Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:31:03 (15848): wrapper (7.7.26015): starting
23:31:03 (15848): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 23:31:03] Arguments: --nthreads 8
[2025-10-12 23:31:03] Threads: 8
[2025-10-12 23:31:03] Checking for CVMFS
[2025-10-12 23:31:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 23:31:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 23:31:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 23:31:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 23:31:04] 2.11.2.0 3101 199540 78956 151647 1 56 13097832 20275200 1 130560 1 69434060 99.977 9064671 26100 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 23:31:04] CVMFS is ok
[2025-10-12 23:31:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 23:31:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 23:31:04] Further information can be found at the LHC@home message board.
[2025-10-12 23:31:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 23:31:04] Checking for apptainer binary...
[2025-10-12 23:31:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 23:31:04] Running /usr/bin/apptainer --version
[2025-10-12 23:31:04] apptainer version 1.3.2-1.el7
[2025-10-12 23:31:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 23:31:05] c-204-29.aglt2.org
[2025-10-12 23:31:05] apptainer works
[2025-10-12 23:31:05] Set ATHENA_PROC_NUMBER=8
[2025-10-12 23:31:05] Set ATHENA_CORE_NUMBER=8
[2025-10-12 23:31:05] Starting ATLAS job with PandaID=6840536979
[2025-10-12 23:31:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:38:41]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:38:41] 2025-10-13 05:37:43,399 | INFO     | time since job start (7579s) is within the limit (172800.0s)
[2025-10-13 01:38:41] 2025-10-13 05:37:45,126 | INFO     | monitor loop #560: job 0:6840536979 is in state 'finished'
[2025-10-13 01:38:41] 2025-10-13 05:37:45,127 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:38:41] 2025-10-13 05:37:45,404 | INFO     | time since job start (7581s) is within the limit (172800.0s)
[2025-10-13 01:38:41] 2025-10-13 05:37:45,858 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 01:38:41] 2025-10-13 05:37:45,861 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-10-13 01:38:41] 2025-10-13 05:37:45,863 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840536979/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:38:41] 2025-10-13 05:37:45,864 | INFO     | extracted standard info from prmon json
[2025-10-13 01:38:41] 2025-10-13 05:37:45,864 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 01:38:41] 2025-10-13 05:37:45,864 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 01:38:41] 2025-10-13 05:37:45,865 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 01:38:41] 2025-10-13 05:37:45,865 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 01:38:41] 2025-10-13 05:37:45,867 | INFO     | fitting pss+swap vs Time
[2025-10-13 01:38:41] 2025-10-13 05:37:45,868 | INFO     | sum of square deviations: 591173875.0
[2025-10-13 01:38:41] 2025-10-13 05:37:45,868 | INFO     | sum of deviations: -5229618724.499998
[2025-10-13 01:38:41] 2025-10-13 05:37:45,868 | INFO     | mean x: 1760330067.5
[2025-10-13 01:38:41] 2025-10-13 05:37:45,869 | INFO     | mean y: 2548195.379032258
[2025-10-13 01:38:41] 2025-10-13 05:37:45,869 | INFO     | -- intersect: 15574709739.727293
[2025-10-13 01:38:41] 2025-10-13 05:37:45,869 | INFO     | intersect: 15574709739.727293
[2025-10-13 01:38:41] 2025-10-13 05:37:45,869 | INFO     | chi2: 1.5407620695774777
[2025-10-13 01:38:41] 2025-10-13 05:37:45,869 | INFO     | sum of square deviations: 522502820.0
[2025-10-13 01:38:41] 2025-10-13 05:37:45,870 | INFO     | sum of deviations: -4549844514.999997
[2025-10-13 01:38:41] 2025-10-13 05:37:45,870 | INFO     | mean x: 1760329915.0
[2025-10-13 01:38:41] 2025-10-13 05:37:45,870 | INFO     | mean y: 2549705.8235294116
[2025-10-13 01:38:41] 2025-10-13 05:37:45,870 | INFO     | -- intersect: 15331131871.855019
[2025-10-13 01:38:41] 2025-10-13 05:37:45,870 | INFO     | intersect: 15331131871.855019
[2025-10-13 01:38:41] 2025-10-13 05:37:45,871 | INFO     | chi2: 1.5411118837367668
[2025-10-13 01:38:41] 2025-10-13 05:37:45,871 | INFO     | current chi2=1.5411118837367668 (change=-0.022703970080530315 %)
[2025-10-13 01:38:41] 2025-10-13 05:37:45,871 | INFO     | right removable region: 118
[2025-10-13 01:38:41] 2025-10-13 05:37:45,871 | INFO     | sum of square deviations: 522502820.0
[2025-10-13 01:38:41] 2025-10-13 05:37:45,872 | INFO     | sum of deviations: -23335591846.0
[2025-10-13 01:38:41] 2025-10-13 05:37:45,872 | INFO     | mean x: 1760330220.0
[2025-10-13 01:38:41] 2025-10-13 05:37:45,872 | INFO     | mean y: 2587655.1596638653
[2025-10-13 01:38:41] 2025-10-13 05:37:45,872 | INFO     | -- intersect: 78621010285.10716
[2025-10-13 01:38:41] 2025-10-13 05:37:45,872 | INFO     | intersect: 78621010285.10716
[2025-10-13 01:38:41] 2025-10-13 05:37:45,873 | INFO     | chi2: 0.1150206944037191
[2025-10-13 01:38:41] 2025-10-13 05:37:45,873 | INFO     | current chi2=0.1150206944037191 (change=92.5348178881856 %)
[2025-10-13 01:38:41] 2025-10-13 05:37:45,873 | INFO     | sum of square deviations: 459366752.5
[2025-10-13 01:38:41] 2025-10-13 05:37:45,873 | INFO     | sum of deviations: -20765617499.0
[2025-10-13 01:38:41] 2025-10-13 05:37:45,874 | INFO     | mean x: 1760330372.5
[2025-10-13 01:38:41] 2025-10-13 05:37:45,874 | INFO     | mean y: 2581424.4736842103
[2025-10-13 01:38:41] 2025-10-13 05:37:45,874 | INFO     | -- intersect: 79578099217.75844
[2025-10-13 01:38:41] 2025-10-13 05:37:45,874 | INFO     | intersect: 79578099217.75844
[2025-10-13 01:38:41] 2025-10-13 05:37:45,874 | INFO     | chi2: 0.11456496499214136
[2025-10-13 01:38:41] 2025-10-13 05:37:45,874 | INFO     | current chi2=0.11456496499214136 (change=0.39621514540518227 %)
[2025-10-13 01:38:41] 2025-10-13 05:37:45,874 | INFO     | left removable region: 20
[2025-10-13 01:38:41] 2025-10-13 05:37:45,875 | INFO     | sum of square deviations: 291817564.5
[2025-10-13 01:38:41] 2025-10-13 05:37:45,875 | INFO     | sum of deviations: -13179979457.0
[2025-10-13 01:38:41] 2025-10-13 05:37:45,875 | INFO     | mean x: 1760330494.5
[2025-10-13 01:38:41] 2025-10-13 05:37:45,875 | INFO     | mean y: 2566176.5102040814
[2025-10-13 01:38:41] 2025-10-13 05:37:45,875 | INFO     | -- intersect: 79508129163.41757
[2025-10-13 01:38:41] 2025-10-13 05:37:45,876 | INFO     | intersect: 79508129163.41757
[2025-10-13 01:38:41] 2025-10-13 05:37:45,876 | INFO     | chi2: 0.1039067425280272
[2025-10-13 01:38:41] 2025-10-13 05:37:45,876 | INFO     | -- intersect: 79508129163.41757
[2025-10-13 01:38:41] 2025-10-13 05:37:45,876 | INFO     | current memory leak: -45.17 B/s (using 98 data points, chi2=0.10)
[2025-10-13 01:38:41] 2025-10-13 05:37:45,876 | INFO     | could have reported an average CPU frequency of 1978 MHz (8 samples)
[2025-10-13 01:38:41] 2025-10-13 05:37:45,877 | INFO     | ..............................
[2025-10-13 01:38:41] 2025-10-13 05:37:45,877 | INFO     | . Timing measurements:
[2025-10-13 01:38:41] 2025-10-13 05:37:45,877 | INFO     | . get job = 0 s
[2025-10-13 01:38:41] 2025-10-13 05:37:45,877 | INFO     | . initial setup = 2 s
[2025-10-13 01:38:41] 2025-10-13 05:37:45,877 | INFO     | . payload setup = 8 s
[2025-10-13 01:38:41] 2025-10-13 05:37:45,877 | INFO     | . stage-in = 0 s
[2025-10-13 01:38:41] 2025-10-13 05:37:45,877 | INFO     | . payload execution = 7545 s
[2025-10-13 01:38:41] 2025-10-13 05:37:45,877 | INFO     | . stage-out = 0 s
[2025-10-13 01:38:41] 2025-10-13 05:37:45,878 | INFO     | . log creation = 0 s
[2025-10-13 01:38:41] 2025-10-13 05:37:45,878 | INFO     | ..............................
[2025-10-13 01:38:41] 2025-10-13 05:37:45,971 | INFO     | 
[2025-10-13 01:38:41] 2025-10-13 05:37:45,972 | INFO     | job summary report
[2025-10-13 01:38:41] 2025-10-13 05:37:45,972 | INFO     | --------------------------------------------------
[2025-10-13 01:38:41] 2025-10-13 05:37:45,972 | INFO     | PanDA job id: 6840536979
[2025-10-13 01:38:41] 2025-10-13 05:37:45,972 | INFO     | task id: 46676269
[2025-10-13 01:38:41] 2025-10-13 05:37:45,972 | INFO     | errors: (none)
[2025-10-13 01:38:41] 2025-10-13 05:37:45,972 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 01:38:41] 2025-10-13 05:37:45,973 | INFO     | pilot state: finished 
[2025-10-13 01:38:41] 2025-10-13 05:37:45,973 | INFO     | transexitcode: 0
[2025-10-13 01:38:41] 2025-10-13 05:37:45,973 | INFO     | exeerrorcode: 0
[2025-10-13 01:38:41] 2025-10-13 05:37:45,973 | INFO     | exeerrordiag: 
[2025-10-13 01:38:41] 2025-10-13 05:37:45,973 | INFO     | exitcode: 0
[2025-10-13 01:38:41] 2025-10-13 05:37:45,974 | INFO     | exitmsg: OK
[2025-10-13 01:38:41] 2025-10-13 05:37:45,974 | INFO     | cpuconsumptiontime: 56426 s
[2025-10-13 01:38:41] 2025-10-13 05:37:45,974 | INFO     | nevents: 400
[2025-10-13 01:38:41] 2025-10-13 05:37:45,974 | INFO     | neventsw: 0
[2025-10-13 01:38:41] 2025-10-13 05:37:45,974 | INFO     | pid: 26962
[2025-10-13 01:38:41] 2025-10-13 05:37:45,974 | INFO     | pgrp: 26962
[2025-10-13 01:38:41] 2025-10-13 05:37:45,975 | INFO     | corecount: 8
[2025-10-13 01:38:41] 2025-10-13 05:37:45,975 | INFO     | event service: False
[2025-10-13 01:38:41] 2025-10-13 05:37:45,975 | INFO     | sizes: {0: 2348686, 1: 2348885, 7: 2349147, 12: 2349175, 7558: 2376721, 7559: 2385903, 7565: 2386041}
[2025-10-13 01:38:41] 2025-10-13 05:37:45,975 | INFO     | --------------------------------------------------
[2025-10-13 01:38:41] 2025-10-13 05:37:45,975 | INFO     | 
[2025-10-13 01:38:41] 2025-10-13 05:37:45,975 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 01:38:41] 2025-10-13 05:37:46,004 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:38:41] 2025-10-13 05:37:46,005 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:38:41] 2025-10-13 05:37:46,005 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:38:41] 2025-10-13 05:37:46,005 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:38:41] 2025-10-13 05:37:46,005 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:38:41] 2025-10-13 05:37:46,006 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:38:41] 2025-10-13 05:37:46,006 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:38:41] 2025-10-13 05:37:46,006 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:38:41] 2025-10-13 05:37:46,006 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:38:41] 2025-10-13 05:37:46,006 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:38:41] 2025-10-13 05:37:46,006 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:38:41] 2025-10-13 05:37:46,007 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:38:41] 2025-10-13 05:37:46,007 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:38:41] 2025-10-13 05:37:46,007 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:38:41] 2025-10-13 05:37:46,007 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:38:41] 2025-10-13 05:37:46,007 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:38:41] 2025-10-13 05:37:46,008 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:38:41] 2025-10-13 05:37:46,008 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:38:41] 2025-10-13 05:37:46,008 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:38:41] 2025-10-13 05:37:46,008 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:38:41] 2025-10-13 05:37:46,008 | INFO     | job 6840536979 has completed (purged errors)
[2025-10-13 01:38:41] 2025-10-13 05:37:46,009 | INFO     | overall cleanup function is called
[2025-10-13 01:38:41] 2025-10-13 05:37:47,012 | INFO     | --- collectZombieJob: --- 10, [26962]
[2025-10-13 01:38:41] 2025-10-13 05:37:47,012 | INFO     | zombie collector waiting for pid 26962
[2025-10-13 01:38:41] 2025-10-13 05:37:47,013 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:38:41] 2025-10-13 05:37:47,013 | INFO     | collected zombie processes
[2025-10-13 01:38:41] 2025-10-13 05:37:47,013 | INFO     | will attempt to kill all subprocesses of pid=26962
[2025-10-13 01:38:41] 2025-10-13 05:37:47,103 | INFO     | process IDs to be killed: [26962] (in reverse order)
[2025-10-13 01:38:41] 2025-10-13 05:37:47,163 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:38:41] 2025-10-13 05:37:47,164 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:38:41] 2025-10-13 05:37:47,168 | INFO     | did not find any defunct processes belonging to 26962
[2025-10-13 01:38:41] 2025-10-13 05:37:47,171 | INFO     | did not find any defunct processes belonging to 26962
[2025-10-13 01:38:41] 2025-10-13 05:37:47,172 | INFO     | ready for new job
[2025-10-13 01:38:41] 2025-10-13 05:37:47,172 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:38:41] 2025-10-13 05:37:47,174 | INFO     | ***************************************
[2025-10-13 01:38:41] 2025-10-13 05:37:47,174 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:38:41] 2025-10-13 05:37:47,174 | INFO     | ***************************************
[2025-10-13 01:38:41] 2025-10-13 05:37:47,174 | INFO     | 
[2025-10-13 01:38:41] 2025-10-13 05:37:47,175 | INFO     | architecture information:
[2025-10-13 01:38:41] 2025-10-13 05:37:47,176 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:38:41] 2025-10-13 05:37:47,195 | INFO     | cat /etc/os-release:
[2025-10-13 01:38:41] NAME="CentOS Linux"
[2025-10-13 01:38:41] VERSION="7 (Core)"
[2025-10-13 01:38:41] ID="centos"
[2025-10-13 01:38:41] ID_LIKE="rhel fedora"
[2025-10-13 01:38:41] VERSION_ID="7"
[2025-10-13 01:38:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:38:41] ANSI_COLOR="0;31"
[2025-10-13 01:38:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:38:41] HOME_URL="https://www.centos.org/"
[2025-10-13 01:38:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:38:41] 
[2025-10-13 01:38:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:38:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:38:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:38:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:38:41] 
[2025-10-13 01:38:41] 2025-10-13 05:37:47,195 | INFO     | ***************************************
[2025-10-13 01:38:41] 2025-10-13 05:37:47,698 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 01:38:41] 2025-10-13 05:37:47,718 | INFO     | sufficient remaining disk space (18588106752 B)
[2025-10-13 01:38:41] 2025-10-13 05:37:47,719 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:38:41] 2025-10-13 05:37:47,719 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:38:41] 2025-10-13 05:37:47,719 | INFO     | update_server=False
[2025-10-13 01:38:41] 2025-10-13 05:37:47,720 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:38:41] 2025-10-13 05:37:47,720 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:38:41] 2025-10-13 05:37:48,055 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:38:41] 2025-10-13 05:37:48,061 | INFO     | all payload control threads have been joined
[2025-10-13 01:38:41] 2025-10-13 05:37:48,141 | INFO     | all job control threads have been joined
[2025-10-13 01:38:41] 2025-10-13 05:37:48,248 | INFO     | all data control threads have been joined
[2025-10-13 01:38:41] 2025-10-13 05:37:48,635 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:38:41] 2025-10-13 05:37:48,636 | INFO     | aborting loop
[2025-10-13 01:38:41] 2025-10-13 05:37:48,723 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:38:41] 2025-10-13 05:37:48,723 | INFO     | [job] validate thread has finished
[2025-10-13 01:38:41] 2025-10-13 05:37:48,724 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:38:41] 2025-10-13 05:37:49,016 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:38:41] 2025-10-13 05:37:49,065 | INFO     | [payload] control thread has finished
[2025-10-13 01:38:41] 2025-10-13 05:37:49,144 | INFO     | [job] control thread has finished
[2025-10-13 01:38:41] 2025-10-13 05:37:49,252 | INFO     | [data] control thread has finished
[2025-10-13 01:38:41] 2025-10-13 05:37:49,527 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:38:41] 2025-10-13 05:37:49,631 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:38:41] 2025-10-13 05:37:49,637 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:38:41] 2025-10-13 05:37:49,651 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:38:41] 2025-10-13 05:37:49,674 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:38:41] 2025-10-13 05:37:50,061 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:38:41] 2025-10-13 05:37:50,063 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:38:41] 2025-10-13 05:37:50,156 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:38:41] 2025-10-13 05:37:50,642 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:38:41] 2025-10-13 05:37:54,646 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:38:41] 2025-10-13 05:38:18,599 | INFO     | PID=20021 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 01:38:41] 2025-10-13 05:38:18,600 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:38:41] 2025-10-13 05:38:18,600 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:38:41] 2025-10-13 05:38:18,601 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:38:41] 2025-10-13 05:38:35,694 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:38:41] 2025-10-13 05:38:36,253 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139849241188160)>', '<ExcThread(monitor, started 139848807597824)>']
[2025-10-13 01:38:41] 2025-10-13 05:38:36,670 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:38:41] 2025-10-13 05:38:36,670 | INFO     | [monitor] control thread has ended
[2025-10-13 01:38:41] 2025-10-13 05:38:41,265 | INFO     | all workflow threads have been joined
[2025-10-13 01:38:41] 2025-10-13 05:38:41,272 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:38:41] 2025-10-13 05:38:41,273 | INFO     | traces error code: 0
[2025-10-13 01:38:41] 2025-10-13 05:38:41,273 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:38:41] 2025-10-13 05:38:41,396 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:38:41] 2025-10-13 05:38:41,401 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:38:41] 2025-10-13 05:38:41,406 [wrapper] pilotpid: 20021
[2025-10-13 01:38:41] 2025-10-13 05:38:41,411 [wrapper] Pilot exit status: 0
[2025-10-13 01:38:41] 2025-10-13 05:38:41,431 [wrapper] pandaids: 6840536979
[2025-10-13 01:38:41] 2025-10-13 05:38:41,484 [wrapper] cleanup supervisor_pilot 18501 20022
[2025-10-13 01:38:41] 2025-10-13 05:38:41,489 [wrapper] Test setup, not cleaning
[2025-10-13 01:38:41] 2025-10-13 05:38:41,495 [wrapper] apfmon messages muted
[2025-10-13 01:38:41] 2025-10-13 05:38:41,500 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:38:41] 2025-10-13 05:38:41,505 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:38:41]  *** Error codes and diagnostics ***
[2025-10-13 01:38:41]     "exeErrorCode": 0,
[2025-10-13 01:38:41]     "exeErrorDiag": "",
[2025-10-13 01:38:41]     "pilotErrorCode": 0,
[2025-10-13 01:38:41]     "pilotErrorDiag": "",
[2025-10-13 01:38:41]  *** Listing of results directory ***
[2025-10-13 01:38:41] total 407172
[2025-10-13 01:38:41] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 14:20 pilot3.tar.gz
[2025-10-13 01:38:41] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 14:42 queuedata.json
[2025-10-13 01:38:41] -rwx------ 1 boincer umatlas     36292 Oct 12 14:42 runpilot2-wrapper.sh
[2025-10-13 01:38:41] -rw-r--r-- 1 boincer umatlas       100 Oct 12 23:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:38:41] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 23:31 run_atlas
[2025-10-13 01:38:41] -rw-r--r-- 1 boincer umatlas       105 Oct 12 23:31 job.xml
[2025-10-13 01:38:41] -rw-r--r-- 2 boincer umatlas 219205596 Oct 12 23:31 EVNT.46676267._004415.pool.root.1
[2025-10-13 01:38:41] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 23:31 start_atlas.sh
[2025-10-13 01:38:41] drwxrwx--x 2 boincer umatlas      4096 Oct 12 23:31 shared
[2025-10-13 01:38:41] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 23:31 input.tar.gz
[2025-10-13 01:38:41] -rw-r--r-- 1 boincer umatlas         0 Oct 12 23:31 boinc_lockfile
[2025-10-13 01:38:41] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 23:31 pandaJob.out
[2025-10-13 01:38:41] -rw------- 1 boincer umatlas    974373 Oct 12 23:31 agis_schedconf.cvmfs.json
[2025-10-13 01:38:41] -rw------- 1 boincer umatlas   1560580 Oct 12 23:31 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:38:41] drwx------ 5 boincer umatlas      4096 Oct 12 23:31 pilot3
[2025-10-13 01:38:41] -rw------- 1 boincer umatlas 190949508 Oct 13 01:37 HITS.46676269._086398.pool.root.1
[2025-10-13 01:38:41] -rw-r--r-- 1 boincer umatlas      5910 Oct 13 01:37 init_data.xml
[2025-10-13 01:38:41] -rw-r--r-- 1 boincer umatlas       529 Oct 13 01:37 boinc_task_state.xml
[2025-10-13 01:38:41] -rw------- 1 boincer umatlas      1050 Oct 13 01:37 memory_monitor_summary.json
[2025-10-13 01:38:41] -rw------- 1 boincer umatlas    378922 Oct 13 01:37 log.46676269._086398.job.log.tgz.1
[2025-10-13 01:38:41] -rw------- 1 boincer umatlas      7853 Oct 13 01:37 heartbeat.json
[2025-10-13 01:38:41] -rw------- 1 boincer umatlas        95 Oct 13 01:38 pilot_heartbeat.json
[2025-10-13 01:38:41] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 01:38 boinc_mmap_file
[2025-10-13 01:38:41] -rw-r--r-- 1 boincer umatlas        27 Oct 13 01:38 wrapper_checkpoint.txt
[2025-10-13 01:38:41] -rw------- 1 boincer umatlas      4746 Oct 13 01:38 pilotlog.txt
[2025-10-13 01:38:41] -rw------- 1 boincer umatlas   1067421 Oct 13 01:38 log.46676269._086398.job.log.1
[2025-10-13 01:38:41] -rw------- 1 boincer umatlas       357 Oct 13 01:38 output.list
[2025-10-13 01:38:41] -rw-r--r-- 1 boincer umatlas       620 Oct 13 01:38 runtime_log
[2025-10-13 01:38:41] -rw------- 1 boincer umatlas   1464320 Oct 13 01:38 result.tar.gz
[2025-10-13 01:38:41] -rw------- 1 boincer umatlas       659 Oct 13 01:38 NdKODmYCGS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmP7kNDmXddMCn.diag
[2025-10-13 01:38:41] -rw-r--r-- 1 boincer umatlas      8703 Oct 13 01:38 runtime_log.err
[2025-10-13 01:38:41] -rw-r--r-- 1 boincer umatlas     21089 Oct 13 01:38 stderr.txt
[2025-10-13 01:38:41] HITS file was successfully produced:
[2025-10-13 01:38:41] -rw------- 1 boincer umatlas 190949508 Oct 13 01:37 shared/HITS.pool.root.1
[2025-10-13 01:38:41]  *** Contents of shared directory: ***
[2025-10-13 01:38:41] total 402556
[2025-10-13 01:38:41] -rw-r--r-- 2 boincer umatlas 219205596 Oct 12 23:31 ATLAS.root_0
[2025-10-13 01:38:41] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 23:31 start_atlas.sh
[2025-10-13 01:38:41] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 23:31 input.tar.gz
[2025-10-13 01:38:41] -rw------- 1 boincer umatlas 190949508 Oct 13 01:37 HITS.pool.root.1
[2025-10-13 01:38:41] -rw------- 1 boincer umatlas   1464320 Oct 13 01:38 result.tar.gz
01:38:43 (15848): run_atlas exited; CPU time 56351.506728
01:38:43 (15848): called boinc_finish(0)

</stderr_txt>
]]>

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