13 04:35:01,665 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 00:35:32] 2025-10-13 04:35:01,665 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 00:35:32] 2025-10-13 04:35:02,026 | INFO     | all payload control threads have been joined
[2025-10-13 00:35:32] 2025-10-13 04:35:02,103 | INFO     | all job control threads have been joined
[2025-10-13 00:35:32] 2025-10-13 04:35:02,288 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:35:32] 2025-10-13 04:35:02,288 | INFO     | aborting loop
[2025-10-13 00:35:32] 2025-10-13 04:35:02,444 | INFO     | all data control threads have been joined
[2025-10-13 00:35:32] 2025-10-13 04:35:02,671 | INFO     | [job] retrieve thread has finished
[2025-10-13 00:35:32] 2025-10-13 04:35:02,752 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 00:35:32] 2025-10-13 04:35:02,898 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 00:35:32] 2025-10-13 04:35:03,031 | INFO     | [payload] control thread has finished
[2025-10-13 00:35:32] 2025-10-13 04:35:03,108 | INFO     | [job] control thread has finished
[2025-10-13 00:35:32] 2025-10-13 04:35:03,113 | INFO     | [monitor] cgroup control has ended
[2025-10-13 00:35:32] 2025-10-13 04:35:03,125 | INFO     | [payload] validate_post thread has finished
[2025-10-13 00:35:32] 2025-10-13 04:35:03,128 | INFO     | [data] copytool_in thread has finished
[2025-10-13 00:35:32] 2025-10-13 04:35:03,292 | INFO     | [job] job monitor thread has finished
[2025-10-13 00:35:32] 2025-10-13 04:35:03,447 | INFO     | [data] control thread has finished
[2025-10-13 00:35:32] 2025-10-13 04:35:03,497 | INFO     | [payload] failed_post thread has finished
[2025-10-13 00:35:32] 2025-10-13 04:35:03,975 | INFO     | [job] validate thread has finished
[2025-10-13 00:35:32] 2025-10-13 04:35:04,046 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 00:35:32] 2025-10-13 04:35:04,047 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 00:35:32] 2025-10-13 04:35:04,460 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:35:32] 2025-10-13 04:35:04,903 | INFO     | [data] copytool_out thread has finished
[2025-10-13 00:35:32] 2025-10-13 04:35:05,466 | INFO     | [job] queue monitor thread has finished
[2025-10-13 00:35:32] 2025-10-13 04:35:05,671 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 00:35:32] 2025-10-13 04:35:12,134 | INFO     | job.realtimelogging is not enabled
[2025-10-13 00:35:32] 2025-10-13 04:35:13,135 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 00:35:32] 2025-10-13 04:35:13,356 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140618663405376)>', '<ExcThread(monitor, started 140618076505856)>']
[2025-10-13 00:35:32] 2025-10-13 04:35:18,382 | INFO     | all workflow threads have been joined
[2025-10-13 00:35:32] 2025-10-13 04:35:18,382 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 00:35:32] 2025-10-13 04:35:18,382 | INFO     | traces error code: 0
[2025-10-13 00:35:32] 2025-10-13 04:35:18,383 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 00:35:32] 2025-10-13 04:35:32,582 | INFO     | PID=1513 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 00:35:32] 2025-10-13 04:35:32,583 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 00:35:32] 2025-10-13 04:35:32,583 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 00:35:32] 2025-10-13 04:35:32,583 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 00:35:32] 2025-10-13 04:35:32,583 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 00:35:32] 2025-10-13 04:35:32,583 | INFO     | [monitor] control thread has ended
[2025-10-13 00:35:32] 2025-10-13 04:35:32,672 [wrapper] ==== pilot stdout END ====
[2025-10-13 00:35:32] 2025-10-13 04:35:32,676 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 00:35:32] 2025-10-13 04:35:32,679 [wrapper] pilotpid: 1513
[2025-10-13 00:35:32] 2025-10-13 04:35:32,682 [wrapper] Pilot exit status: 0
[2025-10-13 00:35:32] 2025-10-13 04:35:32,698 [wrapper] pandaids: 6840850813
[2025-10-13 00:35:32] 2025-10-13 04:35:32,736 [wrapper] cleanup supervisor_pilot  5827 1514
[2025-10-13 00:35:32] 2025-10-13 04:35:32,740 [wrapper] Test setup, not cleaning
[2025-10-13 00:35:32] 2025-10-13 04:35:32,744 [wrapper] apfmon messages muted
[2025-10-13 00:35:32] 2025-10-13 04:35:32,747 [wrapper] ==== wrapper stdout END ====
[2025-10-13 00:35:32] 2025-10-13 04:35:32,751 [wrapper] ==== wrapper stderr END ====
[2025-10-13 00:35:32]  *** Error codes and diagnostics ***
[2025-10-13 00:35:32]     "exeErrorCode": 0,
[2025-10-13 00:35:32]     "exeErrorDiag": "",
[2025-10-13 00:35:32]     "pilotErrorCode": 0,
[2025-10-13 00:35:32]     "pilotErrorDiag": "",
[2025-10-13 00:35:32]  *** Listing of results directory ***
[2025-10-13 00:35:32] total 407620
[2025-10-13 00:35:32] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-13 00:35:32] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 18:12 queuedata.json
[2025-10-13 00:35:32] -rwx------ 1 boincer umatlas     36292 Oct 12 18:12 runpilot2-wrapper.sh
[2025-10-13 00:35:32] -rw-r--r-- 1 boincer umatlas       100 Oct 12 23:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 00:35:32] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 23:31 run_atlas
[2025-10-13 00:35:32] -rw-r--r-- 1 boincer umatlas       105 Oct 12 23:31 job.xml
[2025-10-13 00:35:32] -rw-r--r-- 2 boincer umatlas 220622902 Oct 12 23:31 EVNT.46676267._004298.pool.root.1
[2025-10-13 00:35:32] drwxrwx--x 2 boincer umatlas      4096 Oct 12 23:31 shared
[2025-10-13 00:35:32] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 23:31 input.tar.gz
[2025-10-13 00:35:32] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 23:31 start_atlas.sh
[2025-10-13 00:35:32] -rw-r--r-- 1 boincer umatlas         0 Oct 12 23:31 boinc_lockfile
[2025-10-13 00:35:32] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 23:31 pandaJob.out
[2025-10-13 00:35:32] -rw------- 1 boincer umatlas    974373 Oct 12 23:31 agis_schedconf.cvmfs.json
[2025-10-13 00:35:32] -rw------- 1 boincer umatlas   1560580 Oct 12 23:31 agis_ddmendpoints.agis.ALL.json
[2025-10-13 00:35:32] drwx------ 5 boincer umatlas      4096 Oct 12 23:31 pilot3
[2025-10-13 00:35:32] -rw-r--r-- 1 boincer umatlas      5954 Oct 13 00:31 init_data.xml
[2025-10-13 00:35:32] -rw-r--r-- 1 boincer umatlas       529 Oct 13 00:34 boinc_task_state.xml
[2025-10-13 00:35:32] -rw------- 1 boincer umatlas 191017192 Oct 13 00:34 HITS.46676269._090761.pool.root.1
[2025-10-13 00:35:32] -rw------- 1 boincer umatlas        95 Oct 13 00:34 pilot_heartbeat.json
[2025-10-13 00:35:32] -rw------- 1 boincer umatlas      1049 Oct 13 00:34 memory_monitor_summary.json
[2025-10-13 00:35:32] -rw------- 1 boincer umatlas    370115 Oct 13 00:34 log.46676269._090761.job.log.tgz.1
[2025-10-13 00:35:32] -rw------- 1 boincer umatlas      7852 Oct 13 00:34 heartbeat.json
[2025-10-13 00:35:32] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 00:35 boinc_mmap_file
[2025-10-13 00:35:32] -rw-r--r-- 1 boincer umatlas        27 Oct 13 00:35 wrapper_checkpoint.txt
[2025-10-13 00:35:32] -rw------- 1 boincer umatlas       744 Oct 13 00:35 pilotlog.txt
[2025-10-13 00:35:32] -rw------- 1 boincer umatlas    559017 Oct 13 00:35 log.46676269._090761.job.log.1
[2025-10-13 00:35:32] -rw------- 1 boincer umatlas       357 Oct 13 00:35 output.list
[2025-10-13 00:35:32] -rw-r--r-- 1 boincer umatlas       620 Oct 13 00:35 runtime_log
[2025-10-13 00:35:32] -rw------- 1 boincer umatlas    952320 Oct 13 00:35 result.tar.gz
[2025-10-13 00:35:32] -rw-r--r-- 1 boincer umatlas      8705 Oct 13 00:35 runtime_log.err
[2025-10-13 00:35:32] -rw------- 1 boincer umatlas       659 Oct 13 00:35 Kj0NDmjTJS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm18UMDmuYNlam.diag
[2025-10-13 00:35:32] -rw-r--r-- 1 boincer umatlas     21649 Oct 13 00:35 stderr.txt
[2025-10-13 00:35:32] HITS file was successfully produced:
[2025-10-13 00:35:32] -rw------- 1 boincer umatlas 191017192 Oct 13 00:34 shared/HITS.pool.root.1
[2025-10-13 00:35:32]  *** Contents of shared directory: ***
[2025-10-13 00:35:32] total 403512
[2025-10-13 00:35:32] -rw-r--r-- 2 boincer umatlas 220622902 Oct 12 23:31 ATLAS.root_0
[2025-10-13 00:35:32] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 23:31 input.tar.gz
[2025-10-13 00:35:32] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 23:31 start_atlas.sh
[2025-10-13 00:35:32] -rw------- 1 boincer umatlas 191017192 Oct 13 00:34 HITS.pool.root.1
[2025-10-13 00:35:32] -rw------- 1 boincer umatlas    952320 Oct 13 00:35 result.tar.gz
00:35:34 (30176): run_atlas exited; CPU time 39973.603535
00:35:34 (30176): called boinc_finish(0)

</stderr_txt>
]]>

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