Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:38:34 (436598): wrapper (7.7.26015): starting
23:38:34 (436598): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 23:38:34] Arguments: --nthreads 8
[2025-10-12 23:38:34] Threads: 8
[2025-10-12 23:38:34] Checking for CVMFS
[2025-10-12 23:38:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 23:38:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 23:38:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 23:38:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 23:38:35] 2.13.2.0 704839 125912 130184 151647 2 432 39154933 40960001 25692 16776704 1 301556514 99.702 234209173 35642 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 23:38:35] CVMFS is ok
[2025-10-12 23:38:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 23:38:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 23:38:35] Further information can be found at the LHC@home message board.
[2025-10-12 23:38:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 23:38:35] Checking for apptainer binary...
[2025-10-12 23:38:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 23:38:35] Running /usr/bin/apptainer --version
[2025-10-12 23:38:35] apptainer version 1.4.3-1.el9
[2025-10-12 23:38:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 23:38:35] c-212-4.aglt2.org
[2025-10-12 23:38:35] apptainer works
[2025-10-12 23:38:35] Set ATHENA_PROC_NUMBER=8
[2025-10-12 23:38:35] Set ATHENA_CORE_NUMBER=8
[2025-10-12 23:38:35] Starting ATLAS job with PandaID=6840748847
[2025-10-12 23:38:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:28:43]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:28:43] 2025-10-13 07:28:01,737 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 03:28:43] 2025-10-13 07:28:01,755 | INFO     | fitting pss+swap vs Time
[2025-10-13 03:28:43] 2025-10-13 07:28:01,756 | INFO     | sum of square deviations: 3532157338.7822022
[2025-10-13 03:28:43] 2025-10-13 07:28:01,782 | INFO     | sum of deviations: 120216272923.24884
[2025-10-13 03:28:43] 2025-10-13 07:28:01,783 | INFO     | mean x: 1760333608.191111
[2025-10-13 03:28:43] 2025-10-13 07:28:01,783 | INFO     | mean y: 2389482.9244444445
[2025-10-13 03:28:43] 2025-10-13 07:28:01,783 | INFO     | -- intersect: -59910214962.72899
[2025-10-13 03:28:43] 2025-10-13 07:28:01,783 | INFO     | intersect: -59910214962.72899
[2025-10-13 03:28:43] 2025-10-13 07:28:01,783 | INFO     | chi2: 3.8690229999373744
[2025-10-13 03:28:43] 2025-10-13 07:28:01,784 | INFO     | sum of square deviations: 3301827982.436357
[2025-10-13 03:28:43] 2025-10-13 07:28:01,785 | INFO     | sum of deviations: 131003165871.69101
[2025-10-13 03:28:43] 2025-10-13 07:28:01,785 | INFO     | mean x: 1760333455.6727273
[2025-10-13 03:28:43] 2025-10-13 07:28:01,785 | INFO     | mean y: 2396459.981818182
[2025-10-13 03:28:43] 2025-10-13 07:28:01,785 | INFO     | -- intersect: -69840507806.8901
[2025-10-13 03:28:43] 2025-10-13 07:28:01,785 | INFO     | intersect: -69840507806.8901
[2025-10-13 03:28:43] 2025-10-13 07:28:01,803 | INFO     | chi2: 3.1655571918562972
[2025-10-13 03:28:43] 2025-10-13 07:28:01,803 | INFO     | current chi2=3.1655571918562972 (change=18.182001194938973 %)
[2025-10-13 03:28:43] 2025-10-13 07:28:01,804 | INFO     | right removable region: 219
[2025-10-13 03:28:43] 2025-10-13 07:28:01,804 | INFO     | sum of square deviations: 3301870138.595451
[2025-10-13 03:28:43] 2025-10-13 07:28:01,805 | INFO     | sum of deviations: 61545807629.122765
[2025-10-13 03:28:43] 2025-10-13 07:28:01,805 | INFO     | mean x: 1760333760.6954546
[2025-10-13 03:28:43] 2025-10-13 07:28:01,805 | INFO     | mean y: 2428244.8227272728
[2025-10-13 03:28:43] 2025-10-13 07:28:01,805 | INFO     | -- intersect: -32809632330.309048
[2025-10-13 03:28:43] 2025-10-13 07:28:01,805 | INFO     | intersect: -32809632330.309048
[2025-10-13 03:28:43] 2025-10-13 07:28:01,806 | INFO     | chi2: 1.2119949137188222
[2025-10-13 03:28:43] 2025-10-13 07:28:01,806 | INFO     | current chi2=1.2119949137188222 (change=68.67439367151759 %)
[2025-10-13 03:28:43] 2025-10-13 07:28:01,806 | INFO     | sum of square deviations: 3081815688.3999887
[2025-10-13 03:28:43] 2025-10-13 07:28:01,829 | INFO     | sum of deviations: 40112375263.40002
[2025-10-13 03:28:43] 2025-10-13 07:28:01,830 | INFO     | mean x: 1760333913.2
[2025-10-13 03:28:43] 2025-10-13 07:28:01,830 | INFO     | mean y: 2443046.827906977
[2025-10-13 03:28:43] 2025-10-13 07:28:01,830 | INFO     | -- intersect: -22909756011.97681
[2025-10-13 03:28:43] 2025-10-13 07:28:01,830 | INFO     | intersect: -22909756011.97681
[2025-10-13 03:28:43] 2025-10-13 07:28:01,830 | INFO     | chi2: 0.9032238925210816
[2025-10-13 03:28:43] 2025-10-13 07:28:01,830 | INFO     | current chi2=0.9032238925210816 (change=25.476263778230194 %)
[2025-10-13 03:28:43] 2025-10-13 07:28:01,831 | INFO     | sum of square deviations: 2871774784.099994
[2025-10-13 03:28:43] 2025-10-13 07:28:01,832 | INFO     | sum of deviations: 29532668790.099976
[2025-10-13 03:28:43] 2025-10-13 07:28:01,832 | INFO     | mean x: 1760334065.7
[2025-10-13 03:28:43] 2025-10-13 07:28:01,832 | INFO     | mean y: 2450708.7
[2025-10-13 03:28:43] 2025-10-13 07:28:01,832 | INFO     | -- intersect: -18100418363.7927
[2025-10-13 03:28:43] 2025-10-13 07:28:01,832 | INFO     | intersect: -18100418363.7927
[2025-10-13 03:28:43] 2025-10-13 07:28:01,841 | INFO     | chi2: 0.848927283573201
[2025-10-13 03:28:43] 2025-10-13 07:28:01,841 | INFO     | current chi2=0.848927283573201 (change=6.011423014544898 %)
[2025-10-13 03:28:43] 2025-10-13 07:28:01,841 | INFO     | left removable region: 30
[2025-10-13 03:28:43] 2025-10-13 07:28:01,841 | INFO     | sum of square deviations: 2093472940.5185223
[2025-10-13 03:28:43] 2025-10-13 07:28:01,842 | INFO     | sum of deviations: 24185205276.888885
[2025-10-13 03:28:43] 2025-10-13 07:28:01,843 | INFO     | mean x: 1760334340.1851852
[2025-10-13 03:28:43] 2025-10-13 07:28:01,843 | INFO     | mean y: 2474227.4603174604
[2025-10-13 03:28:43] 2025-10-13 07:28:01,843 | INFO     | -- intersect: -20334090219.745052
[2025-10-13 03:28:43] 2025-10-13 07:28:01,843 | INFO     | intersect: -20334090219.745052
[2025-10-13 03:28:43] 2025-10-13 07:28:01,843 | INFO     | chi2: 0.09473067936525273
[2025-10-13 03:28:43] 2025-10-13 07:28:01,843 | INFO     | -- intersect: -20334090219.745052
[2025-10-13 03:28:43] 2025-10-13 07:28:01,843 | INFO     | current memory leak: 11.55 B/s (using 189 data points, chi2=0.09)
[2025-10-13 03:28:43] 2025-10-13 07:28:01,844 | INFO     | could have reported an average CPU frequency of 2968 MHz (11 samples)
[2025-10-13 03:28:43] 2025-10-13 07:28:01,844 | INFO     | ..............................
[2025-10-13 03:28:43] 2025-10-13 07:28:01,844 | INFO     | . Timing measurements:
[2025-10-13 03:28:43] 2025-10-13 07:28:01,853 | INFO     | . get job = 0 s
[2025-10-13 03:28:43] 2025-10-13 07:28:01,853 | INFO     | . initial setup = 3 s
[2025-10-13 03:28:43] 2025-10-13 07:28:01,853 | INFO     | . payload setup = 10 s
[2025-10-13 03:28:43] 2025-10-13 07:28:01,853 | INFO     | . stage-in = 0 s
[2025-10-13 03:28:43] 2025-10-13 07:28:01,853 | INFO     | . payload execution = 13683 s
[2025-10-13 03:28:43] 2025-10-13 07:28:01,853 | INFO     | . stage-out = 5 s
[2025-10-13 03:28:43] 2025-10-13 07:28:01,853 | INFO     | . log creation = 0 s
[2025-10-13 03:28:43] 2025-10-13 07:28:01,853 | INFO     | ..............................
[2025-10-13 03:28:43] 2025-10-13 07:28:02,127 | INFO     | 
[2025-10-13 03:28:43] 2025-10-13 07:28:02,128 | INFO     | job summary report
[2025-10-13 03:28:43] 2025-10-13 07:28:02,128 | INFO     | --------------------------------------------------
[2025-10-13 03:28:43] 2025-10-13 07:28:02,128 | INFO     | PanDA job id: 6840748847
[2025-10-13 03:28:43] 2025-10-13 07:28:02,128 | INFO     | task id: 46676269
[2025-10-13 03:28:43] 2025-10-13 07:28:02,128 | INFO     | errors: (none)
[2025-10-13 03:28:43] 2025-10-13 07:28:02,128 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 03:28:43] 2025-10-13 07:28:02,128 | INFO     | pilot state: finished 
[2025-10-13 03:28:43] 2025-10-13 07:28:02,129 | INFO     | transexitcode: 0
[2025-10-13 03:28:43] 2025-10-13 07:28:02,129 | INFO     | exeerrorcode: 0
[2025-10-13 03:28:43] 2025-10-13 07:28:02,129 | INFO     | exeerrordiag: 
[2025-10-13 03:28:43] 2025-10-13 07:28:02,129 | INFO     | exitcode: 0
[2025-10-13 03:28:43] 2025-10-13 07:28:02,129 | INFO     | exitmsg: OK
[2025-10-13 03:28:43] 2025-10-13 07:28:02,129 | INFO     | cpuconsumptiontime: 38611 s
[2025-10-13 03:28:43] 2025-10-13 07:28:02,129 | INFO     | nevents: 400
[2025-10-13 03:28:43] 2025-10-13 07:28:02,129 | INFO     | neventsw: 0
[2025-10-13 03:28:43] 2025-10-13 07:28:02,129 | INFO     | pid: 447164
[2025-10-13 03:28:43] 2025-10-13 07:28:02,129 | INFO     | pgrp: 447164
[2025-10-13 03:28:43] 2025-10-13 07:28:02,129 | INFO     | corecount: 8
[2025-10-13 03:28:43] 2025-10-13 07:28:02,129 | INFO     | event service: False
[2025-10-13 03:28:43] 2025-10-13 07:28:02,129 | INFO     | sizes: {0: 2348857, 9: 2349119, 11: 2349147, 13699: 2379469, 13705: 2388523, 13724: 2388661}
[2025-10-13 03:28:43] 2025-10-13 07:28:02,130 | INFO     | --------------------------------------------------
[2025-10-13 03:28:43] 2025-10-13 07:28:02,130 | INFO     | 
[2025-10-13 03:28:43] 2025-10-13 07:28:02,130 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-13 03:28:43] 2025-10-13 07:28:02,406 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 03:28:43] 2025-10-13 07:28:02,406 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 03:28:43] 2025-10-13 07:28:02,406 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 03:28:43] 2025-10-13 07:28:02,407 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 03:28:43] 2025-10-13 07:28:02,407 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 03:28:43] 2025-10-13 07:28:02,407 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 03:28:43] 2025-10-13 07:28:02,407 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 03:28:43] 2025-10-13 07:28:02,407 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 03:28:43] 2025-10-13 07:28:02,407 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 03:28:43] 2025-10-13 07:28:02,407 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 03:28:43] 2025-10-13 07:28:02,407 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 03:28:43] 2025-10-13 07:28:02,407 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 03:28:43] 2025-10-13 07:28:02,407 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 03:28:43] 2025-10-13 07:28:02,407 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 03:28:43] 2025-10-13 07:28:02,407 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 03:28:43] 2025-10-13 07:28:02,407 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 03:28:43] 2025-10-13 07:28:02,408 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 03:28:43] 2025-10-13 07:28:02,408 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 03:28:43] 2025-10-13 07:28:02,408 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 03:28:43] 2025-10-13 07:28:02,408 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 03:28:43] 2025-10-13 07:28:02,408 | INFO     | job 6840748847 has completed (purged errors)
[2025-10-13 03:28:43] 2025-10-13 07:28:02,408 | INFO     | overall cleanup function is called
[2025-10-13 03:28:43] 2025-10-13 07:28:03,470 | INFO     | --- collectZombieJob: --- 10, [447164]
[2025-10-13 03:28:43] 2025-10-13 07:28:03,471 | INFO     | zombie collector waiting for pid 447164
[2025-10-13 03:28:43] 2025-10-13 07:28:03,471 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 03:28:43] 2025-10-13 07:28:03,471 | INFO     | collected zombie processes
[2025-10-13 03:28:43] 2025-10-13 07:28:03,471 | INFO     | will attempt to kill all subprocesses of pid=447164
[2025-10-13 03:28:43] 2025-10-13 07:28:07,902 | INFO     | PID=440261 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 03:28:43] 2025-10-13 07:28:07,902 | INFO     | .. there are 25 such processes running
[2025-10-13 03:28:43] 2025-10-13 07:28:08,023 | INFO     | process IDs to be killed: [447164] (in reverse order)
[2025-10-13 03:28:43] 2025-10-13 07:28:08,447 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:28:43] 2025-10-13 07:28:08,448 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:28:43] 2025-10-13 07:28:08,484 | INFO     | did not find any defunct processes belonging to 447164
[2025-10-13 03:28:43] 2025-10-13 07:28:08,507 | INFO     | did not find any defunct processes belonging to 447164
[2025-10-13 03:28:43] 2025-10-13 07:28:08,508 | INFO     | ready for new job
[2025-10-13 03:28:43] 2025-10-13 07:28:08,508 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:28:43] 2025-10-13 07:28:08,510 | INFO     | ***************************************
[2025-10-13 03:28:43] 2025-10-13 07:28:08,510 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:28:43] 2025-10-13 07:28:08,511 | INFO     | ***************************************
[2025-10-13 03:28:43] 2025-10-13 07:28:08,511 | INFO     | 
[2025-10-13 03:28:43] 2025-10-13 07:28:08,516 | INFO     | architecture information:
[2025-10-13 03:28:43] 2025-10-13 07:28:08,517 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:28:43] 2025-10-13 07:28:08,542 | INFO     | cat /etc/os-release:
[2025-10-13 03:28:43] NAME="CentOS Linux"
[2025-10-13 03:28:43] VERSION="7 (Core)"
[2025-10-13 03:28:43] ID="centos"
[2025-10-13 03:28:43] ID_LIKE="rhel fedora"
[2025-10-13 03:28:43] VERSION_ID="7"
[2025-10-13 03:28:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:28:43] ANSI_COLOR="0;31"
[2025-10-13 03:28:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:28:43] HOME_URL="https://www.centos.org/"
[2025-10-13 03:28:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:28:43] 
[2025-10-13 03:28:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:28:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:28:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:28:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:28:43] 
[2025-10-13 03:28:43] 2025-10-13 07:28:08,542 | INFO     | ***************************************
[2025-10-13 03:28:43] 2025-10-13 07:28:09,057 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-13 03:28:43] 2025-10-13 07:28:09,116 | INFO     | sufficient remaining disk space (127046516736 B)
[2025-10-13 03:28:43] 2025-10-13 07:28:09,117 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:28:43] 2025-10-13 07:28:09,117 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:28:43] 2025-10-13 07:28:09,117 | INFO     | update_server=False
[2025-10-13 03:28:43] 2025-10-13 07:28:09,117 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:28:43] 2025-10-13 07:28:09,131 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:28:43] 2025-10-13 07:28:09,836 | INFO     | all data control threads have been joined
[2025-10-13 03:28:43] 2025-10-13 07:28:09,922 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:28:43] 2025-10-13 07:28:09,922 | INFO     | aborting loop
[2025-10-13 03:28:43] 2025-10-13 07:28:10,123 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:28:43] 2025-10-13 07:28:10,137 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:28:43] 2025-10-13 07:28:10,139 | INFO     | all job control threads have been joined
[2025-10-13 03:28:43] 2025-10-13 07:28:10,385 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:28:43] 2025-10-13 07:28:10,385 | INFO     | [job] validate thread has finished
[2025-10-13 03:28:43] 2025-10-13 07:28:10,388 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:28:43] 2025-10-13 07:28:10,403 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:28:43] 2025-10-13 07:28:10,452 | INFO     | all payload control threads have been joined
[2025-10-13 03:28:43] 2025-10-13 07:28:10,593 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:28:43] 2025-10-13 07:28:10,602 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:28:43] 2025-10-13 07:28:10,843 | INFO     | [data] control thread has finished
[2025-10-13 03:28:43] 2025-10-13 07:28:10,929 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:28:43] 2025-10-13 07:28:11,087 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:28:43] 2025-10-13 07:28:11,143 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:28:43] 2025-10-13 07:28:11,146 | INFO     | [job] control thread has finished
[2025-10-13 03:28:43] 2025-10-13 07:28:11,211 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:28:43] 2025-10-13 07:28:11,459 | INFO     | [payload] control thread has finished
[2025-10-13 03:28:43] 2025-10-13 07:28:12,063 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:28:43] 2025-10-13 07:28:12,217 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:28:43] 2025-10-13 07:28:16,073 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:28:43] 2025-10-13 07:28:20,501 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:28:43] 2025-10-13 07:28:21,541 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140330403120960)>', '<ExcThread(monitor, started 140329919436544)>']
[2025-10-13 03:28:43] 2025-10-13 07:28:26,566 | INFO     | all workflow threads have been joined
[2025-10-13 03:28:43] 2025-10-13 07:28:26,566 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:28:43] 2025-10-13 07:28:26,567 | INFO     | traces error code: 0
[2025-10-13 03:28:43] 2025-10-13 07:28:26,567 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:28:43] 2025-10-13 07:28:41,272 | INFO     | PID=440261 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 03:28:43] 2025-10-13 07:28:41,273 | INFO     | .. there are 25 such processes running
[2025-10-13 03:28:43] 2025-10-13 07:28:41,274 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:28:43] 2025-10-13 07:28:41,274 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:28:43] 2025-10-13 07:28:41,274 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:28:43] 2025-10-13 07:28:41,274 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:28:43] 2025-10-13 07:28:41,274 | INFO     | [monitor] control thread has ended
[2025-10-13 03:28:43] 2025-10-13 07:28:42,923 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:28:43] 2025-10-13 07:28:42,987 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:28:43] 2025-10-13 07:28:43,024 [wrapper] pilotpid: 440261
[2025-10-13 03:28:43] 2025-10-13 07:28:43,028 [wrapper] Pilot exit status: 0
[2025-10-13 03:28:43] 2025-10-13 07:28:43,065 [wrapper] pandaids: 6840748847
[2025-10-13 03:28:43] 2025-10-13 07:28:43,235 [wrapper] cleanup supervisor_pilot 1127818 440262
[2025-10-13 03:28:43] 2025-10-13 07:28:43,239 [wrapper] Test setup, not cleaning
[2025-10-13 03:28:43] 2025-10-13 07:28:43,243 [wrapper] apfmon messages muted
[2025-10-13 03:28:43] 2025-10-13 07:28:43,245 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:28:43] 2025-10-13 07:28:43,248 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:28:43]  *** Error codes and diagnostics ***
[2025-10-13 03:28:43]     "exeErrorCode": 0,
[2025-10-13 03:28:43]     "exeErrorDiag": "",
[2025-10-13 03:28:43]     "pilotErrorCode": 0,
[2025-10-13 03:28:43]     "pilotErrorDiag": "",
[2025-10-13 03:28:43]  *** Listing of results directory ***
[2025-10-13 03:28:43] total 415528
[2025-10-13 03:28:43] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 16:08 pilot3.tar.gz
[2025-10-13 03:28:43] -rwx------. 1 boincer umatlas     36292 Oct 12 16:15 runpilot2-wrapper.sh
[2025-10-13 03:28:43] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 16:15 queuedata.json
[2025-10-13 03:28:43] -rw-r--r--. 1 boincer umatlas       100 Oct 12 23:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:28:43] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 23:38 run_atlas
[2025-10-13 03:28:43] -rw-r--r--. 1 boincer umatlas       105 Oct 12 23:38 job.xml
[2025-10-13 03:28:43] -rw-r--r--. 2 boincer umatlas 222253763 Oct 12 23:38 EVNT.46676267._004489.pool.root.1
[2025-10-13 03:28:43] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 23:38 start_atlas.sh
[2025-10-13 03:28:43] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 23:38 shared
[2025-10-13 03:28:43] -rw-r--r--. 2 boincer umatlas    569673 Oct 12 23:38 input.tar.gz
[2025-10-13 03:28:43] -rw-r--r--. 1 boincer umatlas         0 Oct 12 23:38 boinc_lockfile
[2025-10-13 03:28:43] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 23:38 pandaJob.out
[2025-10-13 03:28:43] -rw-------. 1 boincer umatlas    974373 Oct 12 23:38 agis_schedconf.cvmfs.json
[2025-10-13 03:28:43] drwx------. 5 boincer umatlas      4096 Oct 12 23:38 pilot3
[2025-10-13 03:28:43] -rw-------. 1 boincer umatlas 194857668 Oct 13 03:26 HITS.46676269._088413.pool.root.1
[2025-10-13 03:28:43] -rw-r--r--. 1 boincer umatlas       530 Oct 13 03:26 boinc_task_state.xml
[2025-10-13 03:28:43] -rw-------. 1 boincer umatlas      1048 Oct 13 03:27 memory_monitor_summary.json
[2025-10-13 03:28:43] -rw-------. 1 boincer umatlas   1560580 Oct 13 03:27 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:28:43] -rw-------. 1 boincer umatlas    442848 Oct 13 03:27 log.46676269._088413.job.log.tgz.1
[2025-10-13 03:28:43] -rw-r--r--. 1 boincer umatlas      6947 Oct 13 03:27 init_data.xml
[2025-10-13 03:28:43] -rw-------. 1 boincer umatlas      7798 Oct 13 03:28 heartbeat.json
[2025-10-13 03:28:43] -rw-------. 1 boincer umatlas        95 Oct 13 03:28 pilot_heartbeat.json
[2025-10-13 03:28:43] -rw-------. 1 boincer umatlas       822 Oct 13 03:28 pilotlog.txt
[2025-10-13 03:28:43] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 03:28 boinc_mmap_file
[2025-10-13 03:28:43] -rw-r--r--. 1 boincer umatlas        28 Oct 13 03:28 wrapper_checkpoint.txt
[2025-10-13 03:28:43] -rw-------. 1 boincer umatlas   1799288 Oct 13 03:28 log.46676269._088413.job.log.1
[2025-10-13 03:28:43] -rw-------. 1 boincer umatlas       357 Oct 13 03:28 output.list
[2025-10-13 03:28:43] -rw-r--r--. 1 boincer umatlas       620 Oct 13 03:28 runtime_log
[2025-10-13 03:28:43] -rw-------. 1 boincer umatlas   2263040 Oct 13 03:28 result.tar.gz
[2025-10-13 03:28:43] -rw-------. 1 boincer umatlas       658 Oct 13 03:28 Sg2KDmweHS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmaPlNDmNDeY6m.diag
[2025-10-13 03:28:43] -rw-r--r--. 1 boincer umatlas      8699 Oct 13 03:28 runtime_log.err
[2025-10-13 03:28:43] -rw-r--r--. 1 boincer umatlas     21053 Oct 13 03:28 stderr.txt
[2025-10-13 03:28:43] HITS file was successfully produced:
[2025-10-13 03:28:43] -rw-------. 1 boincer umatlas 194857668 Oct 13 03:26 shared/HITS.pool.root.1
[2025-10-13 03:28:43]  *** Contents of shared directory: ***
[2025-10-13 03:28:43] total 410136
[2025-10-13 03:28:43] -rw-r--r--. 2 boincer umatlas 222253763 Oct 12 23:38 ATLAS.root_0
[2025-10-13 03:28:43] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 23:38 start_atlas.sh
[2025-10-13 03:28:43] -rw-r--r--. 2 boincer umatlas    569673 Oct 12 23:38 input.tar.gz
[2025-10-13 03:28:43] -rw-------. 1 boincer umatlas 194857668 Oct 13 03:26 HITS.pool.root.1
[2025-10-13 03:28:43] -rw-------. 1 boincer umatlas   2263040 Oct 13 03:28 result.tar.gz
03:28:45 (436598): run_atlas exited; CPU time 39079.018899
03:28:45 (436598): called boinc_finish(0)

</stderr_txt>
]]>

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