Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:15:59 (1459291): wrapper (7.7.26015): starting
15:15:59 (1459291): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 15:15:59] Arguments: --nthreads 4
[2025-10-13 15:15:59] Threads: 4
[2025-10-13 15:15:59] Checking for CVMFS
[2025-10-13 15:15:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 15:15:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 15:15:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 15:15:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 15:15:59] 2.9.2.0 3100 4173 97252 151662 2 56 31224937 36864001 0 130560 0 3797588 99.992 145609 733 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 15:15:59] CVMFS is ok
[2025-10-13 15:15:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 15:15:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 15:15:59] Further information can be found at the LHC@home message board.
[2025-10-13 15:15:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 15:15:59] Checking for apptainer binary...
[2025-10-13 15:15:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 15:15:59] Running /usr/bin/apptainer --version
[2025-10-13 15:15:59] apptainer version 1.4.1-1.1
[2025-10-13 15:15:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 15:15:59] thA338
[2025-10-13 15:15:59] apptainer works
[2025-10-13 15:15:59] Set ATHENA_PROC_NUMBER=4
[2025-10-13 15:15:59] Set ATHENA_CORE_NUMBER=4
[2025-10-13 15:15:59] Starting ATLAS job with PandaID=6840852567
[2025-10-13 15:15:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 16:27:18]  *** The last 200 lines of the pilot log: ***
[2025-10-13 16:27:18] 2025-10-13 14:26:42,380 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 16:27:18] 2025-10-13 14:26:42,380 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 16:27:18] 2025-10-13 14:26:42,380 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 16:27:18] 2025-10-13 14:26:42,381 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 16:27:18] 2025-10-13 14:26:42,381 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 16:27:18] 2025-10-13 14:26:42,381 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 16:27:18] 2025-10-13 14:26:42,381 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 16:27:18] 2025-10-13 14:26:42,381 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 16:27:18] 2025-10-13 14:26:42,381 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 16:27:18] 2025-10-13 14:26:42,381 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 16:27:18] 2025-10-13 14:26:42,381 | INFO     | job 6840852567 has completed (purged errors)
[2025-10-13 16:27:18] 2025-10-13 14:26:42,381 | INFO     | overall cleanup function is called
[2025-10-13 16:27:18] 2025-10-13 14:26:43,387 | INFO     | --- collectZombieJob: --- 10, [1469643]
[2025-10-13 16:27:18] 2025-10-13 14:26:43,388 | INFO     | zombie collector waiting for pid 1469643
[2025-10-13 16:27:18] 2025-10-13 14:26:43,388 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 16:27:18] 2025-10-13 14:26:43,388 | INFO     | collected zombie processes
[2025-10-13 16:27:18] 2025-10-13 14:26:43,388 | INFO     | will attempt to kill all subprocesses of pid=1469643
[2025-10-13 16:27:18] 2025-10-13 14:26:43,432 | INFO     | process IDs to be killed: [1469643] (in reverse order)
[2025-10-13 16:27:18] 2025-10-13 14:26:43,464 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 16:27:18] 2025-10-13 14:26:43,464 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 16:27:18] 2025-10-13 14:26:43,466 | INFO     | did not find any defunct processes belonging to 1469643
[2025-10-13 16:27:18] 2025-10-13 14:26:43,467 | INFO     | did not find any defunct processes belonging to 1469643
[2025-10-13 16:27:18] 2025-10-13 14:26:43,467 | INFO     | ready for new job
[2025-10-13 16:27:18] 2025-10-13 14:26:43,467 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 16:27:18] 2025-10-13 14:26:43,468 | INFO     | ***************************************
[2025-10-13 16:27:18] 2025-10-13 14:26:43,468 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 16:27:18] 2025-10-13 14:26:43,468 | INFO     | ***************************************
[2025-10-13 16:27:18] 2025-10-13 14:26:43,468 | INFO     | 
[2025-10-13 16:27:18] 2025-10-13 14:26:43,468 | INFO     | architecture information:
[2025-10-13 16:27:18] 2025-10-13 14:26:43,468 | INFO     | executing command: cat /etc/os-release
[2025-10-13 16:27:18] 2025-10-13 14:26:43,482 | INFO     | cat /etc/os-release:
[2025-10-13 16:27:18] NAME="CentOS Linux"
[2025-10-13 16:27:18] VERSION="7 (Core)"
[2025-10-13 16:27:18] ID="centos"
[2025-10-13 16:27:18] ID_LIKE="rhel fedora"
[2025-10-13 16:27:18] VERSION_ID="7"
[2025-10-13 16:27:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 16:27:18] ANSI_COLOR="0;31"
[2025-10-13 16:27:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 16:27:18] HOME_URL="https://www.centos.org/"
[2025-10-13 16:27:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 16:27:18] 
[2025-10-13 16:27:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 16:27:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 16:27:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 16:27:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 16:27:18] 
[2025-10-13 16:27:18] 2025-10-13 14:26:43,482 | INFO     | ***************************************
[2025-10-13 16:27:18] 2025-10-13 14:26:43,985 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 16:27:18] 2025-10-13 14:26:44,003 | INFO     | sufficient remaining disk space (228892606464 B)
[2025-10-13 16:27:18] 2025-10-13 14:26:44,003 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 16:27:18] 2025-10-13 14:26:44,004 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 16:27:18] 2025-10-13 14:26:44,004 | INFO     | update_server=False
[2025-10-13 16:27:18] 2025-10-13 14:26:44,004 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 16:27:18] 2025-10-13 14:26:44,004 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:27:18] 2025-10-13 14:26:44,004 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 16:27:18] 2025-10-13 14:26:44,004 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 16:27:18] 2025-10-13 14:26:44,004 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 16:27:18] 2025-10-13 14:26:44,004 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 16:27:18] 2025-10-13 14:26:44,004 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 16:27:18] 2025-10-13 14:26:44,225 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:27:18] 2025-10-13 14:26:44,225 | INFO     | aborting loop
[2025-10-13 16:27:18] 2025-10-13 14:26:44,480 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 16:27:18] 2025-10-13 14:26:44,564 | INFO     | all payload control threads have been joined
[2025-10-13 16:27:18] 2025-10-13 14:26:45,008 | INFO     | [job] queue monitor thread has finished
[2025-10-13 16:27:18] 2025-10-13 14:26:45,008 | INFO     | all data control threads have been joined
[2025-10-13 16:27:18] 2025-10-13 14:26:45,009 | INFO     | [job] retrieve thread has finished
[2025-10-13 16:27:18] 2025-10-13 14:26:45,231 | INFO     | [job] job monitor thread has finished
[2025-10-13 16:27:18] 2025-10-13 14:26:45,459 | INFO     | [payload] validate_post thread has finished
[2025-10-13 16:27:18] 2025-10-13 14:26:45,558 | INFO     | all job control threads have been joined
[2025-10-13 16:27:18] 2025-10-13 14:26:45,570 | INFO     | [payload] control thread has finished
[2025-10-13 16:27:18] 2025-10-13 14:26:45,839 | INFO     | [job] validate thread has finished
[2025-10-13 16:27:18] 2025-10-13 14:26:45,898 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 16:27:18] 2025-10-13 14:26:46,003 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 16:27:18] 2025-10-13 14:26:46,009 | INFO     | [data] copytool_out thread has finished
[2025-10-13 16:27:18] 2025-10-13 14:26:46,013 | INFO     | [data] control thread has finished
[2025-10-13 16:27:18] 2025-10-13 14:26:46,091 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 16:27:18] 2025-10-13 14:26:46,171 | INFO     | [data] copytool_in thread has finished
[2025-10-13 16:27:18] 2025-10-13 14:26:46,525 | INFO     | [payload] failed_post thread has finished
[2025-10-13 16:27:18] 2025-10-13 14:26:46,564 | INFO     | [job] control thread has finished
[2025-10-13 16:27:18] 2025-10-13 14:26:48,487 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 16:27:18] 2025-10-13 14:26:54,638 | INFO     | job.realtimelogging is not enabled
[2025-10-13 16:27:18] 2025-10-13 14:26:55,644 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 16:27:18] 2025-10-13 14:27:11,933 | INFO     | [monitor] cgroup control has ended
[2025-10-13 16:27:18] 2025-10-13 14:27:12,837 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140352264361792)>', '<ExcThread(monitor, started 140351335556864)>']
[2025-10-13 16:27:18] 2025-10-13 14:27:13,156 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 16:27:18] 2025-10-13 14:27:13,156 | INFO     | [monitor] control thread has ended
[2025-10-13 16:27:18] 2025-10-13 14:27:17,838 | INFO     | all workflow threads have been joined
[2025-10-13 16:27:18] 2025-10-13 14:27:17,838 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 16:27:18] 2025-10-13 14:27:17,839 | INFO     | traces error code: 0
[2025-10-13 16:27:18] 2025-10-13 14:27:17,839 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 16:27:18] 2025-10-13 14:27:17,916 [wrapper] ==== pilot stdout END ====
[2025-10-13 16:27:18] 2025-10-13 14:27:17,920 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 16:27:18] 2025-10-13 14:27:17,924 [wrapper] pilotpid: 1463069
[2025-10-13 16:27:18] 2025-10-13 14:27:17,927 [wrapper] Pilot exit status: 0
[2025-10-13 16:27:18] 2025-10-13 14:27:17,939 [wrapper] pandaids: 6840852567
[2025-10-13 16:27:18] 2025-10-13 14:27:17,960 [wrapper] cleanup supervisor_pilot 1479233 1463070
[2025-10-13 16:27:18] 2025-10-13 14:27:17,963 [wrapper] Test setup, not cleaning
[2025-10-13 16:27:18] 2025-10-13 14:27:17,967 [wrapper] apfmon messages muted
[2025-10-13 16:27:18] 2025-10-13 14:27:17,971 [wrapper] ==== wrapper stdout END ====
[2025-10-13 16:27:18] 2025-10-13 14:27:17,974 [wrapper] ==== wrapper stderr END ====
[2025-10-13 16:27:18]  *** Error codes and diagnostics ***
[2025-10-13 16:27:18]     "exeErrorCode": 0,
[2025-10-13 16:27:18]     "exeErrorDiag": "",
[2025-10-13 16:27:18]     "pilotErrorCode": 0,
[2025-10-13 16:27:18]     "pilotErrorDiag": "",
[2025-10-13 16:27:18]  *** Listing of results directory ***
[2025-10-13 16:27:18] total 409716
[2025-10-13 16:27:18] -rw-r--r-- 1 boinc boinc    557409 Oct 12 23:57 pilot3.tar.gz
[2025-10-13 16:27:18] -rw-r--r-- 1 boinc boinc      5112 Oct 13 00:41 queuedata.json
[2025-10-13 16:27:18] -rwx------ 1 boinc boinc     36292 Oct 13 00:43 runpilot2-wrapper.sh
[2025-10-13 16:27:18] -rw-r--r-- 1 boinc boinc       100 Oct 13 15:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 16:27:18] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 15:15 run_atlas
[2025-10-13 16:27:18] -rw-r--r-- 1 boinc boinc       105 Oct 13 15:15 job.xml
[2025-10-13 16:27:18] -rw-r--r-- 2 boinc boinc 222050455 Oct 13 15:15 EVNT.46676267._004627.pool.root.1
[2025-10-13 16:27:18] -rw-r--r-- 2 boinc boinc    569682 Oct 13 15:15 input.tar.gz
[2025-10-13 16:27:18] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:15 start_atlas.sh
[2025-10-13 16:27:18] drwxrwx--x 2 boinc boinc      4096 Oct 13 15:15 shared
[2025-10-13 16:27:18] -rw-r--r-- 1 boinc boinc         0 Oct 13 15:15 boinc_setup_complete
[2025-10-13 16:27:18] -rw-r--r-- 1 boinc boinc      6375 Oct 13 15:15 init_data.xml
[2025-10-13 16:27:18] -rw-r--r-- 1 boinc boinc         0 Oct 13 15:15 boinc_lockfile
[2025-10-13 16:27:18] -rw-r--r-- 1 boinc boinc      2549 Oct 13 15:15 pandaJob.out
[2025-10-13 16:27:18] -rw------- 1 boinc boinc    972489 Oct 13 15:16 agis_schedconf.cvmfs.json
[2025-10-13 16:27:18] -rw------- 1 boinc boinc   1560580 Oct 13 15:16 agis_ddmendpoints.agis.ALL.json
[2025-10-13 16:27:18] drwx------ 5 boinc boinc      4096 Oct 13 15:16 pilot3
[2025-10-13 16:27:18] -rw------- 1 boinc boinc 191820645 Oct 13 16:26 HITS.46676269._091396.pool.root.1
[2025-10-13 16:27:18] -rw-r--r-- 1 boinc boinc       530 Oct 13 16:26 boinc_task_state.xml
[2025-10-13 16:27:18] -rw------- 1 boinc boinc        95 Oct 13 16:26 pilot_heartbeat.json
[2025-10-13 16:27:18] -rw------- 1 boinc boinc      1019 Oct 13 16:26 memory_monitor_summary.json
[2025-10-13 16:27:18] -rw------- 1 boinc boinc    266182 Oct 13 16:26 log.46676269._091396.job.log.tgz.1
[2025-10-13 16:27:18] -rw------- 1 boinc boinc      7762 Oct 13 16:26 heartbeat.json
[2025-10-13 16:27:18] -rw-r--r-- 1 boinc boinc      8192 Oct 13 16:26 boinc_mmap_file
[2025-10-13 16:27:18] -rw-r--r-- 1 boinc boinc        27 Oct 13 16:26 wrapper_checkpoint.txt
[2025-10-13 16:27:18] -rw------- 1 boinc boinc      4628 Oct 13 16:27 pilotlog.txt
[2025-10-13 16:27:18] -rw------- 1 boinc boinc    629568 Oct 13 16:27 log.46676269._091396.job.log.1
[2025-10-13 16:27:18] -rw------- 1 boinc boinc       357 Oct 13 16:27 output.list
[2025-10-13 16:27:18] -rw-r--r-- 1 boinc boinc       620 Oct 13 16:27 runtime_log
[2025-10-13 16:27:18] -rw------- 1 boinc boinc    911360 Oct 13 16:27 result.tar.gz
[2025-10-13 16:27:18] -rw-r--r-- 1 boinc boinc      8777 Oct 13 16:27 runtime_log.err
[2025-10-13 16:27:18] -rw------- 1 boinc boinc       658 Oct 13 16:27 iOaKDmJyJS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm0CVMDmddu5hm.diag
[2025-10-13 16:27:18] -rw-r--r-- 1 boinc boinc     11841 Oct 13 16:27 stderr.txt
[2025-10-13 16:27:18] HITS file was successfully produced:
[2025-10-13 16:27:18] -rw------- 1 boinc boinc 191820645 Oct 13 16:26 shared/HITS.pool.root.1
[2025-10-13 16:27:18]  *** Contents of shared directory: ***
[2025-10-13 16:27:18] total 405652
[2025-10-13 16:27:18] -rw-r--r-- 2 boinc boinc 222050455 Oct 13 15:15 ATLAS.root_0
[2025-10-13 16:27:18] -rw-r--r-- 2 boinc boinc    569682 Oct 13 15:15 input.tar.gz
[2025-10-13 16:27:18] -rw-r--r-- 2 boinc boinc     15120 Oct 13 15:15 start_atlas.sh
[2025-10-13 16:27:18] -rw------- 1 boinc boinc 191820645 Oct 13 16:26 HITS.pool.root.1
[2025-10-13 16:27:18] -rw------- 1 boinc boinc    911360 Oct 13 16:27 result.tar.gz
16:27:19 (1459291): run_atlas exited; CPU time 16020.005126
16:27:19 (1459291): called boinc_finish(0)

</stderr_txt>
]]>

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