Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:15:31 (4173516): wrapper (7.7.26015): starting
19:15:31 (4173516): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 19:15:31] Arguments: --nthreads 6
[2025-10-13 19:15:31] Threads: 6
[2025-10-13 19:15:31] Checking for CVMFS
[2025-10-13 19:15:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 19:15:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 19:15:31] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 19:15:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 19:15:32] 2.12.7.0 249871 7178 96488 151658 1 56 14034013 20971521 929 130560 0 12205704 99.996 248791 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-13 19:15:32] CVMFS is ok
[2025-10-13 19:15:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 19:15:32] Checking for apptainer binary...
[2025-10-13 19:15:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 19:15:32] Running /usr/bin/apptainer --version
[2025-10-13 19:15:32] apptainer version 1.4.0-1.el9
[2025-10-13 19:15:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 19:15:32] testio005
[2025-10-13 19:15:32] apptainer works
[2025-10-13 19:15:32] Set ATHENA_PROC_NUMBER=6
[2025-10-13 19:15:32] Set ATHENA_CORE_NUMBER=6
[2025-10-13 19:15:32] Starting ATLAS job with PandaID=6840850958
[2025-10-13 19:15:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 20:43:02]  *** The last 200 lines of the pilot log: ***
[2025-10-13 20:43:02] 2025-10-13 11:42:11,173 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 20:43:02] 2025-10-13 11:42:11,173 | INFO     | log transfer has been attempted: DONE
[2025-10-13 20:43:02] 2025-10-13 11:42:11,173 | INFO     | job 6840850958 has finished - writing final server update
[2025-10-13 20:43:02] 2025-10-13 11:42:11,173 | INFO     | total number of processed events: 400 (read)
[2025-10-13 20:43:02] 2025-10-13 11:42:11,174 | INFO     | executing command: lscpu
[2025-10-13 20:43:02] 2025-10-13 11:42:11,192 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 20:43:02] 2025-10-13 11:42:11,362 | INFO     | time since job start (5185s) is within the limit (172800.0s)
[2025-10-13 20:43:02] 2025-10-13 11:42:11,790 | INFO     | monitor loop #383: job 0:6840850958 is in state 'finished'
[2025-10-13 20:43:02] 2025-10-13 11:42:11,791 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 20:43:02] 2025-10-13 11:42:13,368 | INFO     | time since job start (5187s) is within the limit (172800.0s)
[2025-10-13 20:43:02] 2025-10-13 11:42:14,293 | INFO     | monitor loop #384: job 0:6840850958 is in state 'finished'
[2025-10-13 20:43:02] 2025-10-13 11:42:14,294 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 20:43:02] 2025-10-13 11:42:15,373 | INFO     | time since job start (5189s) is within the limit (172800.0s)
[2025-10-13 20:43:02] 2025-10-13 11:42:16,796 | INFO     | monitor loop #385: job 0:6840850958 is in state 'finished'
[2025-10-13 20:43:02] 2025-10-13 11:42:16,797 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 20:43:02] 2025-10-13 11:42:17,379 | INFO     | time since job start (5191s) is within the limit (172800.0s)
[2025-10-13 20:43:02] 2025-10-13 11:42:18,481 | INFO     | PID=4177310 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 20:43:02] 2025-10-13 11:42:18,481 | INFO     | .. there are 2 such processes running
[2025-10-13 20:43:02] 2025-10-13 11:42:19,299 | INFO     | monitor loop #386: job 0:6840850958 is in state 'finished'
[2025-10-13 20:43:02] 2025-10-13 11:42:19,299 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 20:43:02] 2025-10-13 11:42:19,482 | INFO     | time since job start (5193s) is within the limit (172800.0s)
[2025-10-13 20:43:02] 2025-10-13 11:42:21,487 | INFO     | time since job start (5195s) is within the limit (172800.0s)
[2025-10-13 20:43:02] 2025-10-13 11:42:21,802 | INFO     | monitor loop #387: job 0:6840850958 is in state 'finished'
[2025-10-13 20:43:02] 2025-10-13 11:42:21,802 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 20:43:02] 2025-10-13 11:42:23,492 | INFO     | time since job start (5197s) is within the limit (172800.0s)
[2025-10-13 20:43:02] 2025-10-13 11:42:24,305 | INFO     | monitor loop #388: job 0:6840850958 is in state 'finished'
[2025-10-13 20:43:02] 2025-10-13 11:42:24,305 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 20:43:02] 2025-10-13 11:42:25,498 | INFO     | time since job start (5199s) is within the limit (172800.0s)
[2025-10-13 20:43:02] 2025-10-13 11:42:26,808 | INFO     | monitor loop #389: job 0:6840850958 is in state 'finished'
[2025-10-13 20:43:02] 2025-10-13 11:42:26,808 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 20:43:02] 2025-10-13 11:42:27,504 | INFO     | time since job start (5201s) is within the limit (172800.0s)
[2025-10-13 20:43:02] 2025-10-13 11:42:29,311 | INFO     | monitor loop #390: job 0:6840850958 is in state 'finished'
[2025-10-13 20:43:02] 2025-10-13 11:42:29,311 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 20:43:02] 2025-10-13 11:42:29,509 | INFO     | time since job start (5203s) is within the limit (172800.0s)
[2025-10-13 20:43:02] 2025-10-13 11:42:31,207 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 20:43:02] 2025-10-13 11:42:31,210 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3321.1224374999997
[2025-10-13 20:43:02] 2025-10-13 11:42:31,212 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6840850958/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 20:43:02] 2025-10-13 11:42:31,212 | INFO     | extracted standard info from prmon json
[2025-10-13 20:43:02] 2025-10-13 11:42:31,212 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 20:43:02] 2025-10-13 11:42:31,212 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 20:43:02] 2025-10-13 11:42:31,213 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 20:43:02] 2025-10-13 11:42:31,213 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 20:43:02] 2025-10-13 11:42:31,214 | INFO     | fitting pss+swap vs Time
[2025-10-13 20:43:02] 2025-10-13 11:42:31,214 | INFO     | sum of square deviations: 147126479.5
[2025-10-13 20:43:02] 2025-10-13 11:42:31,214 | INFO     | sum of deviations: -12236474096.000002
[2025-10-13 20:43:02] 2025-10-13 11:42:31,214 | INFO     | mean x: 1760353223.5
[2025-10-13 20:43:02] 2025-10-13 11:42:31,214 | INFO     | mean y: 2587777.794871795
[2025-10-13 20:43:02] 2025-10-13 11:42:31,214 | INFO     | -- intersect: 146410744163.86438
[2025-10-13 20:43:02] 2025-10-13 11:42:31,215 | INFO     | intersect: 146410744163.86438
[2025-10-13 20:43:02] 2025-10-13 11:42:31,215 | INFO     | chi2: 0.07441375399700839
[2025-10-13 20:43:02] 2025-10-13 11:42:31,215 | INFO     | -- intersect: 146410744163.86438
[2025-10-13 20:43:02] 2025-10-13 11:42:31,215 | INFO     | current memory leak: -83.17 B/s (using 78 data points, chi2=0.07)
[2025-10-13 20:43:02] 2025-10-13 11:42:31,215 | INFO     | could have reported an average CPU frequency of 3328 MHz (6 samples)
[2025-10-13 20:43:02] 2025-10-13 11:42:31,215 | INFO     | ..............................
[2025-10-13 20:43:02] 2025-10-13 11:42:31,215 | INFO     | . Timing measurements:
[2025-10-13 20:43:02] 2025-10-13 11:42:31,215 | INFO     | . get job = 0 s
[2025-10-13 20:43:02] 2025-10-13 11:42:31,215 | INFO     | . initial setup = 6 s
[2025-10-13 20:43:02] 2025-10-13 11:42:31,215 | INFO     | . payload setup = 5 s
[2025-10-13 20:43:02] 2025-10-13 11:42:31,215 | INFO     | . stage-in = 0 s
[2025-10-13 20:43:02] 2025-10-13 11:42:31,215 | INFO     | . payload execution = 5158 s
[2025-10-13 20:43:02] 2025-10-13 11:42:31,216 | INFO     | . stage-out = 0 s
[2025-10-13 20:43:02] 2025-10-13 11:42:31,216 | INFO     | . log creation = 0 s
[2025-10-13 20:43:02] 2025-10-13 11:42:31,216 | INFO     | ..............................
[2025-10-13 20:43:02] 2025-10-13 11:42:31,275 | INFO     | 
[2025-10-13 20:43:02] 2025-10-13 11:42:31,276 | INFO     | job summary report
[2025-10-13 20:43:02] 2025-10-13 11:42:31,276 | INFO     | --------------------------------------------------
[2025-10-13 20:43:02] 2025-10-13 11:42:31,276 | INFO     | PanDA job id: 6840850958
[2025-10-13 20:43:02] 2025-10-13 11:42:31,276 | INFO     | task id: 46676269
[2025-10-13 20:43:02] 2025-10-13 11:42:31,276 | INFO     | errors: (none)
[2025-10-13 20:43:02] 2025-10-13 11:42:31,276 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 20:43:02] 2025-10-13 11:42:31,276 | INFO     | pilot state: finished 
[2025-10-13 20:43:02] 2025-10-13 11:42:31,276 | INFO     | transexitcode: 0
[2025-10-13 20:43:02] 2025-10-13 11:42:31,276 | INFO     | exeerrorcode: 0
[2025-10-13 20:43:02] 2025-10-13 11:42:31,276 | INFO     | exeerrordiag: 
[2025-10-13 20:43:02] 2025-10-13 11:42:31,276 | INFO     | exitcode: 0
[2025-10-13 20:43:02] 2025-10-13 11:42:31,276 | INFO     | exitmsg: OK
[2025-10-13 20:43:02] 2025-10-13 11:42:31,276 | INFO     | cpuconsumptiontime: 28448 s
[2025-10-13 20:43:02] 2025-10-13 11:42:31,276 | INFO     | nevents: 400
[2025-10-13 20:43:02] 2025-10-13 11:42:31,276 | INFO     | neventsw: 0
[2025-10-13 20:43:02] 2025-10-13 11:42:31,276 | INFO     | pid: 4184081
[2025-10-13 20:43:02] 2025-10-13 11:42:31,276 | INFO     | pgrp: 4184081
[2025-10-13 20:43:02] 2025-10-13 11:42:31,276 | INFO     | corecount: 6
[2025-10-13 20:43:02] 2025-10-13 11:42:31,277 | INFO     | event service: False
[2025-10-13 20:43:02] 2025-10-13 11:42:31,277 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 5168: 2384536, 5171: 2384536, 5191: 2384730}
[2025-10-13 20:43:02] 2025-10-13 11:42:31,277 | INFO     | --------------------------------------------------
[2025-10-13 20:43:02] 2025-10-13 11:42:31,277 | INFO     | 
[2025-10-13 20:43:02] 2025-10-13 11:42:31,277 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-13 20:43:02] 2025-10-13 11:42:31,289 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 20:43:02] 2025-10-13 11:42:31,290 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 20:43:02] 2025-10-13 11:42:31,290 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 20:43:02] 2025-10-13 11:42:31,290 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 20:43:02] 2025-10-13 11:42:31,290 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 20:43:02] 2025-10-13 11:42:31,290 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 20:43:02] 2025-10-13 11:42:31,290 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 20:43:02] 2025-10-13 11:42:31,290 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 20:43:02] 2025-10-13 11:42:31,290 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 20:43:02] 2025-10-13 11:42:31,291 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 20:43:02] 2025-10-13 11:42:31,291 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 20:43:02] 2025-10-13 11:42:31,291 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 20:43:02] 2025-10-13 11:42:31,291 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 20:43:02] 2025-10-13 11:42:31,291 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 20:43:02] 2025-10-13 11:42:31,291 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 20:43:02] 2025-10-13 11:42:31,291 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 20:43:02] 2025-10-13 11:42:31,291 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 20:43:02] 2025-10-13 11:42:31,291 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 20:43:02] 2025-10-13 11:42:31,291 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 20:43:02] 2025-10-13 11:42:31,292 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 20:43:02] 2025-10-13 11:42:31,292 | INFO     | job 6840850958 has completed (purged errors)
[2025-10-13 20:43:02] 2025-10-13 11:42:31,292 | INFO     | overall cleanup function is called
[2025-10-13 20:43:02] 2025-10-13 11:42:32,298 | INFO     | --- collectZombieJob: --- 10, [4184081]
[2025-10-13 20:43:02] 2025-10-13 11:42:32,299 | INFO     | zombie collector waiting for pid 4184081
[2025-10-13 20:43:02] 2025-10-13 11:42:32,299 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 20:43:02] 2025-10-13 11:42:32,299 | INFO     | collected zombie processes
[2025-10-13 20:43:02] 2025-10-13 11:42:32,299 | INFO     | will attempt to kill all subprocesses of pid=4184081
[2025-10-13 20:43:02] 2025-10-13 11:42:32,377 | INFO     | process IDs to be killed: [4184081] (in reverse order)
[2025-10-13 20:43:02] 2025-10-13 11:42:32,412 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 20:43:02] 2025-10-13 11:42:32,412 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 20:43:02] 2025-10-13 11:42:32,416 | INFO     | did not find any defunct processes belonging to 4184081
[2025-10-13 20:43:02] 2025-10-13 11:42:32,419 | INFO     | did not find any defunct processes belonging to 4184081
[2025-10-13 20:43:02] 2025-10-13 11:42:32,419 | INFO     | ready for new job
[2025-10-13 20:43:02] 2025-10-13 11:42:32,419 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 20:43:02] 2025-10-13 11:42:32,421 | INFO     | ***************************************
[2025-10-13 20:43:02] 2025-10-13 11:42:32,421 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 20:43:02] 2025-10-13 11:42:32,421 | INFO     | ***************************************
[2025-10-13 20:43:02] 2025-10-13 11:42:32,421 | INFO     | 
[2025-10-13 20:43:02] 2025-10-13 11:42:32,422 | INFO     | architecture information:
[2025-10-13 20:43:02] 2025-10-13 11:42:32,422 | INFO     | executing command: cat /etc/os-release
[2025-10-13 20:43:02] 2025-10-13 11:42:32,433 | INFO     | cat /etc/os-release:
[2025-10-13 20:43:02] NAME="CentOS Linux"
[2025-10-13 20:43:02] VERSION="7 (Core)"
[2025-10-13 20:43:02] ID="centos"
[2025-10-13 20:43:02] ID_LIKE="rhel fedora"
[2025-10-13 20:43:02] VERSION_ID="7"
[2025-10-13 20:43:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 20:43:02] ANSI_COLOR="0;31"
[2025-10-13 20:43:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 20:43:02] HOME_URL="https://www.centos.org/"
[2025-10-13 20:43:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 20:43:02] 
[2025-10-13 20:43:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 20:43:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 20:43:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 20:43:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 20:43:02] 
[2025-10-13 20:43:02] 2025-10-13 11:42:32,434 | INFO     | ***************************************
[2025-10-13 20:43:02] 2025-10-13 11:42:32,936 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-13 20:43:02] 2025-10-13 11:42:32,949 | INFO     | sufficient remaining disk space (96778321920 B)
[2025-10-13 20:43:02] 2025-10-13 11:42:32,949 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 20:43:02] 2025-10-13 11:42:32,949 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 20:43:02] 2025-10-13 11:42:32,949 | INFO     | update_server=False
[2025-10-13 20:43:02] 2025-10-13 11:42:32,949 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 20:43:02] 2025-10-13 11:42:32,949 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 20:43:02] 2025-10-13 11:42:32,950 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 20:43:02] 2025-10-13 11:42:32,950 | INFO     | aborting loop
[2025-10-13 20:43:02] 2025-10-13 11:42:33,115 | INFO     | all payload control threads have been joined
[2025-10-13 20:43:02] 2025-10-13 11:42:33,322 | INFO     | all data control threads have been joined
[2025-10-13 20:43:02] 2025-10-13 11:42:33,955 | INFO     | [job] retrieve thread has finished
[2025-10-13 20:43:02] 2025-10-13 11:42:33,955 | INFO     | [job] queue monitor thread has finished
[2025-10-13 20:43:02] 2025-10-13 11:42:33,955 | INFO     | [job] job monitor thread has finished
[2025-10-13 20:43:02] 2025-10-13 11:42:33,969 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 20:43:02] 2025-10-13 11:42:34,116 | INFO     | [payload] control thread has finished
[2025-10-13 20:43:02] 2025-10-13 11:42:34,192 | INFO     | all job control threads have been joined
[2025-10-13 20:43:02] 2025-10-13 11:42:34,206 | INFO     | [data] copytool_in thread has finished
[2025-10-13 20:43:02] 2025-10-13 11:42:34,327 | INFO     | [data] control thread has finished
[2025-10-13 20:43:02] 2025-10-13 11:42:34,369 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 20:43:02] 2025-10-13 11:42:34,543 | INFO     | [payload] validate_post thread has finished
[2025-10-13 20:43:02] 2025-10-13 11:42:34,813 | INFO     | [payload] failed_post thread has finished
[2025-10-13 20:43:02] 2025-10-13 11:42:34,954 | INFO     | [job] validate thread has finished
[2025-10-13 20:43:02] 2025-10-13 11:42:35,073 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 20:43:02] 2025-10-13 11:42:35,140 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 20:43:02] 2025-10-13 11:42:35,197 | INFO     | [job] control thread has finished
[2025-10-13 20:43:02] 2025-10-13 11:42:35,217 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 20:43:02] 2025-10-13 11:42:35,975 | INFO     | [data] copytool_out thread has finished
[2025-10-13 20:43:02] 2025-10-13 11:42:39,145 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 20:43:02] 2025-10-13 11:42:43,808 | INFO     | job.realtimelogging is not enabled
[2025-10-13 20:43:02] 2025-10-13 11:42:44,814 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 20:43:02] 2025-10-13 11:42:53,416 | INFO     | [monitor] cgroup control has ended
[2025-10-13 20:43:02] 2025-10-13 11:42:54,780 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139867170486080)>', '<ExcThread(monitor, started 139866524337920)>']
[2025-10-13 20:43:02] 2025-10-13 11:42:59,805 | INFO     | all workflow threads have been joined
[2025-10-13 20:43:02] 2025-10-13 11:42:59,805 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 20:43:02] 2025-10-13 11:42:59,805 | INFO     | traces error code: 0
[2025-10-13 20:43:02] 2025-10-13 11:42:59,805 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 20:43:02] 2025-10-13 11:43:01,581 | INFO     | 5211s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-13 20:43:02] 2025-10-13 11:43:02,681 | INFO     | PID=4177310 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 20:43:02] 2025-10-13 11:43:02,682 | INFO     | .. there are 2 such processes running
[2025-10-13 20:43:02] 2025-10-13 11:43:02,682 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 20:43:02] 2025-10-13 11:43:02,682 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 20:43:02] 2025-10-13 11:43:02,682 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 20:43:02] 2025-10-13 11:43:02,682 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 20:43:02] 2025-10-13 11:43:02,682 | INFO     | [monitor] control thread has ended
[2025-10-13 20:43:02] 2025-10-13 11:43:02,756 [wrapper] ==== pilot stdout END ====
[2025-10-13 20:43:02] 2025-10-13 11:43:02,758 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 20:43:02] 2025-10-13 11:43:02,760 [wrapper] pilotpid: 4177310
[2025-10-13 20:43:02] 2025-10-13 11:43:02,762 [wrapper] Pilot exit status: 0
[2025-10-13 20:43:02] 2025-10-13 11:43:02,770 [wrapper] pandaids: 6840850958
[2025-10-13 20:43:02] 2025-10-13 11:43:02,800 [wrapper] cleanup supervisor_pilot   24856 4177311
[2025-10-13 20:43:02] 2025-10-13 11:43:02,802 [wrapper] Test setup, not cleaning
[2025-10-13 20:43:02] 2025-10-13 11:43:02,804 [wrapper] apfmon messages muted
[2025-10-13 20:43:02] 2025-10-13 11:43:02,805 [wrapper] ==== wrapper stdout END ====
[2025-10-13 20:43:02] 2025-10-13 11:43:02,807 [wrapper] ==== wrapper stderr END ====
[2025-10-13 20:43:02]  *** Error codes and diagnostics ***
[2025-10-13 20:43:02]     "exeErrorCode": 0,
[2025-10-13 20:43:02]     "exeErrorDiag": "",
[2025-10-13 20:43:02]     "pilotErrorCode": 0,
[2025-10-13 20:43:02]     "pilotErrorDiag": "",
[2025-10-13 20:43:02]  *** Listing of results directory ***
[2025-10-13 20:43:02] total 407352
[2025-10-13 20:43:02] -rw-r--r--. 1 boinc boinc    557409 Oct 13 06:57 pilot3.tar.gz
[2025-10-13 20:43:02] -rw-r--r--. 1 boinc boinc      5112 Oct 13 07:18 queuedata.json
[2025-10-13 20:43:02] -rwx------. 1 boinc boinc     36292 Oct 13 07:19 runpilot2-wrapper.sh
[2025-10-13 20:43:02] -rw-r--r--. 1 boinc boinc       100 Oct 13 19:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 20:43:02] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 19:15 run_atlas
[2025-10-13 20:43:02] -rw-r--r--. 1 boinc boinc       105 Oct 13 19:15 job.xml
[2025-10-13 20:43:02] -rw-r--r--. 2 boinc boinc     15120 Oct 13 19:15 start_atlas.sh
[2025-10-13 20:43:02] drwxrwx--x. 2 boinc boinc        68 Oct 13 19:15 shared
[2025-10-13 20:43:02] -rw-r--r--. 2 boinc boinc    569678 Oct 13 19:15 input.tar.gz
[2025-10-13 20:43:02] -rw-r--r--. 1 boinc boinc      9362 Oct 13 19:15 init_data.xml
[2025-10-13 20:43:02] -rw-r--r--. 2 boinc boinc 220008501 Oct 13 19:15 EVNT.46676267._004608.pool.root.1
[2025-10-13 20:43:02] -rw-r--r--. 1 boinc boinc         0 Oct 13 19:15 boinc_lockfile
[2025-10-13 20:43:02] -rw-r--r--. 1 boinc boinc      2550 Oct 13 19:15 pandaJob.out
[2025-10-13 20:43:02] -rw-------. 1 boinc boinc    972497 Oct 13 19:15 agis_schedconf.cvmfs.json
[2025-10-13 20:43:02] -rw-------. 1 boinc boinc   1560580 Oct 13 19:15 agis_ddmendpoints.agis.ALL.json
[2025-10-13 20:43:02] drwx------. 5 boinc boinc      4096 Oct 13 19:15 pilot3
[2025-10-13 20:43:02] -rw-------. 1 boinc boinc 191119755 Oct 13 20:41 HITS.46676269._090906.pool.root.1
[2025-10-13 20:43:02] -rw-r--r--. 1 boinc boinc       529 Oct 13 20:41 boinc_task_state.xml
[2025-10-13 20:43:02] -rw-------. 1 boinc boinc      1015 Oct 13 20:42 memory_monitor_summary.json
[2025-10-13 20:43:02] -rw-------. 1 boinc boinc    291141 Oct 13 20:42 log.46676269._090906.job.log.tgz.1
[2025-10-13 20:43:02] -rw-------. 1 boinc boinc        95 Oct 13 20:42 pilot_heartbeat.json
[2025-10-13 20:43:02] -rw-------. 1 boinc boinc      7750 Oct 13 20:42 heartbeat.json
[2025-10-13 20:43:02] -rw-r--r--. 1 boinc boinc      8192 Oct 13 20:42 boinc_mmap_file
[2025-10-13 20:43:02] -rw-r--r--. 1 boinc boinc        27 Oct 13 20:42 wrapper_checkpoint.txt
[2025-10-13 20:43:02] -rw-------. 1 boinc boinc       937 Oct 13 20:43 pilotlog.txt
[2025-10-13 20:43:02] -rw-------. 1 boinc boinc    760251 Oct 13 20:43 log.46676269._090906.job.log.1
[2025-10-13 20:43:02] -rw-------. 1 boinc boinc       357 Oct 13 20:43 output.list
[2025-10-13 20:43:02] -rw-r--r--. 1 boinc boinc       620 Oct 13 20:43 runtime_log
[2025-10-13 20:43:02] -rw-------. 1 boinc boinc   1075200 Oct 13 20:43 result.tar.gz
[2025-10-13 20:43:02] -rw-r--r--. 1 boinc boinc      8661 Oct 13 20:43 runtime_log.err
[2025-10-13 20:43:02] -rw-------. 1 boinc boinc       641 Oct 13 20:43 ffjNDmYaJS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMqlNDmhWUqPn.diag
[2025-10-13 20:43:02] -rw-r--r--. 1 boinc boinc     21951 Oct 13 20:43 stderr.txt
[2025-10-13 20:43:02] HITS file was successfully produced:
[2025-10-13 20:43:02] -rw-------. 1 boinc boinc 191119755 Oct 13 20:41 shared/HITS.pool.root.1
[2025-10-13 20:43:02]  *** Contents of shared directory: ***
[2025-10-13 20:43:02] total 403128
[2025-10-13 20:43:02] -rw-r--r--. 2 boinc boinc     15120 Oct 13 19:15 start_atlas.sh
[2025-10-13 20:43:02] -rw-r--r--. 2 boinc boinc    569678 Oct 13 19:15 input.tar.gz
[2025-10-13 20:43:02] -rw-r--r--. 2 boinc boinc 220008501 Oct 13 19:15 ATLAS.root_0
[2025-10-13 20:43:02] -rw-------. 1 boinc boinc 191119755 Oct 13 20:41 HITS.pool.root.1
[2025-10-13 20:43:02] -rw-------. 1 boinc boinc   1075200 Oct 13 20:43 result.tar.gz
20:43:04 (4173516): run_atlas exited; CPU time 28503.946781
20:43:04 (4173516): called boinc_finish(0)

</stderr_txt>
]]>

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