Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 05:30:09 (9168): vboxwrapper version 26210
2025-10-13 05:30:09 (9168): BOINC client version: 8.2.4
2025-10-13 05:30:09 (9168): Detected: VirtualBox VboxManage Interface (Version: 7.1.10)
2025-10-13 05:30:10 (9168): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 05:30:10 (9168): Create VM. (boinc_225a1daf860ffee8, slot#1)
2025-10-13 05:30:10 (9168): Setting Memory Size for VM. (4000MB)
2025-10-13 05:30:11 (9168): Setting CPU Count for VM. (4)
2025-10-13 05:30:11 (9168): Setting Chipset Options for VM.
2025-10-13 05:30:11 (9168): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 05:30:11 (9168): Setting Boot Options for VM.
2025-10-13 05:30:12 (9168): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 05:30:12 (9168): Enabling VM Network Access.
2025-10-13 05:30:13 (9168): Disabling USB Support for VM.
2025-10-13 05:30:13 (9168): Disabling COM Port Support for VM.
2025-10-13 05:30:13 (9168): Disabling LPT Port Support for VM.
2025-10-13 05:30:13 (9168): Disabling Audio Support for VM.
2025-10-13 05:30:14 (9168): Disabling Clipboard Support for VM.
2025-10-13 05:30:14 (9168): Disabling Drag and Drop Support for VM.
2025-10-13 05:30:14 (9168): Adding storage controller(s) to VM.
2025-10-13 05:30:14 (9168): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 05:30:15 (9168): Adding VirtualBox Guest Additions to VM.
2025-10-13 05:30:15 (9168): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 05:30:15 (9168): forwarding host port 53496 to guest port 80
2025-10-13 05:30:16 (9168): Enabling remote desktop for VM.
2025-10-13 05:30:16 (9168): Enabling shared directory for VM.
2025-10-13 05:30:17 (9168): Starting VM using VBoxManage interface. (boinc_225a1daf860ffee8, slot#1)
2025-10-13 05:30:21 (9168): Successfully started VM. (PID = '27980')
2025-10-13 05:30:21 (9168): Reporting VM Process ID to BOINC.
2025-10-13 05:30:21 (9168): Guest Log: BIOS: VirtualBox 7.1.10
2025-10-13 05:30:21 (9168): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 05:30:21 (9168): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 05:30:21 (9168): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 05:30:21 (9168): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 05:30:21 (9168): Detected: Web Application Enabled (http://localhost:53496)
2025-10-13 05:30:21 (9168): Detected: Remote Desktop Enabled (localhost:53498)
2025-10-13 05:30:21 (9168): Preference change detected
2025-10-13 05:30:21 (9168): Setting CPU throttle for VM. (100%)
2025-10-13 05:30:21 (9168): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 480 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 05:30:23 (9168): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 05:30:23 (9168): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 05:30:26 (9168): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 05:30:26 (9168): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 05:30:26 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 05:30:32 (9168): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 05:30:32 (9168): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-13 05:30:35 (9168): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 05:30:35 (9168): Guest Log: 00:00:00.000097 main     Log opened 2025-10-13T05:30:33.385414000Z
2025-10-13 05:30:35 (9168): Guest Log: 00:00:00.000158 main     OS Product: Linux
2025-10-13 05:30:35 (9168): Guest Log: 00:00:00.000174 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 05:30:35 (9168): Guest Log: 00:00:00.000186 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 05:30:35 (9168): Guest Log: 00:00:00.000199 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 05:30:35 (9168): Guest Log: 00:00:00.000200 main     Process ID: 1302
2025-10-13 05:30:35 (9168): Guest Log: 00:00:00.000200 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 05:30:35 (9168): Guest Log: 00:00:00.000676 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 05:30:35 (9168): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 05:30:35 (9168): Guest Log: [INFO] Mounting shared directory
2025-10-13 05:30:35 (9168): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 05:30:38 (9168): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 05:30:38 (9168): Guest Log: [INFO] Detected branch: prod
2025-10-13 05:30:39 (9168): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 05:30:39 (9168): Guest Log: Copying input files
2025-10-13 05:30:39 (9168): Guest Log: Copied input files into RunAtlas.
2025-10-13 05:30:39 (9168): Guest Log: Detected user-configured HTTP proxy at http://treacle:3128 - will set in /etc/cvmfs/default.local
2025-10-13 05:30:45 (9168): Guest Log: 00:00:10.001722 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 156 461 000ns (GuestNow=1 760 329 845 230 272 000 ns GuestLast=1 760 333 433 386 733 000 ns fSetTimeLastLoop=true )
2025-10-13 05:30:59 (9168): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 05:30:59 (9168): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 05:30:59 (9168): Guest Log: 2.6.3.0 1577 0 31616 151649 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.15:3128 1
2025-10-13 05:30:59 (9168): Guest Log: copied the webapp to /var/www
2025-10-13 05:30:59 (9168): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-13 05:30:59 (9168): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-13 05:31:00 (9168): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 05:31:00 (9168): Guest Log:  *** Starting ATLAS job. (PandaID=6840852494 taskID=46676269) ***
2025-10-13 06:30:03 (9168): VM state change detected. (old = 'running', new = 'paused')
2025-10-13 07:00:14 (9168): VM state change detected. (old = 'paused', new = 'running')
2025-10-13 07:00:17 (9168): Guest Log: 00:59:30.788397 timesync vgsvcTimeSyncWorker: Radical host time change: 1 820 879 000 000ns (HostNow=1 760 335 216 895 000 000 ns HostLast=1 760 333 396 016 000 000 ns)
2025-10-13 07:00:27 (9168): Guest Log: 00:59:40.797324 timesync vgsvcTimeSyncWorker: Radical guest time change: 1 820 887 038 000ns (GuestNow=1 760 335 226 903 970 000 ns GuestLast=1 760 333 406 016 932 000 ns fSetTimeLastLoop=true )
2025-10-13 07:12:28 (9168): Guest Log:  *** Job finished ***
2025-10-13 07:12:28 (9168): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:11,763 | INFO     | all workflow threads have been joined
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:11,763 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:11,763 | INFO     | traces error code: 0
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:11,763 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:27,223 | INFO     | PID=5999 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:27,223 | INFO     | found 0 job(s) in 20 queues
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:27,223 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:27,223 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:27,223 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:27,223 | INFO     | [monitor] control thread has ended
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:27,262 [wrapper] ==== pilot stdout END ====
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:27,265 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:27,267 [wrapper] pilotpid: 5999
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:27,269 [wrapper] Pilot exit status: 0
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:27,383 [wrapper] pandaids: 6840852494
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:27,399 [wrapper] cleanup supervisor_pilot   463 6000
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:27,401 [wrapper] Test setup, not cleaning
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:27,404 [wrapper] apfmon messages muted
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:27,406 [wrapper] ==== wrapper stdout END ====
2025-10-13 07:12:28 (9168): Guest Log: 2025-10-13 06:12:27,408 [wrapper] ==== wrapper stderr END ====
2025-10-13 07:12:28 (9168): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 07:12:28 (9168): Guest Log:     "exeErrorCode": 0,
2025-10-13 07:12:28 (9168): Guest Log:     "exeErrorDiag": "",
2025-10-13 07:12:28 (9168): Guest Log:     "pilotErrorCode": 0,
2025-10-13 07:12:28 (9168): Guest Log:     "pilotErrorDiag": "",
2025-10-13 07:12:28 (9168): Guest Log:  *** Listing of results directory ***
2025-10-13 07:12:28 (9168): Guest Log: total 194364
2025-10-13 07:12:28 (9168): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 12 21:57 pilot3.tar.gz
2025-10-13 07:12:28 (9168): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 12 22:39 runpilot2-wrapper.sh
2025-10-13 07:12:28 (9168): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 12 22:39 queuedata.json
2025-10-13 07:12:28 (9168): Guest Log: -rwxr-xr-x. 1 atlas atlas      9083 Oct 13 04:30 init_data.xml
2025-10-13 07:12:28 (9168): Guest Log: -rwxr-xr-x. 1 atlas atlas    569674 Oct 13 04:30 input.tar.gz
2025-10-13 07:12:28 (9168): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 13 04:30 start_atlas.sh
2025-10-13 07:12:28 (9168): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 13 04:30 EVNT.46676267._004624.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 07:12:28 (9168): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 13 04:30 pandaJob.out
2025-10-13 07:12:28 (9168): Guest Log: -rw-------. 1 atlas atlas    974365 Oct 13 04:33 agis_schedconf.cvmfs.json
2025-10-13 07:12:28 (9168): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 13 04:33 agis_ddmendpoints.agis.ALL.json
2025-10-13 07:12:28 (9168): Guest Log: drwx------. 5 atlas atlas      4096 Oct 13 04:33 pilot3
2025-10-13 07:12:28 (9168): Guest Log: -rw-------. 1 atlas atlas 193522421 Oct 13 06:11 HITS.46676269._091323.pool.root.1
2025-10-13 07:12:28 (9168): Guest Log: -rw-------. 1 atlas atlas      1028 Oct 13 06:11 memory_monitor_summary.json
2025-10-13 07:12:28 (9168): Guest Log: -rw-------. 1 atlas atlas    262721 Oct 13 06:11 log.46676269._091323.job.log.tgz.1
2025-10-13 07:12:28 (9168): Guest Log: -rw-------. 1 atlas atlas      7775 Oct 13 06:11 heartbeat.json
2025-10-13 07:12:28 (9168): Guest Log: -rw-------. 1 atlas atlas       744 Oct 13 06:12 pilotlog.txt
2025-10-13 07:12:28 (9168): Guest Log: -rw-------. 1 atlas atlas        97 Oct 13 06:12 pilot_heartbeat.json
2025-10-13 07:12:28 (9168): Guest Log: -rw-------. 1 atlas atlas    574783 Oct 13 06:12 log.46676269._091323.job.log.1
2025-10-13 07:12:28 (9168): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 06:12 output.list
2025-10-13 07:12:28 (9168): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 06:12 runtime_log
2025-10-13 07:12:28 (9168): Guest Log: -rw-------. 1 atlas atlas    860160 Oct 13 06:12 result.tar.gz
2025-10-13 07:12:28 (9168): Guest Log: -rw-r--r--. 1 atlas atlas      8662 Oct 13 06:12 runtime_log.err
2025-10-13 07:12:28 (9168): Guest Log: -rw-------. 1 atlas atlas       663 Oct 13 06:12 78FODmmtJS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmetlNDmFFQu4m.diag
2025-10-13 07:12:28 (9168): Guest Log: Looking for outputfile HITS.46676269._091323.pool.root.1
2025-10-13 07:12:28 (9168): Guest Log: HITS file was successfully produced
2025-10-13 07:12:28 (9168): Guest Log: -rw-------. 1 atlas atlas 193522421 Oct 13 06:11 /home/atlas/RunAtlas/HITS.46676269._091323.pool.root.1
2025-10-13 07:12:29 (9168): Guest Log: Successfully finished the ATLAS job!
2025-10-13 07:12:29 (9168): Guest Log: Copying the results back to the shared directory!
2025-10-13 07:12:29 (9168): Guest Log:  *** Contents of shared directory: ***
2025-10-13 07:12:29 (9168): Guest Log: total 403836
2025-10-13 07:12:29 (9168): Guest Log: -rwxrwxrwx. 1 root root 218539522 Oct 13 04:30 ATLAS.root_0
2025-10-13 07:12:29 (9168): Guest Log: -rwxrwxrwx. 1 root root 193522421 Oct 13 06:12 HITS.pool.root.1
2025-10-13 07:12:29 (9168): Guest Log: -rwxrwxrwx. 1 root root      9083 Oct 13 04:30 init_data.xml
2025-10-13 07:12:29 (9168): Guest Log: -rwxrwxrwx. 1 root root    569674 Oct 13 03:27 input.tar.gz
2025-10-13 07:12:29 (9168): Guest Log: -rwxrwxrwx. 1 root root    860160 Oct 13 06:12 result.tar.gz
2025-10-13 07:12:29 (9168): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 13 03:27 start_atlas.sh
2025-10-13 07:12:29 (9168): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 07:12:29 (9168): VM Completion File Detected.
2025-10-13 07:12:29 (9168): Powering off VM.
2025-10-13 07:12:30 (9168): Successfully stopped VM.
2025-10-13 07:12:30 (9168): Deregistering VM. (boinc_225a1daf860ffee8, slot#1)
2025-10-13 07:12:30 (9168): Removing network bandwidth throttle group from VM.
2025-10-13 07:12:30 (9168): Removing VM from VirtualBox.
2025-10-13 07:12:36 (9168): called boinc_finish(0)

</stderr_txt>
]]>

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