Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:33:38 (4193547): wrapper (7.7.26015): starting
19:33:38 (4193547): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 19:33:38] Arguments: --nthreads 6
[2025-10-13 19:33:38] Threads: 6
[2025-10-13 19:33:38] Checking for CVMFS
[2025-10-13 19:33:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 19:33:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 19:33:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 19:33:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 19:33:39] 2.12.7.0 249871 7196 94464 151658 3 188 14042666 20971520 929 130560 0 12269129 99.995 248873 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-13 19:33:39] CVMFS is ok
[2025-10-13 19:33:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 19:33:39] Checking for apptainer binary...
[2025-10-13 19:33:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 19:33:39] Running /usr/bin/apptainer --version
[2025-10-13 19:33:39] apptainer version 1.4.0-1.el9
[2025-10-13 19:33:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 19:33:39] testio005
[2025-10-13 19:33:39] apptainer works
[2025-10-13 19:33:39] Set ATHENA_PROC_NUMBER=6
[2025-10-13 19:33:39] Set ATHENA_CORE_NUMBER=6
[2025-10-13 19:33:39] Starting ATLAS job with PandaID=6840850937
[2025-10-13 19:33:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 21:01:02]  *** The last 200 lines of the pilot log: ***
[2025-10-13 21:01:02] 2025-10-13 11:59:52,152 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 21:01:02] 2025-10-13 11:59:52,739 | INFO     | time since job start (5163s) is within the limit (172800.0s)
[2025-10-13 21:01:02] 2025-10-13 11:59:54,655 | INFO     | monitor loop #401: job 0:6840850937 is in state 'finished'
[2025-10-13 21:01:02] 2025-10-13 11:59:54,655 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 21:01:02] 2025-10-13 11:59:54,745 | INFO     | time since job start (5165s) is within the limit (172800.0s)
[2025-10-13 21:01:02] 2025-10-13 11:59:56,750 | INFO     | time since job start (5167s) is within the limit (172800.0s)
[2025-10-13 21:01:02] 2025-10-13 11:59:57,158 | INFO     | monitor loop #402: job 0:6840850937 is in state 'finished'
[2025-10-13 21:01:02] 2025-10-13 11:59:57,158 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 21:01:02] 2025-10-13 11:59:58,756 | INFO     | time since job start (5169s) is within the limit (172800.0s)
[2025-10-13 21:01:02] 2025-10-13 11:59:59,661 | INFO     | monitor loop #403: job 0:6840850937 is in state 'finished'
[2025-10-13 21:01:02] 2025-10-13 11:59:59,662 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 21:01:02] 2025-10-13 12:00:00,761 | INFO     | time since job start (5171s) is within the limit (172800.0s)
[2025-10-13 21:01:02] 2025-10-13 12:00:01,859 | INFO     | PID=3650 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 21:01:02] 2025-10-13 12:00:01,859 | INFO     | .. there are 2 such processes running
[2025-10-13 21:01:02] 2025-10-13 12:00:02,164 | INFO     | monitor loop #404: job 0:6840850937 is in state 'finished'
[2025-10-13 21:01:02] 2025-10-13 12:00:02,165 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 21:01:02] 2025-10-13 12:00:02,859 | INFO     | time since job start (5173s) is within the limit (172800.0s)
[2025-10-13 21:01:02] 2025-10-13 12:00:04,667 | INFO     | monitor loop #405: job 0:6840850937 is in state 'finished'
[2025-10-13 21:01:02] 2025-10-13 12:00:04,667 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 21:01:02] 2025-10-13 12:00:04,865 | INFO     | time since job start (5175s) is within the limit (172800.0s)
[2025-10-13 21:01:02] 2025-10-13 12:00:06,869 | INFO     | time since job start (5177s) is within the limit (172800.0s)
[2025-10-13 21:01:02] 2025-10-13 12:00:07,170 | INFO     | monitor loop #406: job 0:6840850937 is in state 'finished'
[2025-10-13 21:01:02] 2025-10-13 12:00:07,170 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 21:01:02] 2025-10-13 12:00:08,870 | INFO     | time since job start (5179s) is within the limit (172800.0s)
[2025-10-13 21:01:02] 2025-10-13 12:00:09,673 | INFO     | monitor loop #407: job 0:6840850937 is in state 'finished'
[2025-10-13 21:01:02] 2025-10-13 12:00:09,673 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 21:01:02] 2025-10-13 12:00:10,875 | INFO     | time since job start (5181s) is within the limit (172800.0s)
[2025-10-13 21:01:02] 2025-10-13 12:00:12,176 | INFO     | monitor loop #408: job 0:6840850937 is in state 'finished'
[2025-10-13 21:01:02] 2025-10-13 12:00:12,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 21:01:02] 2025-10-13 12:00:12,880 | INFO     | time since job start (5183s) is within the limit (172800.0s)
[2025-10-13 21:01:02] 2025-10-13 12:00:14,678 | INFO     | monitor loop #409: job 0:6840850937 is in state 'finished'
[2025-10-13 21:01:02] 2025-10-13 12:00:14,678 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 21:01:02] 2025-10-13 12:00:14,886 | INFO     | time since job start (5185s) is within the limit (172800.0s)
[2025-10-13 21:01:02] 2025-10-13 12:00:15,358 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 21:01:02] 2025-10-13 12:00:15,360 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3322.6369374999995
[2025-10-13 21:01:02] 2025-10-13 12:00:15,362 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6840850937/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 21:01:02] 2025-10-13 12:00:15,363 | INFO     | extracted standard info from prmon json
[2025-10-13 21:01:02] 2025-10-13 12:00:15,363 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 21:01:02] 2025-10-13 12:00:15,363 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 21:01:02] 2025-10-13 12:00:15,363 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 21:01:02] 2025-10-13 12:00:15,363 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 21:01:02] 2025-10-13 12:00:15,364 | INFO     | fitting pss+swap vs Time
[2025-10-13 21:01:02] 2025-10-13 12:00:15,364 | INFO     | sum of square deviations: 141538308.8831167
[2025-10-13 21:01:02] 2025-10-13 12:00:15,365 | INFO     | sum of deviations: -5422035745.272727
[2025-10-13 21:01:02] 2025-10-13 12:00:15,365 | INFO     | mean x: 1760354275.038961
[2025-10-13 21:01:02] 2025-10-13 12:00:15,365 | INFO     | mean y: 2508189.090909091
[2025-10-13 21:01:02] 2025-10-13 12:00:15,365 | INFO     | -- intersect: 67437988229.24729
[2025-10-13 21:01:02] 2025-10-13 12:00:15,365 | INFO     | intersect: 67437988229.24729
[2025-10-13 21:01:02] 2025-10-13 12:00:15,365 | INFO     | chi2: 0.07566199560287473
[2025-10-13 21:01:02] 2025-10-13 12:00:15,365 | INFO     | -- intersect: 67437988229.24729
[2025-10-13 21:01:02] 2025-10-13 12:00:15,365 | INFO     | current memory leak: -38.31 B/s (using 77 data points, chi2=0.08)
[2025-10-13 21:01:02] 2025-10-13 12:00:15,365 | INFO     | could have reported an average CPU frequency of 3320 MHz (6 samples)
[2025-10-13 21:01:02] 2025-10-13 12:00:15,365 | INFO     | ..............................
[2025-10-13 21:01:02] 2025-10-13 12:00:15,366 | INFO     | . Timing measurements:
[2025-10-13 21:01:02] 2025-10-13 12:00:15,366 | INFO     | . get job = 0 s
[2025-10-13 21:01:02] 2025-10-13 12:00:15,366 | INFO     | . initial setup = 4 s
[2025-10-13 21:01:02] 2025-10-13 12:00:15,366 | INFO     | . payload setup = 4 s
[2025-10-13 21:01:02] 2025-10-13 12:00:15,366 | INFO     | . stage-in = 0 s
[2025-10-13 21:01:02] 2025-10-13 12:00:15,366 | INFO     | . payload execution = 5084 s
[2025-10-13 21:01:02] 2025-10-13 12:00:15,366 | INFO     | . stage-out = 0 s
[2025-10-13 21:01:02] 2025-10-13 12:00:15,366 | INFO     | . log creation = 0 s
[2025-10-13 21:01:02] 2025-10-13 12:00:15,366 | INFO     | ..............................
[2025-10-13 21:01:02] 2025-10-13 12:00:15,428 | INFO     | 
[2025-10-13 21:01:02] 2025-10-13 12:00:15,428 | INFO     | job summary report
[2025-10-13 21:01:02] 2025-10-13 12:00:15,428 | INFO     | --------------------------------------------------
[2025-10-13 21:01:02] 2025-10-13 12:00:15,428 | INFO     | PanDA job id: 6840850937
[2025-10-13 21:01:02] 2025-10-13 12:00:15,428 | INFO     | task id: 46676269
[2025-10-13 21:01:02] 2025-10-13 12:00:15,428 | INFO     | errors: (none)
[2025-10-13 21:01:02] 2025-10-13 12:00:15,428 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 21:01:02] 2025-10-13 12:00:15,429 | INFO     | pilot state: finished 
[2025-10-13 21:01:02] 2025-10-13 12:00:15,429 | INFO     | transexitcode: 0
[2025-10-13 21:01:02] 2025-10-13 12:00:15,429 | INFO     | exeerrorcode: 0
[2025-10-13 21:01:02] 2025-10-13 12:00:15,429 | INFO     | exeerrordiag: 
[2025-10-13 21:01:02] 2025-10-13 12:00:15,429 | INFO     | exitcode: 0
[2025-10-13 21:01:02] 2025-10-13 12:00:15,429 | INFO     | exitmsg: OK
[2025-10-13 21:01:02] 2025-10-13 12:00:15,429 | INFO     | cpuconsumptiontime: 28001 s
[2025-10-13 21:01:02] 2025-10-13 12:00:15,429 | INFO     | nevents: 400
[2025-10-13 21:01:02] 2025-10-13 12:00:15,429 | INFO     | neventsw: 0
[2025-10-13 21:01:02] 2025-10-13 12:00:15,429 | INFO     | pid: 10396
[2025-10-13 21:01:02] 2025-10-13 12:00:15,429 | INFO     | pgrp: 10396
[2025-10-13 21:01:02] 2025-10-13 12:00:15,429 | INFO     | corecount: 6
[2025-10-13 21:01:02] 2025-10-13 12:00:15,429 | INFO     | event service: False
[2025-10-13 21:01:02] 2025-10-13 12:00:15,429 | INFO     | sizes: {0: 2348857, 1: 2348857, 4: 2349147, 11: 2349175, 5092: 2375536, 5093: 2384534, 5094: 2384718, 5172: 2384912}
[2025-10-13 21:01:02] 2025-10-13 12:00:15,429 | INFO     | --------------------------------------------------
[2025-10-13 21:01:02] 2025-10-13 12:00:15,429 | INFO     | 
[2025-10-13 21:01:02] 2025-10-13 12:00:15,429 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-13 21:01:02] 2025-10-13 12:00:15,443 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 21:01:02] 2025-10-13 12:00:15,443 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 21:01:02] 2025-10-13 12:00:15,443 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 21:01:02] 2025-10-13 12:00:15,443 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 21:01:02] 2025-10-13 12:00:15,444 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 21:01:02] 2025-10-13 12:00:15,444 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 21:01:02] 2025-10-13 12:00:15,444 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 21:01:02] 2025-10-13 12:00:15,444 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 21:01:02] 2025-10-13 12:00:15,444 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 21:01:02] 2025-10-13 12:00:15,444 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 21:01:02] 2025-10-13 12:00:15,444 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 21:01:02] 2025-10-13 12:00:15,444 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 21:01:02] 2025-10-13 12:00:15,444 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 21:01:02] 2025-10-13 12:00:15,445 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 21:01:02] 2025-10-13 12:00:15,445 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 21:01:02] 2025-10-13 12:00:15,445 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 21:01:02] 2025-10-13 12:00:15,445 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 21:01:02] 2025-10-13 12:00:15,445 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 21:01:02] 2025-10-13 12:00:15,445 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 21:01:02] 2025-10-13 12:00:15,445 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 21:01:02] 2025-10-13 12:00:15,445 | INFO     | job 6840850937 has completed (purged errors)
[2025-10-13 21:01:02] 2025-10-13 12:00:15,445 | INFO     | overall cleanup function is called
[2025-10-13 21:01:02] 2025-10-13 12:00:16,451 | INFO     | --- collectZombieJob: --- 10, [10396]
[2025-10-13 21:01:02] 2025-10-13 12:00:16,451 | INFO     | zombie collector waiting for pid 10396
[2025-10-13 21:01:02] 2025-10-13 12:00:16,451 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 21:01:02] 2025-10-13 12:00:16,452 | INFO     | collected zombie processes
[2025-10-13 21:01:02] 2025-10-13 12:00:16,452 | INFO     | will attempt to kill all subprocesses of pid=10396
[2025-10-13 21:01:02] 2025-10-13 12:00:16,529 | INFO     | process IDs to be killed: [10396] (in reverse order)
[2025-10-13 21:01:02] 2025-10-13 12:00:16,571 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 21:01:02] 2025-10-13 12:00:16,571 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 21:01:02] 2025-10-13 12:00:16,574 | INFO     | did not find any defunct processes belonging to 10396
[2025-10-13 21:01:02] 2025-10-13 12:00:16,577 | INFO     | did not find any defunct processes belonging to 10396
[2025-10-13 21:01:02] 2025-10-13 12:00:16,577 | INFO     | ready for new job
[2025-10-13 21:01:02] 2025-10-13 12:00:16,577 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 21:01:02] 2025-10-13 12:00:16,578 | INFO     | ***************************************
[2025-10-13 21:01:02] 2025-10-13 12:00:16,578 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 21:01:02] 2025-10-13 12:00:16,578 | INFO     | ***************************************
[2025-10-13 21:01:02] 2025-10-13 12:00:16,578 | INFO     | 
[2025-10-13 21:01:02] 2025-10-13 12:00:16,579 | INFO     | architecture information:
[2025-10-13 21:01:02] 2025-10-13 12:00:16,579 | INFO     | executing command: cat /etc/os-release
[2025-10-13 21:01:02] 2025-10-13 12:00:16,591 | INFO     | cat /etc/os-release:
[2025-10-13 21:01:02] NAME="CentOS Linux"
[2025-10-13 21:01:02] VERSION="7 (Core)"
[2025-10-13 21:01:02] ID="centos"
[2025-10-13 21:01:02] ID_LIKE="rhel fedora"
[2025-10-13 21:01:02] VERSION_ID="7"
[2025-10-13 21:01:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 21:01:02] ANSI_COLOR="0;31"
[2025-10-13 21:01:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 21:01:02] HOME_URL="https://www.centos.org/"
[2025-10-13 21:01:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 21:01:02] 
[2025-10-13 21:01:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 21:01:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 21:01:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 21:01:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 21:01:02] 
[2025-10-13 21:01:02] 2025-10-13 12:00:16,592 | INFO     | ***************************************
[2025-10-13 21:01:02] 2025-10-13 12:00:17,093 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-13 21:01:02] 2025-10-13 12:00:17,106 | INFO     | sufficient remaining disk space (97240743936 B)
[2025-10-13 21:01:02] 2025-10-13 12:00:17,106 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 21:01:02] 2025-10-13 12:00:17,107 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 21:01:02] 2025-10-13 12:00:17,107 | INFO     | update_server=False
[2025-10-13 21:01:02] 2025-10-13 12:00:17,107 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 21:01:02] 2025-10-13 12:00:17,107 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:01:02] 2025-10-13 12:00:17,107 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 21:01:02] 2025-10-13 12:00:17,181 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 21:01:02] 2025-10-13 12:00:17,182 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 21:01:02] 2025-10-13 12:00:17,182 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:01:02] 2025-10-13 12:00:17,182 | INFO     | will abort loop
[2025-10-13 21:01:02] 2025-10-13 12:00:17,768 | INFO     | all data control threads have been joined
[2025-10-13 21:01:02] 2025-10-13 12:00:18,107 | INFO     | [job] retrieve thread has finished
[2025-10-13 21:01:02] 2025-10-13 12:00:18,112 | INFO     | [job] queue monitor thread has finished
[2025-10-13 21:01:02] 2025-10-13 12:00:18,187 | INFO     | [job] job monitor thread has finished
[2025-10-13 21:01:02] 2025-10-13 12:00:18,210 | INFO     | all payload control threads have been joined
[2025-10-13 21:01:02] 2025-10-13 12:00:18,355 | INFO     | [payload] validate_post thread has finished
[2025-10-13 21:01:02] 2025-10-13 12:00:18,430 | INFO     | [job] validate thread has finished
[2025-10-13 21:01:02] 2025-10-13 12:00:18,588 | INFO     | all job control threads have been joined
[2025-10-13 21:01:02] 2025-10-13 12:00:18,589 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 21:01:02] 2025-10-13 12:00:18,703 | INFO     | [payload] failed_post thread has finished
[2025-10-13 21:01:02] 2025-10-13 12:00:18,773 | INFO     | [data] control thread has finished
[2025-10-13 21:01:02] 2025-10-13 12:00:18,808 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 21:01:02] 2025-10-13 12:00:19,112 | INFO     | [data] copytool_out thread has finished
[2025-10-13 21:01:02] 2025-10-13 12:00:19,186 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 21:01:02] 2025-10-13 12:00:19,215 | INFO     | [payload] control thread has finished
[2025-10-13 21:01:02] 2025-10-13 12:00:19,272 | INFO     | [data] copytool_in thread has finished
[2025-10-13 21:01:02] 2025-10-13 12:00:19,594 | INFO     | [job] control thread has finished
[2025-10-13 21:01:02] 2025-10-13 12:00:20,150 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 21:01:02] 2025-10-13 12:00:24,152 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 21:01:02] 2025-10-13 12:00:27,630 | INFO     | job.realtimelogging is not enabled
[2025-10-13 21:01:02] 2025-10-13 12:00:28,635 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 21:01:02] 2025-10-13 12:00:48,053 | INFO     | PID=3650 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 21:01:02] 2025-10-13 12:00:48,053 | INFO     | .. there are 2 such processes running
[2025-10-13 21:01:02] 2025-10-13 12:00:48,054 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 21:01:02] 2025-10-13 12:00:48,054 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 21:01:02] 2025-10-13 12:00:48,054 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 21:01:02] 2025-10-13 12:00:56,491 | INFO     | [monitor] cgroup control has ended
[2025-10-13 21:01:02] 2025-10-13 12:00:57,691 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140680282961728)>', '<ExcThread(monitor, started 140679565010688)>']
[2025-10-13 21:01:02] 2025-10-13 12:00:58,091 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 21:01:02] 2025-10-13 12:00:58,092 | INFO     | [monitor] control thread has ended
[2025-10-13 21:01:02] 2025-10-13 12:01:02,717 | INFO     | all workflow threads have been joined
[2025-10-13 21:01:02] 2025-10-13 12:01:02,717 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 21:01:02] 2025-10-13 12:01:02,717 | INFO     | traces error code: 0
[2025-10-13 21:01:02] 2025-10-13 12:01:02,717 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 21:01:02] 2025-10-13 12:01:02,794 [wrapper] ==== pilot stdout END ====
[2025-10-13 21:01:02] 2025-10-13 12:01:02,796 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 21:01:02] 2025-10-13 12:01:02,798 [wrapper] pilotpid: 3650
[2025-10-13 21:01:02] 2025-10-13 12:01:02,800 [wrapper] Pilot exit status: 0
[2025-10-13 21:01:02] 2025-10-13 12:01:02,808 [wrapper] pandaids: 6840850937
[2025-10-13 21:01:02] 2025-10-13 12:01:02,834 [wrapper] cleanup supervisor_pilot   47047 3651
[2025-10-13 21:01:02] 2025-10-13 12:01:02,836 [wrapper] Test setup, not cleaning
[2025-10-13 21:01:02] 2025-10-13 12:01:02,839 [wrapper] apfmon messages muted
[2025-10-13 21:01:02] 2025-10-13 12:01:02,841 [wrapper] ==== wrapper stdout END ====
[2025-10-13 21:01:02] 2025-10-13 12:01:02,843 [wrapper] ==== wrapper stderr END ====
[2025-10-13 21:01:02]  *** Error codes and diagnostics ***
[2025-10-13 21:01:02]     "exeErrorCode": 0,
[2025-10-13 21:01:02]     "exeErrorDiag": "",
[2025-10-13 21:01:02]     "pilotErrorCode": 0,
[2025-10-13 21:01:02]     "pilotErrorDiag": "",
[2025-10-13 21:01:02]  *** Listing of results directory ***
[2025-10-13 21:01:02] total 398820
[2025-10-13 21:01:02] -rw-r--r--. 1 boinc boinc    557409 Oct 13 06:57 pilot3.tar.gz
[2025-10-13 21:01:02] -rw-r--r--. 1 boinc boinc      5112 Oct 13 07:18 queuedata.json
[2025-10-13 21:01:02] -rwx------. 1 boinc boinc     36292 Oct 13 07:19 runpilot2-wrapper.sh
[2025-10-13 21:01:02] -rw-r--r--. 1 boinc boinc       100 Oct 13 19:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 21:01:02] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 19:33 run_atlas
[2025-10-13 21:01:02] -rw-r--r--. 1 boinc boinc       105 Oct 13 19:33 job.xml
[2025-10-13 21:01:02] -rw-r--r--. 2 boinc boinc 219458823 Oct 13 19:33 EVNT.46676267._004607.pool.root.1
[2025-10-13 21:01:02] -rw-r--r--. 2 boinc boinc     15120 Oct 13 19:33 start_atlas.sh
[2025-10-13 21:01:02] drwxrwx--x. 2 boinc boinc        68 Oct 13 19:33 shared
[2025-10-13 21:01:02] -rw-r--r--. 2 boinc boinc    569677 Oct 13 19:33 input.tar.gz
[2025-10-13 21:01:02] -rw-r--r--. 1 boinc boinc      9362 Oct 13 19:33 init_data.xml
[2025-10-13 21:01:02] -rw-r--r--. 1 boinc boinc         0 Oct 13 19:33 boinc_lockfile
[2025-10-13 21:01:02] -rw-r--r--. 1 boinc boinc      2550 Oct 13 19:33 pandaJob.out
[2025-10-13 21:01:02] -rw-------. 1 boinc boinc    972497 Oct 13 19:33 agis_schedconf.cvmfs.json
[2025-10-13 21:01:02] -rw-------. 1 boinc boinc   1560580 Oct 13 19:33 agis_ddmendpoints.agis.ALL.json
[2025-10-13 21:01:02] drwx------. 5 boinc boinc      4096 Oct 13 19:33 pilot3
[2025-10-13 21:01:02] -rw-------. 1 boinc boinc 182937243 Oct 13 20:58 HITS.46676269._090885.pool.root.1
[2025-10-13 21:01:02] -rw-r--r--. 1 boinc boinc       529 Oct 13 20:58 boinc_task_state.xml
[2025-10-13 21:01:02] -rw-------. 1 boinc boinc      1015 Oct 13 20:58 memory_monitor_summary.json
[2025-10-13 21:01:02] -rw-------. 1 boinc boinc    293699 Oct 13 20:58 log.46676269._090885.job.log.tgz.1
[2025-10-13 21:01:02] -rw-------. 1 boinc boinc      7750 Oct 13 21:00 heartbeat.json
[2025-10-13 21:01:02] -rw-r--r--. 1 boinc boinc        27 Oct 13 21:00 wrapper_checkpoint.txt
[2025-10-13 21:01:02] -rw-r--r--. 1 boinc boinc      8192 Oct 13 21:00 boinc_mmap_file
[2025-10-13 21:01:02] -rw-------. 1 boinc boinc        95 Oct 13 21:00 pilot_heartbeat.json
[2025-10-13 21:01:02] -rw-------. 1 boinc boinc      5078 Oct 13 21:01 pilotlog.txt
[2025-10-13 21:01:02] -rw-------. 1 boinc boinc    757509 Oct 13 21:01 log.46676269._090885.job.log.1
[2025-10-13 21:01:02] -rw-------. 1 boinc boinc       357 Oct 13 21:01 output.list
[2025-10-13 21:01:02] -rw-r--r--. 1 boinc boinc       620 Oct 13 21:01 runtime_log
[2025-10-13 21:01:02] -rw-------. 1 boinc boinc   1075200 Oct 13 21:01 result.tar.gz
[2025-10-13 21:01:02] -rw-r--r--. 1 boinc boinc      8661 Oct 13 21:01 runtime_log.err
[2025-10-13 21:01:02] -rw-------. 1 boinc boinc       641 Oct 13 21:01 d5INDmYaJS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2plNDmVocqBn.diag
[2025-10-13 21:01:02] -rw-r--r--. 1 boinc boinc     21932 Oct 13 21:01 stderr.txt
[2025-10-13 21:01:02] HITS file was successfully produced:
[2025-10-13 21:01:02] -rw-------. 1 boinc boinc 182937243 Oct 13 20:58 shared/HITS.pool.root.1
[2025-10-13 21:01:02]  *** Contents of shared directory: ***
[2025-10-13 21:01:02] total 394596
[2025-10-13 21:01:02] -rw-r--r--. 2 boinc boinc 219458823 Oct 13 19:33 ATLAS.root_0
[2025-10-13 21:01:02] -rw-r--r--. 2 boinc boinc     15120 Oct 13 19:33 start_atlas.sh
[2025-10-13 21:01:02] -rw-r--r--. 2 boinc boinc    569677 Oct 13 19:33 input.tar.gz
[2025-10-13 21:01:02] -rw-------. 1 boinc boinc 182937243 Oct 13 20:58 HITS.pool.root.1
[2025-10-13 21:01:02] -rw-------. 1 boinc boinc   1075200 Oct 13 21:01 result.tar.gz
21:01:04 (4193547): run_atlas exited; CPU time 28054.590544
21:01:04 (4193547): called boinc_finish(0)

</stderr_txt>
]]>

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