Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:13:14 (10968): wrapper (7.7.26015): starting
13:13:14 (10968): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 13:13:14] Arguments: --nthreads 8
[2025-10-13 13:13:14] Threads: 8
[2025-10-13 13:13:14] Checking for CVMFS
[2025-10-13 13:13:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 13:13:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 13:13:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 13:13:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 13:13:17] 2.11.2.0 31978 221885 143032 151659 2 60 23644404 25165825 4632 130560 0 114591238 99.885 61829838 3174 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-13 13:13:17] CVMFS is ok
[2025-10-13 13:13:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 13:13:17] Checking for apptainer binary...
[2025-10-13 13:13:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 13:13:17] Running /usr/bin/apptainer --version
[2025-10-13 13:13:17] apptainer version 1.3.2-1.el7
[2025-10-13 13:13:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 13:13:23] cg-vwn266.simple-grid.lan
[2025-10-13 13:13:23] apptainer works
[2025-10-13 13:13:23] Set ATHENA_PROC_NUMBER=8
[2025-10-13 13:13:23] Set ATHENA_CORE_NUMBER=8
[2025-10-13 13:13:23] Starting ATLAS job with PandaID=6840850819
[2025-10-13 13:13:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 17:22:52]  *** The last 200 lines of the pilot log: ***
[2025-10-13 17:22:52] 2025-10-13 15:21:56,120 | INFO     | monitor loop #1070: job 0:6840850819 is in state 'finished'
[2025-10-13 17:22:52] 2025-10-13 15:21:56,120 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 17:22:52] 2025-10-13 15:21:57,175 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 17:22:52] 2025-10-13 15:21:57,177 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-10-13 17:22:52] 2025-10-13 15:21:57,179 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6840850819/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 17:22:52] 2025-10-13 15:21:57,179 | INFO     | extracted standard info from prmon json
[2025-10-13 17:22:52] 2025-10-13 15:21:57,180 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 17:22:52] 2025-10-13 15:21:57,180 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 17:22:52] 2025-10-13 15:21:57,180 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 17:22:52] 2025-10-13 15:21:57,180 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 17:22:52] 2025-10-13 15:21:57,185 | INFO     | fitting pss+swap vs Time
[2025-10-13 17:22:52] 2025-10-13 15:21:57,185 | INFO     | sum of square deviations: 3871990738.0
[2025-10-13 17:22:52] 2025-10-13 15:21:57,188 | INFO     | sum of deviations: 20577425209.5
[2025-10-13 17:22:52] 2025-10-13 15:21:57,188 | INFO     | mean x: 1760361750.5
[2025-10-13 17:22:52] 2025-10-13 15:21:57,188 | INFO     | mean y: 2478643.9612068967
[2025-10-13 17:22:52] 2025-10-13 15:21:57,188 | INFO     | -- intersect: -9352841322.865185
[2025-10-13 17:22:52] 2025-10-13 15:21:57,188 | INFO     | intersect: -9352841322.865185
[2025-10-13 17:22:52] 2025-10-13 15:21:57,188 | INFO     | chi2: 5.4564281758123
[2025-10-13 17:22:52] 2025-10-13 15:21:57,189 | INFO     | sum of square deviations: 3627000098.0
[2025-10-13 17:22:52] 2025-10-13 15:21:57,191 | INFO     | sum of deviations: 35400079308.999985
[2025-10-13 17:22:52] 2025-10-13 15:21:57,191 | INFO     | mean x: 1760361598.0
[2025-10-13 17:22:52] 2025-10-13 15:21:57,191 | INFO     | mean y: 2487703.6475770925
[2025-10-13 17:22:52] 2025-10-13 15:21:57,191 | INFO     | -- intersect: -17178912488.78163
[2025-10-13 17:22:52] 2025-10-13 15:21:57,191 | INFO     | intersect: -17178912488.78163
[2025-10-13 17:22:52] 2025-10-13 15:21:57,192 | INFO     | chi2: 4.7327970795283125
[2025-10-13 17:22:52] 2025-10-13 15:21:57,192 | INFO     | current chi2=4.7327970795283125 (change=13.261992515392363 %)
[2025-10-13 17:22:52] 2025-10-13 15:21:57,192 | INFO     | right removable region: 226
[2025-10-13 17:22:52] 2025-10-13 15:21:57,192 | INFO     | sum of square deviations: 3627000098.0
[2025-10-13 17:22:52] 2025-10-13 15:21:57,194 | INFO     | sum of deviations: -57014428786.999985
[2025-10-13 17:22:52] 2025-10-13 15:21:57,194 | INFO     | mean x: 1760361903.0
[2025-10-13 17:22:52] 2025-10-13 15:21:57,195 | INFO     | mean y: 2526865.3612334803
[2025-10-13 17:22:52] 2025-10-13 15:21:57,195 | INFO     | -- intersect: 27674439092.020695
[2025-10-13 17:22:52] 2025-10-13 15:21:57,195 | INFO     | intersect: 27674439092.020695
[2025-10-13 17:22:52] 2025-10-13 15:21:57,195 | INFO     | chi2: 1.1341674666461654
[2025-10-13 17:22:52] 2025-10-13 15:21:57,195 | INFO     | current chi2=1.1341674666461654 (change=79.21410435358068 %)
[2025-10-13 17:22:52] 2025-10-13 15:21:57,196 | INFO     | sum of square deviations: 3392567795.5
[2025-10-13 17:22:52] 2025-10-13 15:21:57,197 | INFO     | sum of deviations: -66551974535.99999
[2025-10-13 17:22:52] 2025-10-13 15:21:57,197 | INFO     | mean x: 1760362055.5
[2025-10-13 17:22:52] 2025-10-13 15:21:57,198 | INFO     | mean y: 2533023.243243243
[2025-10-13 17:22:52] 2025-10-13 15:21:57,198 | INFO     | -- intersect: 34535540984.69802
[2025-10-13 17:22:52] 2025-10-13 15:21:57,198 | INFO     | intersect: 34535540984.69802
[2025-10-13 17:22:52] 2025-10-13 15:21:57,198 | INFO     | chi2: 1.0066590403203988
[2025-10-13 17:22:52] 2025-10-13 15:21:57,198 | INFO     | current chi2=1.0066590403203988 (change=11.242469042320572 %)
[2025-10-13 17:22:52] 2025-10-13 15:21:57,198 | INFO     | left removable region: 20
[2025-10-13 17:22:52] 2025-10-13 15:21:57,199 | INFO     | sum of square deviations: 2710627567.5
[2025-10-13 17:22:52] 2025-10-13 15:21:57,200 | INFO     | sum of deviations: -40652383902.99999
[2025-10-13 17:22:52] 2025-10-13 15:21:57,200 | INFO     | mean x: 1760362177.5
[2025-10-13 17:22:52] 2025-10-13 15:21:57,200 | INFO     | mean y: 2536722.2621359224
[2025-10-13 17:22:52] 2025-10-13 15:21:57,201 | INFO     | -- intersect: 26403404147.23752
[2025-10-13 17:22:52] 2025-10-13 15:21:57,201 | INFO     | intersect: 26403404147.23752
[2025-10-13 17:22:52] 2025-10-13 15:21:57,201 | INFO     | chi2: 0.20031037278182465
[2025-10-13 17:22:52] 2025-10-13 15:21:57,201 | INFO     | -- intersect: 26403404147.23752
[2025-10-13 17:22:52] 2025-10-13 15:21:57,201 | INFO     | current memory leak: -15.00 B/s (using 206 data points, chi2=0.20)
[2025-10-13 17:22:52] 2025-10-13 15:21:57,202 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-13 17:22:52] 2025-10-13 15:21:57,202 | INFO     | ..............................
[2025-10-13 17:22:52] 2025-10-13 15:21:57,202 | INFO     | . Timing measurements:
[2025-10-13 17:22:52] 2025-10-13 15:21:57,202 | INFO     | . get job = 0 s
[2025-10-13 17:22:52] 2025-10-13 15:21:57,202 | INFO     | . initial setup = 8 s
[2025-10-13 17:22:52] 2025-10-13 15:21:57,202 | INFO     | . payload setup = 130 s
[2025-10-13 17:22:52] 2025-10-13 15:21:57,203 | INFO     | . stage-in = 0 s
[2025-10-13 17:22:52] 2025-10-13 15:21:57,203 | INFO     | . payload execution = 14260 s
[2025-10-13 17:22:52] 2025-10-13 15:21:57,203 | INFO     | . stage-out = 4 s
[2025-10-13 17:22:52] 2025-10-13 15:21:57,203 | INFO     | . log creation = 1 s
[2025-10-13 17:22:52] 2025-10-13 15:21:57,203 | INFO     | ..............................
[2025-10-13 17:22:52] 2025-10-13 15:21:57,315 | INFO     | 
[2025-10-13 17:22:52] 2025-10-13 15:21:57,316 | INFO     | job summary report
[2025-10-13 17:22:52] 2025-10-13 15:21:57,316 | INFO     | --------------------------------------------------
[2025-10-13 17:22:52] 2025-10-13 15:21:57,316 | INFO     | PanDA job id: 6840850819
[2025-10-13 17:22:52] 2025-10-13 15:21:57,316 | INFO     | task id: 46676269
[2025-10-13 17:22:52] 2025-10-13 15:21:57,316 | INFO     | errors: (none)
[2025-10-13 17:22:52] 2025-10-13 15:21:57,316 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 17:22:52] 2025-10-13 15:21:57,316 | INFO     | pilot state: finished 
[2025-10-13 17:22:52] 2025-10-13 15:21:57,316 | INFO     | transexitcode: 0
[2025-10-13 17:22:52] 2025-10-13 15:21:57,316 | INFO     | exeerrorcode: 0
[2025-10-13 17:22:52] 2025-10-13 15:21:57,316 | INFO     | exeerrordiag: 
[2025-10-13 17:22:52] 2025-10-13 15:21:57,316 | INFO     | exitcode: 0
[2025-10-13 17:22:52] 2025-10-13 15:21:57,316 | INFO     | exitmsg: OK
[2025-10-13 17:22:52] 2025-10-13 15:21:57,317 | INFO     | cpuconsumptiontime: 52493 s
[2025-10-13 17:22:52] 2025-10-13 15:21:57,317 | INFO     | nevents: 400
[2025-10-13 17:22:52] 2025-10-13 15:21:57,317 | INFO     | neventsw: 0
[2025-10-13 17:22:52] 2025-10-13 15:21:57,317 | INFO     | pid: 21306
[2025-10-13 17:22:52] 2025-10-13 15:21:57,317 | INFO     | pgrp: 21306
[2025-10-13 17:22:52] 2025-10-13 15:21:57,317 | INFO     | corecount: 8
[2025-10-13 17:22:52] 2025-10-13 15:21:57,317 | INFO     | event service: False
[2025-10-13 17:22:52] 2025-10-13 15:21:57,317 | INFO     | sizes: {0: 2348029, 1: 2348885, 2: 2348913, 12: 2348913, 23: 2348941, 34: 2348969, 45: 2349125, 55: 2349153, 66: 2349181, 77: 2349209, 88: 2349265, 96: 2349835, 98
[2025-10-13 17:22:52] 2025-10-13 15:21:57,317 | INFO     | --------------------------------------------------
[2025-10-13 17:22:52] 2025-10-13 15:21:57,317 | INFO     | 
[2025-10-13 17:22:52] 2025-10-13 15:21:57,317 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-10-13 17:22:52] 2025-10-13 15:21:57,641 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 17:22:52] 2025-10-13 15:21:57,641 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 17:22:52] 2025-10-13 15:21:57,641 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 17:22:52] 2025-10-13 15:21:57,641 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 17:22:52] 2025-10-13 15:21:57,641 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 17:22:52] 2025-10-13 15:21:57,642 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 17:22:52] 2025-10-13 15:21:57,642 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 17:22:52] 2025-10-13 15:21:57,642 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 17:22:52] 2025-10-13 15:21:57,642 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 17:22:52] 2025-10-13 15:21:57,642 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 17:22:52] 2025-10-13 15:21:57,642 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 17:22:52] 2025-10-13 15:21:57,642 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 17:22:52] 2025-10-13 15:21:57,642 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 17:22:52] 2025-10-13 15:21:57,642 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 17:22:52] 2025-10-13 15:21:57,642 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 17:22:52] 2025-10-13 15:21:57,642 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 17:22:52] 2025-10-13 15:21:57,643 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 17:22:52] 2025-10-13 15:21:57,643 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 17:22:52] 2025-10-13 15:21:57,643 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 17:22:52] 2025-10-13 15:21:57,643 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 17:22:52] 2025-10-13 15:21:57,643 | INFO     | job 6840850819 has completed (purged errors)
[2025-10-13 17:22:52] 2025-10-13 15:21:57,643 | INFO     | overall cleanup function is called
[2025-10-13 17:22:52] 2025-10-13 15:21:58,652 | INFO     | --- collectZombieJob: --- 10, [21306]
[2025-10-13 17:22:52] 2025-10-13 15:21:58,652 | INFO     | zombie collector waiting for pid 21306
[2025-10-13 17:22:52] 2025-10-13 15:21:58,652 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 17:22:52] 2025-10-13 15:21:58,652 | INFO     | collected zombie processes
[2025-10-13 17:22:52] 2025-10-13 15:21:58,653 | INFO     | will attempt to kill all subprocesses of pid=21306
[2025-10-13 17:22:52] 2025-10-13 15:21:58,761 | INFO     | process IDs to be killed: [21306] (in reverse order)
[2025-10-13 17:22:52] 2025-10-13 15:21:59,502 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 17:22:52] 2025-10-13 15:21:59,502 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 17:22:52] 2025-10-13 15:21:59,505 | INFO     | did not find any defunct processes belonging to 21306
[2025-10-13 17:22:52] 2025-10-13 15:21:59,509 | INFO     | did not find any defunct processes belonging to 21306
[2025-10-13 17:22:52] 2025-10-13 15:21:59,509 | INFO     | ready for new job
[2025-10-13 17:22:52] 2025-10-13 15:21:59,509 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 17:22:52] 2025-10-13 15:21:59,511 | INFO     | ***************************************
[2025-10-13 17:22:52] 2025-10-13 15:21:59,511 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 17:22:52] 2025-10-13 15:21:59,511 | INFO     | ***************************************
[2025-10-13 17:22:52] 2025-10-13 15:21:59,512 | INFO     | 
[2025-10-13 17:22:52] 2025-10-13 15:21:59,512 | INFO     | pilot is running in a VM
[2025-10-13 17:22:52] 2025-10-13 15:21:59,512 | INFO     | architecture information:
[2025-10-13 17:22:52] 2025-10-13 15:21:59,516 | INFO     | executing command: cat /etc/os-release
[2025-10-13 17:22:52] 2025-10-13 15:21:59,662 | INFO     | cat /etc/os-release:
[2025-10-13 17:22:52] NAME="CentOS Linux"
[2025-10-13 17:22:52] VERSION="7 (Core)"
[2025-10-13 17:22:52] ID="centos"
[2025-10-13 17:22:52] ID_LIKE="rhel fedora"
[2025-10-13 17:22:52] VERSION_ID="7"
[2025-10-13 17:22:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 17:22:52] ANSI_COLOR="0;31"
[2025-10-13 17:22:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 17:22:52] HOME_URL="https://www.centos.org/"
[2025-10-13 17:22:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 17:22:52] 
[2025-10-13 17:22:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 17:22:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 17:22:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 17:22:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 17:22:52] 
[2025-10-13 17:22:52] 2025-10-13 15:21:59,663 | INFO     | ***************************************
[2025-10-13 17:22:52] 2025-10-13 15:22:00,166 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-10-13 17:22:52] 2025-10-13 15:22:00,374 | INFO     | sufficient remaining disk space (496357081088 B)
[2025-10-13 17:22:52] 2025-10-13 15:22:00,374 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 17:22:52] 2025-10-13 15:22:00,374 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 17:22:52] 2025-10-13 15:22:00,374 | INFO     | update_server=False
[2025-10-13 17:22:52] 2025-10-13 15:22:00,374 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 17:22:52] 2025-10-13 15:22:00,375 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 17:22:52] 2025-10-13 15:22:00,375 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 17:22:52] 2025-10-13 15:22:00,380 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:22:52] 2025-10-13 15:22:00,380 | INFO     | aborting loop
[2025-10-13 17:22:52] 2025-10-13 15:22:00,610 | INFO     | all payload control threads have been joined
[2025-10-13 17:22:52] 2025-10-13 15:22:00,802 | INFO     | all data control threads have been joined
[2025-10-13 17:22:52] 2025-10-13 15:22:01,377 | INFO     | all job control threads have been joined
[2025-10-13 17:22:52] 2025-10-13 15:22:01,380 | INFO     | [job] retrieve thread has finished
[2025-10-13 17:22:52] 2025-10-13 15:22:01,386 | INFO     | [job] job monitor thread has finished
[2025-10-13 17:22:52] 2025-10-13 15:22:01,616 | INFO     | [payload] control thread has finished
[2025-10-13 17:22:52] 2025-10-13 15:22:01,660 | INFO     | [payload] validate_post thread has finished
[2025-10-13 17:22:52] 2025-10-13 15:22:01,731 | INFO     | [payload] failed_post thread has finished
[2025-10-13 17:22:52] 2025-10-13 15:22:01,808 | INFO     | [data] control thread has finished
[2025-10-13 17:22:52] 2025-10-13 15:22:02,120 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 17:22:52] 2025-10-13 15:22:02,334 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:22:52] 2025-10-13 15:22:02,383 | INFO     | [job] control thread has finished
[2025-10-13 17:22:52] 2025-10-13 15:22:02,385 | INFO     | [data] copytool_out thread has finished
[2025-10-13 17:22:52] 2025-10-13 15:22:02,426 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 17:22:52] 2025-10-13 15:22:02,612 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 17:22:52] 2025-10-13 15:22:02,730 | INFO     | [job] validate thread has finished
[2025-10-13 17:22:52] 2025-10-13 15:22:02,764 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 17:22:52] 2025-10-13 15:22:02,879 | INFO     | [data] copytool_in thread has finished
[2025-10-13 17:22:52] 2025-10-13 15:22:03,340 | INFO     | [job] queue monitor thread has finished
[2025-10-13 17:22:52] 2025-10-13 15:22:04,384 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 17:22:52] 2025-10-13 15:22:29,177 | INFO     | PID=14781 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 17:22:52] 2025-10-13 15:22:29,177 | INFO     | .. there are 9 such processes running
[2025-10-13 17:22:52] 2025-10-13 15:22:29,178 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 17:22:52] 2025-10-13 15:22:29,178 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 17:22:52] 2025-10-13 15:22:29,178 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 17:22:52] 2025-10-13 15:22:40,575 | INFO     | [monitor] cgroup control has ended
[2025-10-13 17:22:52] 2025-10-13 15:22:42,495 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140108786554688)>', '<ExcThread(monitor, started 140108049139456)>']
[2025-10-13 17:22:52] 2025-10-13 15:22:43,261 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 17:22:52] 2025-10-13 15:22:43,261 | INFO     | [monitor] control thread has ended
[2025-10-13 17:22:52] 2025-10-13 15:22:47,521 | INFO     | all workflow threads have been joined
[2025-10-13 17:22:52] 2025-10-13 15:22:47,521 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 17:22:52] 2025-10-13 15:22:47,521 | INFO     | traces error code: 0
[2025-10-13 17:22:52] 2025-10-13 15:22:47,522 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 17:22:52] 2025-10-13 15:22:47,947 [wrapper] ==== pilot stdout END ====
[2025-10-13 17:22:52] 2025-10-13 15:22:48,051 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 17:22:52] 2025-10-13 15:22:48,164 [wrapper] pilotpid: 14781
[2025-10-13 17:22:52] 2025-10-13 15:22:48,254 [wrapper] Pilot exit status: 0
[2025-10-13 17:22:52] 2025-10-13 15:22:48,702 [wrapper] pandaids: 6840850819
[2025-10-13 17:22:52] 2025-10-13 15:22:49,517 [wrapper] cleanup supervisor_pilot 28700 14782
[2025-10-13 17:22:52] 2025-10-13 15:22:49,596 [wrapper] Test setup, not cleaning
[2025-10-13 17:22:52] 2025-10-13 15:22:49,675 [wrapper] apfmon messages muted
[2025-10-13 17:22:52] 2025-10-13 15:22:49,768 [wrapper] ==== wrapper stdout END ====
[2025-10-13 17:22:52] 2025-10-13 15:22:49,823 [wrapper] ==== wrapper stderr END ====
[2025-10-13 17:22:52]  *** Error codes and diagnostics ***
[2025-10-13 17:22:52]     "exeErrorCode": 0,
[2025-10-13 17:22:52]     "exeErrorDiag": "",
[2025-10-13 17:22:52]     "pilotErrorCode": 0,
[2025-10-13 17:22:52]     "pilotErrorDiag": "",
[2025-10-13 17:22:52]  *** Listing of results directory ***
[2025-10-13 17:22:52] total 409820
[2025-10-13 17:22:52] -rw-r--r--. 1 boinc boinc    557409 Oct 12 23:57 pilot3.tar.gz
[2025-10-13 17:22:52] -rw-r--r--. 1 boinc boinc      5112 Oct 13 00:12 queuedata.json
[2025-10-13 17:22:52] -rwx------. 1 boinc boinc     36292 Oct 13 00:12 runpilot2-wrapper.sh
[2025-10-13 17:22:52] -rw-r--r--. 1 boinc boinc       100 Oct 13 13:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 17:22:52] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 13:13 run_atlas
[2025-10-13 17:22:52] -rw-r--r--. 1 boinc boinc       105 Oct 13 13:13 job.xml
[2025-10-13 17:22:52] -rw-r--r--. 1 boinc boinc      6390 Oct 13 13:13 init_data.xml
[2025-10-13 17:22:52] -rw-r--r--. 2 boinc boinc 220622902 Oct 13 13:13 EVNT.46676267._004298.pool.root.1
[2025-10-13 17:22:52] -rw-r--r--. 2 boinc boinc     15120 Oct 13 13:13 start_atlas.sh
[2025-10-13 17:22:52] drwxrwx--x. 2 boinc boinc        68 Oct 13 13:13 shared
[2025-10-13 17:22:52] -rw-r--r--. 2 boinc boinc    569679 Oct 13 13:13 input.tar.gz
[2025-10-13 17:22:52] -rw-r--r--. 1 boinc boinc         0 Oct 13 13:13 boinc_lockfile
[2025-10-13 17:22:52] -rw-r--r--. 1 boinc boinc      2550 Oct 13 13:13 pandaJob.out
[2025-10-13 17:22:52] -rw-------. 1 boinc boinc    972497 Oct 13 13:17 agis_schedconf.cvmfs.json
[2025-10-13 17:22:52] drwx------. 5 boinc boinc      4096 Oct 13 13:17 pilot3
[2025-10-13 17:22:52] -rw-------. 1 boinc boinc 190283873 Oct 13 17:19 HITS.46676269._090767.pool.root.1
[2025-10-13 17:22:52] -rw-r--r--. 1 boinc boinc       531 Oct 13 17:19 boinc_task_state.xml
[2025-10-13 17:22:52] -rw-------. 1 boinc boinc      1019 Oct 13 17:20 memory_monitor_summary.json
[2025-10-13 17:22:52] -rw-------. 1 boinc boinc   1560580 Oct 13 17:20 agis_ddmendpoints.agis.ALL.json
[2025-10-13 17:22:52] -rw-------. 1 boinc boinc    462967 Oct 13 17:20 log.46676269._090767.job.log.tgz.1
[2025-10-13 17:22:52] -rw-------. 1 boinc boinc        95 Oct 13 17:21 pilot_heartbeat.json
[2025-10-13 17:22:52] -rw-------. 1 boinc boinc      7783 Oct 13 17:21 heartbeat.json
[2025-10-13 17:22:52] -rw-r--r--. 1 boinc boinc      8192 Oct 13 17:22 boinc_mmap_file
[2025-10-13 17:22:52] -rw-r--r--. 1 boinc boinc        28 Oct 13 17:22 wrapper_checkpoint.txt
[2025-10-13 17:22:52] -rw-------. 1 boinc boinc      4884 Oct 13 17:22 pilotlog.txt
[2025-10-13 17:22:52] -rw-------. 1 boinc boinc   1963884 Oct 13 17:22 log.46676269._090767.job.log.1
[2025-10-13 17:22:52] -rw-------. 1 boinc boinc       357 Oct 13 17:22 output.list
[2025-10-13 17:22:52] -rw-r--r--. 1 boinc boinc       620 Oct 13 17:22 runtime_log
[2025-10-13 17:22:52] -rw-------. 1 boinc boinc   2447360 Oct 13 17:22 result.tar.gz
[2025-10-13 17:22:52] -rw-------. 1 boinc boinc       657 Oct 13 17:22 u2CODmjTJS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm78UMDmfTb4gm.diag
[2025-10-13 17:22:52] -rw-r--r--. 1 boinc boinc      8703 Oct 13 17:22 runtime_log.err
[2025-10-13 17:22:52] -rw-r--r--. 1 boinc boinc     20817 Oct 13 17:22 stderr.txt
[2025-10-13 17:22:52] HITS file was successfully produced:
[2025-10-13 17:22:52] -rw-------. 1 boinc boinc 190283873 Oct 13 17:19 shared/HITS.pool.root.1
[2025-10-13 17:22:52]  *** Contents of shared directory: ***
[2025-10-13 17:22:52] total 404252
[2025-10-13 17:22:52] -rw-r--r--. 2 boinc boinc 220622902 Oct 13 13:13 ATLAS.root_0
[2025-10-13 17:22:52] -rw-r--r--. 2 boinc boinc     15120 Oct 13 13:13 start_atlas.sh
[2025-10-13 17:22:52] -rw-r--r--. 2 boinc boinc    569679 Oct 13 13:13 input.tar.gz
[2025-10-13 17:22:52] -rw-------. 1 boinc boinc 190283873 Oct 13 17:19 HITS.pool.root.1
[2025-10-13 17:22:52] -rw-------. 1 boinc boinc   2447360 Oct 13 17:22 result.tar.gz
17:22:54 (10968): run_atlas exited; CPU time 52682.642340
17:22:54 (10968): called boinc_finish(0)

</stderr_txt>
]]>

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