Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 02:43:08 (36296): vboxwrapper version 26210
2025-10-13 02:43:08 (36296): BOINC client version: 7.16.11
2025-10-13 02:43:09 (36296): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2025-10-13 02:43:09 (36296): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 02:43:09 (36296): Create VM. (boinc_8dec0d69ad1b9ce7, slot#2)
2025-10-13 02:43:10 (36296): Setting Memory Size for VM. (4400MB)
2025-10-13 02:43:10 (36296): Setting CPU Count for VM. (4)
2025-10-13 02:43:11 (36296): Setting Chipset Options for VM.
2025-10-13 02:43:12 (36296): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 02:43:12 (36296): Setting Boot Options for VM.
2025-10-13 02:43:13 (36296): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 02:43:14 (36296): Enabling VM Network Access.
2025-10-13 02:43:14 (36296): Disabling USB Support for VM.
2025-10-13 02:43:15 (36296): Disabling COM Port Support for VM.
2025-10-13 02:43:15 (36296): Disabling LPT Port Support for VM.
2025-10-13 02:43:15 (36296): Disabling Audio Support for VM.
2025-10-13 02:43:16 (36296): Disabling Clipboard Support for VM.
2025-10-13 02:43:16 (36296): Disabling Drag and Drop Support for VM.
2025-10-13 02:43:16 (36296): Adding storage controller(s) to VM.
2025-10-13 02:43:17 (36296): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 02:43:18 (36296): Adding VirtualBox Guest Additions to VM.
2025-10-13 02:43:18 (36296): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 02:43:19 (36296): forwarding host port 63407 to guest port 80
2025-10-13 02:43:20 (36296): Enabling remote desktop for VM.
2025-10-13 02:43:20 (36296): Required extension pack not installed, remote desktop not enabled.
2025-10-13 02:43:20 (36296): Enabling shared directory for VM.
2025-10-13 02:43:21 (36296): Starting VM using VBoxManage interface. (boinc_8dec0d69ad1b9ce7, slot#2)
2025-10-13 02:43:26 (36296): Successfully started VM. (PID = '33864')
2025-10-13 02:43:26 (36296): Reporting VM Process ID to BOINC.
2025-10-13 02:43:26 (36296): Guest Log: BIOS: VirtualBox 6.1.12
2025-10-13 02:43:26 (36296): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 02:43:26 (36296): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 02:43:26 (36296): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 02:43:26 (36296): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 02:43:26 (36296): Detected: Web Application Enabled (http://localhost:63407)
2025-10-13 02:43:26 (36296): Preference change detected
2025-10-13 02:43:26 (36296): Setting CPU throttle for VM. (100%)
2025-10-13 02:43:26 (36296): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 02:43:28 (36296): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 02:43:28 (36296): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 02:43:31 (36296): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 02:43:31 (36296): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 02:43:31 (36296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 02:43:45 (36296): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 02:43:45 (36296): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-13 02:44:37 (36296): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 02:44:37 (36296): Guest Log: 00:00:00.000145 main     Log opened 2025-10-13T02:44:36.154986000Z
2025-10-13 02:44:37 (36296): Guest Log: 00:00:00.000317 main     OS Product: Linux
2025-10-13 02:44:37 (36296): Guest Log: 00:00:00.000353 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 02:44:37 (36296): Guest Log: 00:00:00.000383 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 02:44:37 (36296): Guest Log: 00:00:00.000413 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 02:44:37 (36296): Guest Log: 00:00:00.000414 main     Process ID: 1332
2025-10-13 02:44:37 (36296): Guest Log: 00:00:00.000414 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 02:44:37 (36296): Guest Log: 00:00:00.003304 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 02:44:38 (36296): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 02:44:38 (36296): Guest Log: [INFO] Mounting shared directory
2025-10-13 02:44:38 (36296): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 02:44:47 (36296): Guest Log: 00:00:10.012599 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 530 288 000ns (GuestNow=1 760 341 487 690 348 000 ns GuestLast=1 760 323 476 160 060 000 ns fSetTimeLastLoop=true )
2025-10-13 02:45:37 (36296): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 02:45:37 (36296): Guest Log: [INFO] Detected branch: prod
2025-10-13 02:45:37 (36296): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 02:45:37 (36296): Guest Log: Copying input files
2025-10-13 02:45:56 (36296): Guest Log: Copied input files into RunAtlas.
2025-10-13 02:45:56 (36296): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-13 02:45:56 (36296): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-13 02:45:56 (36296): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-13 02:45:56 (36296): Guest Log: Further information can be found at the LHC@home message board.
2025-10-13 02:47:01 (36296): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 02:47:01 (36296): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 02:47:01 (36296): Guest Log: 2.6.3.0 1631 1 30140 151653 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-13 02:47:10 (36296): Guest Log: copied the webapp to /var/www
2025-10-13 02:47:11 (36296): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-13 02:47:11 (36296): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-13 02:47:11 (36296): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 02:47:11 (36296): Guest Log:  *** Starting ATLAS job. (PandaID=6840852532 taskID=46676269) ***
2025-10-13 04:28:39 (36296): Status Report: Elapsed Time: '6001.423752'
2025-10-13 04:28:40 (36296): Status Report: CPU Time: '18698.312500'
2025-10-13 06:19:43 (36296): Status Report: Elapsed Time: '12001.484327'
2025-10-13 06:19:43 (36296): Status Report: CPU Time: '44673.734375'
2025-10-13 06:21:57 (36296): Guest Log:  *** Job finished ***
2025-10-13 06:21:57 (36296): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:35,132 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:35,132 | INFO     | traces error code: 0
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:35,132 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:47,703 | INFO     | PID=6072 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:47,704 | INFO     | found 0 job(s) in 20 queues
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:47,704 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:47,704 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:47,704 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:47,704 | CRITICAL | thread 'MainThread' is not alive
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:47,704 | INFO     | [monitor] control thread has ended
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:47,895 [wrapper] ==== pilot stdout END ====
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:47,901 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:47,907 [wrapper] pilotpid: 6072
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:47,913 [wrapper] Pilot exit status: 0
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:49,316 [wrapper] pandaids: 6840852532
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:49,351 [wrapper] cleanup supervisor_pilot 13965 6073
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:49,358 [wrapper] Test setup, not cleaning
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:49,364 [wrapper] apfmon messages muted
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:49,370 [wrapper] ==== wrapper stdout END ====
2025-10-13 06:21:57 (36296): Guest Log: 2025-10-13 11:21:49,375 [wrapper] ==== wrapper stderr END ====
2025-10-13 06:21:57 (36296): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 06:21:57 (36296): Guest Log:     "exeErrorCode": 0,
2025-10-13 06:21:57 (36296): Guest Log:     "exeErrorDiag": "",
2025-10-13 06:21:57 (36296): Guest Log:     "pilotErrorCode": 0,
2025-10-13 06:21:57 (36296): Guest Log:     "pilotErrorDiag": "",
2025-10-13 06:21:57 (36296): Guest Log:  *** Listing of results directory ***
2025-10-13 06:21:57 (36296): Guest Log: total 195360
2025-10-13 06:21:57 (36296): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 12 21:57 pilot3.tar.gz
2025-10-13 06:21:57 (36296): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 12 22:41 runpilot2-wrapper.sh
2025-10-13 06:21:57 (36296): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 12 22:41 queuedata.json
2025-10-13 06:21:57 (36296): Guest Log: -rwxr-xr-x. 1 atlas atlas      9018 Oct 13 07:45 init_data.xml
2025-10-13 06:21:57 (36296): Guest Log: -rwxr-xr-x. 1 atlas atlas    569682 Oct 13 07:45 input.tar.gz
2025-10-13 06:21:57 (36296): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 13 07:45 start_atlas.sh
2025-10-13 06:21:57 (36296): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 13 07:45 EVNT.46676267._004626.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 06:21:57 (36296): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 13 07:47 pandaJob.out
2025-10-13 06:21:57 (36296): Guest Log: -rw-------. 1 atlas atlas    972849 Oct 13 07:49 agis_schedconf.cvmfs.json
2025-10-13 06:21:57 (36296): Guest Log: drwx------. 5 atlas atlas      4096 Oct 13 07:50 pilot3
2025-10-13 06:21:57 (36296): Guest Log: -rw-------. 1 atlas atlas 192125751 Oct 13 11:19 HITS.46676269._091361.pool.root.1
2025-10-13 06:21:57 (36296): Guest Log: -rw-------. 1 atlas atlas      1033 Oct 13 11:20 memory_monitor_summary.json
2025-10-13 06:21:57 (36296): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 13 11:20 agis_ddmendpoints.agis.ALL.json
2025-10-13 06:21:57 (36296): Guest Log: -rw-------. 1 atlas atlas    366696 Oct 13 11:20 log.46676269._091361.job.log.tgz.1
2025-10-13 06:21:57 (36296): Guest Log: -rw-------. 1 atlas atlas        95 Oct 13 11:20 pilot_heartbeat.json
2025-10-13 06:21:57 (36296): Guest Log: -rw-------. 1 atlas atlas      7827 Oct 13 11:21 heartbeat.json
2025-10-13 06:21:57 (36296): Guest Log: -rw-------. 1 atlas atlas       814 Oct 13 11:21 pilotlog.txt
2025-10-13 06:21:57 (36296): Guest Log: -rw-------. 1 atlas atlas   1681138 Oct 13 11:21 log.46676269._091361.job.log.1
2025-10-13 06:21:57 (36296): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 11:21 output.list
2025-10-13 06:21:57 (36296): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 11:21 runtime_log
2025-10-13 06:21:57 (36296): Guest Log: -rw-------. 1 atlas atlas   2068480 Oct 13 11:21 result.tar.gz
2025-10-13 06:21:57 (36296): Guest Log: -rw-r--r--. 1 atlas atlas      8649 Oct 13 11:21 runtime_log.err
2025-10-13 06:21:57 (36296): Guest Log: -rw-------. 1 atlas atlas       661 Oct 13 11:21 3EMODmLwJS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDulNDmlcb8Fn.diag
2025-10-13 06:21:57 (36296): Guest Log: Looking for outputfile HITS.46676269._091361.pool.root.1
2025-10-13 06:21:57 (36296): Guest Log: HITS file was successfully produced
2025-10-13 06:21:57 (36296): Guest Log: -rw-------. 1 atlas atlas 192125751 Oct 13 11:19 /home/atlas/RunAtlas/HITS.46676269._091361.pool.root.1
2025-10-13 06:21:59 (36296): Guest Log: Successfully finished the ATLAS job!
2025-10-13 06:21:59 (36296): Guest Log: Copying the results back to the shared directory!
2025-10-13 06:21:59 (36296): Guest Log:  *** Contents of shared directory: ***
2025-10-13 06:21:59 (36296): Guest Log: total 409444
2025-10-13 06:21:59 (36296): Guest Log: -rwxrwxrwx. 1 root root 224471460 Oct 13 07:43 ATLAS.root_0
2025-10-13 06:21:59 (36296): Guest Log: -rwxrwxrwx. 1 root root 192125751 Oct 13 11:21 HITS.pool.root.1
2025-10-13 06:21:59 (36296): Guest Log: -rwxrwxrwx. 1 root root      9018 Oct 13 07:43 init_data.xml
2025-10-13 06:21:59 (36296): Guest Log: -rwxrwxrwx. 1 root root    569682 Oct 13 03:32 input.tar.gz
2025-10-13 06:21:59 (36296): Guest Log: -rwxrwxrwx. 1 root root   2068480 Oct 13 11:21 result.tar.gz
2025-10-13 06:21:59 (36296): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 13 03:32 start_atlas.sh
2025-10-13 06:21:59 (36296): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 06:21:59 (36296): VM Completion File Detected.
2025-10-13 06:21:59 (36296): Powering off VM.
2025-10-13 06:22:02 (36296): Successfully stopped VM.
2025-10-13 06:22:02 (36296): Deregistering VM. (boinc_8dec0d69ad1b9ce7, slot#2)
2025-10-13 06:22:02 (36296): Removing network bandwidth throttle group from VM.
2025-10-13 06:22:03 (36296): Removing VM from VirtualBox.
2025-10-13 06:22:09 (36296): called boinc_finish(0)

</stderr_txt>
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